Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 15:42:42 (3184873): vboxwrapper version 26210
2025-11-23 15:42:42 (3184873): BOINC client version: 7.18.1
2025-11-23 15:42:42 (3184873): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-23 15:42:42 (3184873): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 15:42:42 (3184873): Create VM. (boinc_0e44f1be34bc383c, slot#7)
2025-11-23 15:42:43 (3184873): Setting Memory Size for VM. (4700MB)
2025-11-23 15:42:43 (3184873): Setting CPU Count for VM. (7)
2025-11-23 15:42:43 (3184873): Setting Chipset Options for VM.
2025-11-23 15:42:43 (3184873): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 15:42:43 (3184873): Setting Boot Options for VM.
2025-11-23 15:42:44 (3184873): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 15:42:44 (3184873): Enabling VM Network Access.
2025-11-23 15:42:44 (3184873): Disabling USB Support for VM.
2025-11-23 15:42:44 (3184873): Disabling COM Port Support for VM.
2025-11-23 15:42:44 (3184873): Disabling LPT Port Support for VM.
2025-11-23 15:42:44 (3184873): Disabling Audio Support for VM.
2025-11-23 15:42:44 (3184873): Disabling Clipboard Support for VM.
2025-11-23 15:42:44 (3184873): Disabling Drag and Drop Support for VM.
2025-11-23 15:42:44 (3184873): Adding storage controller(s) to VM.
2025-11-23 15:42:44 (3184873): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 15:42:45 (3184873): Adding VirtualBox Guest Additions to VM.
2025-11-23 15:42:45 (3184873): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 15:42:45 (3184873): forwarding host port 50169 to guest port 80
2025-11-23 15:42:45 (3184873): Enabling remote desktop for VM.
2025-11-23 15:42:45 (3184873): Enabling shared directory for VM.
2025-11-23 15:42:45 (3184873): Starting VM using VBoxManage interface. (boinc_0e44f1be34bc383c, slot#7)
2025-11-23 15:42:47 (3184873): Successfully started VM. (PID = '3185389')
2025-11-23 15:42:47 (3184873): Reporting VM Process ID to BOINC.
2025-11-23 15:42:47 (3184873): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-23 15:42:47 (3184873): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 15:42:47 (3184873): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 15:42:47 (3184873): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 15:42:47 (3184873): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 15:42:47 (3184873): Detected: Web Application Enabled (http://localhost:50169)
2025-11-23 15:42:47 (3184873): Detected: Remote Desktop Enabled (localhost:36189)
2025-11-23 15:42:47 (3184873): Preference change detected
2025-11-23 15:42:47 (3184873): Setting CPU throttle for VM. (90%)
2025-11-23 15:42:47 (3184873): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 15:42:49 (3184873): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 15:42:49 (3184873): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 15:42:52 (3184873): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 15:42:52 (3184873): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 15:42:52 (3184873): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 15:43:04 (3184873): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 15:43:04 (3184873): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-23 15:43:14 (3184873): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000274 main     Log opened 2025-11-23T13:43:13.125410000Z
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000544 main     OS Product: Linux
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000599 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000640 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000678 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000679 main     Process ID: 1351
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.000680 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 15:43:14 (3184873): Guest Log: 00:00:00.004585 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 15:43:14 (3184873): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 15:43:14 (3184873): Guest Log: [INFO] Mounting shared directory
2025-11-23 15:43:14 (3184873): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 15:44:11 (3184873): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 15:44:12 (3184873): Guest Log: [INFO] Detected branch: prod
2025-11-23 15:44:12 (3184873): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 15:44:12 (3184873): Guest Log: Copying input files
2025-11-23 15:44:14 (3184873): Guest Log: Copied input files into RunAtlas.
2025-11-23 15:44:14 (3184873): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-11-23 15:45:08 (3184873): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 15:45:08 (3184873): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 15:45:08 (3184873): Guest Log: 2.6.3.0 1651 0 29608 153210 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-11-23 15:45:09 (3184873): Guest Log: copied the webapp to /var/www
2025-11-23 15:45:09 (3184873): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-23 15:45:09 (3184873): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-23 15:45:09 (3184873): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 15:45:09 (3184873): Guest Log:  *** Starting ATLAS job. (PandaID=6895328081 taskID=47556137) ***
2025-11-23 15:54:51 (3184873): Guest Log:  *** Job finished ***
2025-11-23 15:54:51 (3184873): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:45,410 | INFO     | all workflow threads have been joined
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:45,411 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:45,411 | INFO     | traces error code: 0
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:45,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,243 | INFO     | PID=6064 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,245 | INFO     | found 0 job(s) in 20 queues
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,245 | INFO     | [monitor] control thread has ended
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,343 [wrapper] ==== pilot stdout END ====
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,353 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,360 [wrapper] pilotpid: 6064
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,367 [wrapper] Pilot exit status: 0
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,386 [wrapper] pandaids: 6895328081
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,426 [wrapper] cleanup supervisor_pilot  6070 6065
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,434 [wrapper] Test setup, not cleaning
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,441 [wrapper] apfmon messages muted
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,447 [wrapper] ==== wrapper stdout END ====
2025-11-23 15:54:51 (3184873): Guest Log: 2025-11-23 13:54:48,455 [wrapper] ==== wrapper stderr END ====
2025-11-23 15:54:51 (3184873): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 15:54:51 (3184873): Guest Log:     "exeErrorCode": 65,
2025-11-23 15:54:51 (3184873): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-23 15:54:51 (3184873): Guest Log:     "pilotErrorCode": 1305,
2025-11-23 15:54:51 (3184873): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2025-11-23 15:54:51 (3184873): Guest Log:  *** Listing of results directory ***
2025-11-23 15:54:51 (3184873): Guest Log: total 4224
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas  598293 Nov  6 08:41 pilot3.tar.gz
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 21 16:14 queuedata.json
2025-11-23 15:54:51 (3184873): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 21 16:16 runpilot2-wrapper.sh
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas   15847 Nov 23 13:44 start_atlas.sh
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas  611280 Nov 23 13:44 input.tar.gz
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas    7503 Nov 23 13:44 init_data.xml
2025-11-23 15:54:51 (3184873): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 23 13:44 EVNT.47483658._000061.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas    2784 Nov 23 13:45 pandaJob.out
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas      69 Nov 23 13:45 setup.sh.local
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas  989785 Nov 23 13:45 agis_schedconf.cvmfs.json
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas 1526164 Nov 23 13:45 agis_ddmendpoints.agis.ALL.json
2025-11-23 15:54:51 (3184873): Guest Log: drwx------. 7 atlas atlas    4096 Nov 23 13:45 pilot3
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas    1018 Nov 23 13:52 memory_monitor_summary.json
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas   78714 Nov 23 13:52 log.47556137._000609.job.log.tgz.1
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas    9227 Nov 23 13:54 heartbeat.json
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas      95 Nov 23 13:54 pilot_heartbeat.json
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas     744 Nov 23 13:54 pilotlog.txt
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas  135474 Nov 23 13:54 log.47556137._000609.job.log.1
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas     186 Nov 23 13:54 output.list
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 23 13:54 runtime_log
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas  235520 Nov 23 13:54 result.tar.gz
2025-11-23 15:54:51 (3184873): Guest Log: -rw-r--r--. 1 atlas atlas    9234 Nov 23 13:54 runtime_log.err
2025-11-23 15:54:51 (3184873): Guest Log: -rw-------. 1 atlas atlas     662 Nov 23 13:54 8OoNDmizig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoXJKDmQ1WMKm.diag
2025-11-23 15:54:51 (3184873): Guest Log: Looking for outputfile HITS.47556137._000609.pool.root.1
2025-11-23 15:54:51 (3184873): Guest Log: No HITS file was produced
2025-11-23 15:54:51 (3184873): Guest Log: Successfully finished the ATLAS job!
2025-11-23 15:54:51 (3184873): Guest Log: Copying the results back to the shared directory!
2025-11-23 15:54:52 (3184873): Guest Log:  *** Contents of shared directory: ***
2025-11-23 15:54:52 (3184873): Guest Log: total 401342
2025-11-23 15:54:52 (3184873): Guest Log: -rw-r--r--. 1 root root 410094069 Nov 23 13:42 ATLAS.root_0
2025-11-23 15:54:52 (3184873): Guest Log: -rw-r--r--. 1 root root      7503 Nov 23 13:42 init_data.xml
2025-11-23 15:54:52 (3184873): Guest Log: -rw-r--r--. 1 root root    611280 Nov 23 13:42 input.tar.gz
2025-11-23 15:54:52 (3184873): Guest Log: -rw-r--r--. 1 root root    235520 Nov 23  2025 result.tar.gz
2025-11-23 15:54:52 (3184873): Guest Log: -rw-r--r--. 1 root root     15847 Nov 23 13:42 start_atlas.sh
2025-11-23 15:54:52 (3184873): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 15:54:52 (3184873): VM Completion File Detected.
2025-11-23 15:54:52 (3184873): Powering off VM.
2025-11-23 15:54:53 (3184873): Successfully stopped VM.
2025-11-23 15:54:53 (3184873): Deregistering VM. (boinc_0e44f1be34bc383c, slot#7)
2025-11-23 15:54:53 (3184873): Removing network bandwidth throttle group from VM.
2025-11-23 15:54:53 (3184873): Removing VM from VirtualBox.
2025-11-23 15:54:58 (3184873): called boinc_finish(0)

</stderr_txt>
]]>

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