Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:19:03 (3030524): wrapper (7.7.26015): starting
10:19:03 (3030524): wrapper: running run_atlas (--nthreads 2)
[2025-11-25 10:19:03] Arguments: --nthreads 2
[2025-11-25 10:19:03] Threads: 2
[2025-11-25 10:19:03] Checking for CVMFS
[2025-11-25 10:19:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:19:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:19:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:19:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:19:04] 2.9.2.0 1897993 9564 58164 153277 1 80 32448121 36864000 0 130560 0 3079624 99.914 497329 6443 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 10:19:04] CVMFS is ok
[2025-11-25 10:19:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:19:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:19:04] Further information can be found at the LHC@home message board.
[2025-11-25 10:19:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:19:04] Checking for apptainer binary...
[2025-11-25 10:19:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:19:04] Running /usr/bin/apptainer --version
[2025-11-25 10:19:04] apptainer version 1.4.1-1.1
[2025-11-25 10:19:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:19:04] thA337
[2025-11-25 10:19:04] apptainer works
[2025-11-25 10:19:04] Set ATHENA_PROC_NUMBER=2
[2025-11-25 10:19:04] Set ATHENA_CORE_NUMBER=2
[2025-11-25 10:19:04] Starting ATLAS job with PandaID=6892527472
[2025-11-25 10:19:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:30:26]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:30:26] 2025-11-25 21:29:28,150 | INFO     | did not find any defunct processes belonging to 3040658
[2025-11-25 22:30:26] 2025-11-25 21:29:28,151 | INFO     | did not find any defunct processes belonging to 3040658
[2025-11-25 22:30:26] 2025-11-25 21:29:28,152 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:30:26] 2025-11-25 21:29:28,152 | INFO     | ready for new job
[2025-11-25 22:30:26] 2025-11-25 21:29:28,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | ***************************************
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | ***************************************
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | 
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | architecture information:
[2025-11-25 22:30:26] 2025-11-25 21:29:28,153 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:30:26] 2025-11-25 21:29:28,162 | INFO     | cat /etc/os-release:
[2025-11-25 22:30:26] NAME="CentOS Linux"
[2025-11-25 22:30:26] VERSION="7 (Core)"
[2025-11-25 22:30:26] ID="centos"
[2025-11-25 22:30:26] ID_LIKE="rhel fedora"
[2025-11-25 22:30:26] VERSION_ID="7"
[2025-11-25 22:30:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:30:26] ANSI_COLOR="0;31"
[2025-11-25 22:30:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:30:26] HOME_URL="https://www.centos.org/"
[2025-11-25 22:30:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:30:26] 
[2025-11-25 22:30:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:30:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:30:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:30:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:30:26] 
[2025-11-25 22:30:26] 2025-11-25 21:29:28,162 | INFO     | ***************************************
[2025-11-25 22:30:26] 2025-11-25 21:29:28,665 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | INFO     | sufficient remaining disk space (475929772032 B)
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | INFO     | update_server=False
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:30:26] 2025-11-25 21:29:28,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:30:26] 2025-11-25 21:29:28,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:30:26] 2025-11-25 21:29:29,118 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 22:30:26] 2025-11-25 21:29:29,118 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 22:30:26] 2025-11-25 21:29:29,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:30:26] 2025-11-25 21:29:29,119 | INFO     | will abort loop
[2025-11-25 22:30:26] 2025-11-25 21:29:29,565 | INFO     | all data control threads have been joined
[2025-11-25 22:30:26] 2025-11-25 21:29:29,683 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:29,683 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:29,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:30:26] 2025-11-25 21:29:29,863 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:29,948 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,088 | INFO     | all payload control threads have been joined
[2025-11-25 22:30:26] 2025-11-25 21:29:30,123 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,372 | INFO     | all job control threads have been joined
[2025-11-25 22:30:26] 2025-11-25 21:29:30,483 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,562 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,571 | INFO     | [data] control thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,782 | INFO     | [job] validate thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,804 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:30,887 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:31,094 | INFO     | [payload] control thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:31,378 | INFO     | [job] control thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:31,822 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:32,834 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:30:26] 2025-11-25 21:29:58,282 | INFO     | PID=3034229 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:30:26] 2025-11-25 21:29:58,282 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:30:26] 2025-11-25 21:29:58,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:30:26] 2025-11-25 21:29:58,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:30:26] 2025-11-25 21:30:19,484 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:30:26] 2025-11-25 21:30:21,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683940218688)>', '<ExcThread(monitor, started 139683065489152)>']
[2025-11-25 22:30:26] 2025-11-25 21:30:22,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:30:26] 2025-11-25 21:30:22,411 | INFO     | [monitor] control thread has ended
[2025-11-25 22:30:26] 2025-11-25 21:30:26,609 | INFO     | all workflow threads have been joined
[2025-11-25 22:30:26] 2025-11-25 21:30:26,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:30:26] 2025-11-25 21:30:26,609 | INFO     | traces error code: 0
[2025-11-25 22:30:26] 2025-11-25 21:30:26,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:30:26] 2025-11-25 21:30:26,650 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:30:26] 2025-11-25 21:30:26,653 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:30:26] 2025-11-25 21:30:26,655 [wrapper] pilotpid: 3034229
[2025-11-25 22:30:26] 2025-11-25 21:30:26,657 [wrapper] Pilot exit status: 0
[2025-11-25 22:30:26] 2025-11-25 21:30:26,662 [wrapper] pandaids: 6892527472
[2025-11-25 22:30:26] 2025-11-25 21:30:26,675 [wrapper] cleanup supervisor_pilot 3112029 3034230
[2025-11-25 22:30:26] 2025-11-25 21:30:26,677 [wrapper] Test setup, not cleaning
[2025-11-25 22:30:26] 2025-11-25 21:30:26,679 [wrapper] apfmon messages muted
[2025-11-25 22:30:26] 2025-11-25 21:30:26,681 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:30:26] 2025-11-25 21:30:26,683 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:30:26]  *** Error codes and diagnostics ***
[2025-11-25 22:30:26]     "exeErrorCode": 0,
[2025-11-25 22:30:26]     "exeErrorDiag": "",
[2025-11-25 22:30:26]     "pilotErrorCode": 0,
[2025-11-25 22:30:26]     "pilotErrorDiag": "",
[2025-11-25 22:30:26]  *** Listing of results directory ***
[2025-11-25 22:30:26] total 1311284
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-25 22:30:26] -rwx------ 1 boinc boinc     36292 Nov 19 08:11 runpilot2-wrapper.sh
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc       100 Nov 25 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:30:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 10:19 run_atlas
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc       105 Nov 25 10:19 job.xml
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc 408691606 Nov 25 10:19 EVNT.47493027._000136.pool.root.1
[2025-11-25 22:30:26] drwxrwx--x 2 boinc boinc      4096 Nov 25 10:19 shared
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc    590101 Nov 25 10:19 input.tar.gz
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc     15120 Nov 25 10:19 start_atlas.sh
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:19 boinc_setup_complete
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc      6207 Nov 25 10:19 init_data.xml
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:19 boinc_lockfile
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc      2773 Nov 25 10:19 pandaJob.out
[2025-11-25 22:30:26] -rw------- 1 boinc boinc    991894 Nov 25 10:19 agis_schedconf.cvmfs.json
[2025-11-25 22:30:26] drwx------ 5 boinc boinc      4096 Nov 25 10:19 pilot3
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc       531 Nov 25 22:26 boinc_task_state.xml
[2025-11-25 22:30:26] -rw------- 1 boinc boinc 915545514 Nov 25 22:28 HITS.47493029._001319.pool.root.1
[2025-11-25 22:30:26] -rw------- 1 boinc boinc      1022 Nov 25 22:29 memory_monitor_summary.json
[2025-11-25 22:30:26] -rw------- 1 boinc boinc   1516240 Nov 25 22:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:30:26] -rw------- 1 boinc boinc   1209299 Nov 25 22:29 log.47493029._001319.job.log.tgz.1
[2025-11-25 22:30:26] -rw------- 1 boinc boinc      8560 Nov 25 22:29 heartbeat.json
[2025-11-25 22:30:26] -rw------- 1 boinc boinc        95 Nov 25 22:29 pilot_heartbeat.json
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc        28 Nov 25 22:30 wrapper_checkpoint.txt
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc      8192 Nov 25 22:30 boinc_mmap_file
[2025-11-25 22:30:26] -rw------- 1 boinc boinc      4938 Nov 25 22:30 pilotlog.txt
[2025-11-25 22:30:26] -rw------- 1 boinc boinc   6095417 Nov 25 22:30 log.47493029._001319.job.log.1
[2025-11-25 22:30:26] -rw------- 1 boinc boinc       353 Nov 25 22:30 output.list
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc       620 Nov 25 22:30 runtime_log
[2025-11-25 22:30:26] -rw------- 1 boinc boinc   7321600 Nov 25 22:30 result.tar.gz
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc      8778 Nov 25 22:30 runtime_log.err
[2025-11-25 22:30:26] -rw------- 1 boinc boinc       665 Nov 25 22:30 PMgMDm2Wrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnkGKDmk8biwm.diag
[2025-11-25 22:30:26] -rw-r--r-- 1 boinc boinc     10209 Nov 25 22:30 stderr.txt
[2025-11-25 22:30:26] HITS file was successfully produced:
[2025-11-25 22:30:26] -rw------- 1 boinc boinc 915545514 Nov 25 22:28 shared/HITS.pool.root.1
[2025-11-25 22:30:26]  *** Contents of shared directory: ***
[2025-11-25 22:30:26] total 1300960
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc 408691606 Nov 25 10:19 ATLAS.root_0
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc    590101 Nov 25 10:19 input.tar.gz
[2025-11-25 22:30:26] -rw-r--r-- 2 boinc boinc     15120 Nov 25 10:19 start_atlas.sh
[2025-11-25 22:30:26] -rw------- 1 boinc boinc 915545514 Nov 25 22:28 HITS.pool.root.1
[2025-11-25 22:30:26] -rw------- 1 boinc boinc   7321600 Nov 25 22:30 result.tar.gz
22:30:28 (3030524): run_atlas exited; CPU time 86840.210050
22:30:28 (3030524): called boinc_finish(0)

</stderr_txt>
]]>

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