Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:57:30 (427460): wrapper (7.7.26015): starting
08:57:30 (427460): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 08:57:30] Arguments: --nthreads 8
[2025-11-22 08:57:30] Threads: 8
[2025-11-22 08:57:30] Checking for CVMFS
[2025-11-22 08:57:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 08:57:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 08:57:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 08:57:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 08:57:31] 2.13.2.0 4057 27230 191224 153173 3 358 35941081 39288832 6391 16776704 0 17894760 99.621 16923484 39153 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 08:57:31] CVMFS is ok
[2025-11-22 08:57:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 08:57:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 08:57:31] Further information can be found at the LHC@home message board.
[2025-11-22 08:57:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 08:57:31] Checking for apptainer binary...
[2025-11-22 08:57:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 08:57:31] Running /usr/bin/apptainer --version
[2025-11-22 08:57:31] apptainer version 1.4.4-1.el9
[2025-11-22 08:57:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 08:57:31] c-210-24.aglt2.org
[2025-11-22 08:57:31] apptainer works
[2025-11-22 08:57:31] Set ATHENA_PROC_NUMBER=8
[2025-11-22 08:57:31] Set ATHENA_CORE_NUMBER=8
[2025-11-22 08:57:31] Starting ATLAS job with PandaID=6895328003
[2025-11-22 08:57:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:28:33]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:28:33] 2025-11-24 10:27:36,688 | INFO     | monitor loop #10113: job 0:6895328003 is in state 'finished'
[2025-11-24 05:28:33] 2025-11-24 10:27:36,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:28:33] 2025-11-24 10:27:38,578 | INFO     | time since job start (160182s) is within the limit (172800.0s)
[2025-11-24 05:28:33] 2025-11-24 10:27:39,217 | INFO     | monitor loop #10114: job 0:6895328003 is in state 'finished'
[2025-11-24 05:28:33] 2025-11-24 10:27:39,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:28:33] 2025-11-24 10:27:40,586 | INFO     | time since job start (160184s) is within the limit (172800.0s)
[2025-11-24 05:28:33] 2025-11-24 10:27:41,832 | INFO     | monitor loop #10115: job 0:6895328003 is in state 'finished'
[2025-11-24 05:28:33] 2025-11-24 10:27:41,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:28:33] 2025-11-24 10:27:42,612 | INFO     | time since job start (160186s) is within the limit (172800.0s)
[2025-11-24 05:28:33] 2025-11-24 10:27:43,485 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:28:33] 2025-11-24 10:27:43,534 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0567249999995
[2025-11-24 05:28:33] 2025-11-24 10:27:43,599 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895328003/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:28:33] 2025-11-24 10:27:43,633 | INFO     | extracted standard info from prmon json
[2025-11-24 05:28:33] 2025-11-24 10:27:43,634 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:28:33] 2025-11-24 10:27:43,634 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:28:33] 2025-11-24 10:27:43,817 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:28:33] 2025-11-24 10:27:43,826 | INFO     | sum of square deviations: 5602678417336.054
[2025-11-24 05:28:33] 2025-11-24 10:27:44,179 | INFO     | sum of deviations: 3923390694345.9385
[2025-11-24 05:28:33] 2025-11-24 10:27:44,180 | INFO     | mean x: 1763899926.8620427
[2025-11-24 05:28:33] 2025-11-24 10:27:44,180 | INFO     | mean y: 2991270.7816310977
[2025-11-24 05:28:33] 2025-11-24 10:27:44,184 | INFO     | intersect: -1232215900.3803623
[2025-11-24 05:28:33] 2025-11-24 10:27:44,188 | INFO     | chi2: 36.45879362375573
[2025-11-24 05:28:33] 2025-11-24 10:27:44,196 | INFO     | sum of square deviations: 5570716170184.914
[2025-11-24 05:28:33] 2025-11-24 10:27:44,356 | INFO     | monitor loop #10116: job 0:6895328003 is in state 'finished'
[2025-11-24 05:28:33] 2025-11-24 10:27:44,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:28:33] 2025-11-24 10:27:44,521 | INFO     | sum of deviations: 4949993218381.773
[2025-11-24 05:28:33] 2025-11-24 10:27:44,521 | INFO     | mean x: 1763899774.3676975
[2025-11-24 05:28:33] 2025-11-24 10:27:44,522 | INFO     | mean y: 2996168.3470790377
[2025-11-24 05:28:33] 2025-11-24 10:27:44,522 | INFO     | intersect: -1564359204.6938376
[2025-11-24 05:28:33] 2025-11-24 10:27:44,533 | INFO     | chi2: 32.395042614310455
[2025-11-24 05:28:33] 2025-11-24 10:27:44,534 | INFO     | current chi2=32.395042614310455 (change=11.146147761722505 %)
[2025-11-24 05:28:33] 2025-11-24 10:27:44,534 | INFO     | right removable region: 2618
[2025-11-24 05:28:33] 2025-11-24 10:27:44,541 | INFO     | sum of square deviations: 5570711108639.435
[2025-11-24 05:28:33] 2025-11-24 10:27:44,776 | INFO     | time since job start (160188s) is within the limit (172800.0s)
[2025-11-24 05:28:33] 2025-11-24 10:27:45,441 | INFO     | sum of deviations: 2863230574071.0625
[2025-11-24 05:28:33] 2025-11-24 10:27:45,441 | INFO     | mean x: 1763900079.3684611
[2025-11-24 05:28:33] 2025-11-24 10:27:45,441 | INFO     | mean y: 2996328.1004200075
[2025-11-24 05:28:33] 2025-11-24 10:27:45,441 | INFO     | intersect: -903611919.6368517
[2025-11-24 05:28:33] 2025-11-24 10:27:45,483 | INFO     | chi2: 32.65763357591088
[2025-11-24 05:28:33] 2025-11-24 10:27:45,484 | INFO     | current chi2=32.65763357591088 (change=10.425907360160437 %)
[2025-11-24 05:28:33] 2025-11-24 10:27:45,484 | INFO     | left removable region: 10
[2025-11-24 05:28:33] 2025-11-24 10:27:45,515 | INFO     | sum of square deviations: 5500817952573.147
[2025-11-24 05:28:33] 2025-11-24 10:27:46,819 | INFO     | time since job start (160190s) is within the limit (172800.0s)
[2025-11-24 05:28:33] 2025-11-24 10:27:46,819 | INFO     | 160194s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 05:28:33] 2025-11-24 10:27:46,966 | INFO     | monitor loop #10117: job 0:6895328003 is in state 'finished'
[2025-11-24 05:28:33] 2025-11-24 10:27:46,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:28:33] 2025-11-24 10:27:47,415 | INFO     | sum of deviations: 3526086484147.619
[2025-11-24 05:28:33] 2025-11-24 10:27:47,416 | INFO     | mean x: 1763900048.881135
[2025-11-24 05:28:33] 2025-11-24 10:27:47,416 | INFO     | mean y: 3004725.5536809815
[2025-11-24 05:28:33] 2025-11-24 10:27:47,423 | INFO     | intersect: -1127675143.3988426
[2025-11-24 05:28:33] 2025-11-24 10:27:47,435 | INFO     | chi2: 26.86072099789113
[2025-11-24 05:28:33] 2025-11-24 10:27:47,436 | INFO     | current memory leak: 0.64 B/s (using 2608 data points, chi2=26.86)
[2025-11-24 05:28:33] 2025-11-24 10:27:47,438 | INFO     | could have reported an average CPU frequency of 2599 MHz (90 samples)
[2025-11-24 05:28:33] 2025-11-24 10:27:47,438 | INFO     | ..............................
[2025-11-24 05:28:33] 2025-11-24 10:27:47,438 | INFO     | . Timing measurements:
[2025-11-24 05:28:33] 2025-11-24 10:27:47,438 | INFO     | . get job = 0 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,439 | INFO     | . initial setup = 3 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,439 | INFO     | . payload setup = 12 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,439 | INFO     | . stage-in = 0 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,439 | INFO     | . payload execution = 160059 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,439 | INFO     | . stage-out = 35 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,448 | INFO     | . log creation = 15 s
[2025-11-24 05:28:33] 2025-11-24 10:27:47,448 | INFO     | ..............................
[2025-11-24 05:28:33] 2025-11-24 10:27:48,054 | INFO     | 
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | job summary report
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | --------------------------------------------------
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | PanDA job id: 6895328003
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | task id: 47556137
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | errors: (none)
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | pilot state: finished 
[2025-11-24 05:28:33] 2025-11-24 10:27:48,055 | INFO     | transexitcode: 0
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | exeerrorcode: 0
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | exeerrordiag: 
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | exitcode: 0
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | exitmsg: OK
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | cpuconsumptiontime: 320256 s
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | nevents: 1000
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | neventsw: 0
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | pid: 437808
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | pgrp: 437808
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | corecount: 8
[2025-11-24 05:28:33] 2025-11-24 10:27:48,056 | INFO     | event service: False
[2025-11-24 05:28:33] 2025-11-24 10:27:48,057 | INFO     | sizes: {0: 2298632, 1: 2298831, 11: 2299093, 12: 2299121, 160074: 2398325, 160076: 2398324, 160112: 2407502, 160113: 2407558, 160170: 2407804}
[2025-11-24 05:28:33] 2025-11-24 10:27:48,057 | INFO     | --------------------------------------------------
[2025-11-24 05:28:33] 2025-11-24 10:27:48,057 | INFO     | 
[2025-11-24 05:28:33] 2025-11-24 10:27:48,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 05:28:33] 2025-11-24 10:27:48,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:28:33] 2025-11-24 10:27:48,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:28:33] 2025-11-24 10:27:48,080 | INFO     | job 6895328003 has completed (purged errors)
[2025-11-24 05:28:33] 2025-11-24 10:27:48,080 | INFO     | overall cleanup function is called
[2025-11-24 05:28:33] 2025-11-24 10:27:49,099 | INFO     | --- collectZombieJob: --- 10, [437808]
[2025-11-24 05:28:33] 2025-11-24 10:27:49,099 | INFO     | zombie collector waiting for pid 437808
[2025-11-24 05:28:33] 2025-11-24 10:27:49,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:28:33] 2025-11-24 10:27:49,100 | INFO     | collected zombie processes
[2025-11-24 05:28:33] 2025-11-24 10:27:49,100 | INFO     | will attempt to kill all subprocesses of pid=437808
[2025-11-24 05:28:33] 2025-11-24 10:27:49,764 | INFO     | process IDs to be killed: [437808] (in reverse order)
[2025-11-24 05:28:33] 2025-11-24 10:27:51,004 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:28:33] 2025-11-24 10:27:51,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:28:33] 2025-11-24 10:27:51,050 | INFO     | did not find any defunct processes belonging to 437808
[2025-11-24 05:28:33] 2025-11-24 10:27:51,222 | INFO     | did not find any defunct processes belonging to 437808
[2025-11-24 05:28:33] 2025-11-24 10:27:51,265 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:28:33] 2025-11-24 10:27:51,266 | INFO     | ready for new job
[2025-11-24 05:28:33] 2025-11-24 10:27:51,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:28:33] 2025-11-24 10:27:51,329 | INFO     | ***************************************
[2025-11-24 05:28:33] 2025-11-24 10:27:51,330 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:28:33] 2025-11-24 10:27:51,330 | INFO     | ***************************************
[2025-11-24 05:28:33] 2025-11-24 10:27:51,330 | INFO     | 
[2025-11-24 05:28:33] 2025-11-24 10:27:51,368 | INFO     | architecture information:
[2025-11-24 05:28:33] 2025-11-24 10:27:51,378 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:28:33] 2025-11-24 10:27:51,621 | INFO     | cat /etc/os-release:
[2025-11-24 05:28:33] NAME="CentOS Linux"
[2025-11-24 05:28:33] VERSION="7 (Core)"
[2025-11-24 05:28:33] ID="centos"
[2025-11-24 05:28:33] ID_LIKE="rhel fedora"
[2025-11-24 05:28:33] VERSION_ID="7"
[2025-11-24 05:28:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:28:33] ANSI_COLOR="0;31"
[2025-11-24 05:28:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:28:33] HOME_URL="https://www.centos.org/"
[2025-11-24 05:28:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:28:33] 
[2025-11-24 05:28:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:28:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:28:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:28:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:28:33] 
[2025-11-24 05:28:33] 2025-11-24 10:27:51,621 | INFO     | ***************************************
[2025-11-24 05:28:33] 2025-11-24 10:27:52,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 05:28:33] 2025-11-24 10:27:52,235 | INFO     | sufficient remaining disk space (50302287872 B)
[2025-11-24 05:28:33] 2025-11-24 10:27:52,235 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:28:33] 2025-11-24 10:27:52,235 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:28:33] 2025-11-24 10:27:52,235 | INFO     | update_server=False
[2025-11-24 05:28:33] 2025-11-24 10:27:52,235 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:28:33] 2025-11-24 10:27:52,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:28:33] 2025-11-24 10:27:52,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:28:33] 2025-11-24 10:27:52,911 | INFO     | all data control threads have been joined
[2025-11-24 05:28:33] 2025-11-24 10:27:53,119 | INFO     | all job control threads have been joined
[2025-11-24 05:28:33] 2025-11-24 10:27:53,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:28:33] 2025-11-24 10:27:53,209 | INFO     | aborting loop
[2025-11-24 05:28:33] 2025-11-24 10:27:53,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:28:33] 2025-11-24 10:27:53,240 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:53,442 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:53,670 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:28:33] 2025-11-24 10:27:53,741 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:53,754 | INFO     | all payload control threads have been joined
[2025-11-24 05:28:33] 2025-11-24 10:27:53,758 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:53,916 | INFO     | [data] control thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:53,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,018 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,068 | INFO     | [job] validate thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,126 | INFO     | [job] control thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,221 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,242 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,292 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,555 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,742 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:54,760 | INFO     | [payload] control thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:56,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:28:33] 2025-11-24 10:27:57,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794147202880)>', '<ExcThread(monitor, started 139793484715776)>']
[2025-11-24 05:28:33] 2025-11-24 10:28:02,120 | INFO     | all workflow threads have been joined
[2025-11-24 05:28:33] 2025-11-24 10:28:02,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:28:33] 2025-11-24 10:28:02,121 | INFO     | traces error code: 0
[2025-11-24 05:28:33] 2025-11-24 10:28:02,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:28:33] 2025-11-24 10:28:21,068 [wrapper] supervise_pilot (15 min periods counter: 179)
[2025-11-24 05:28:33] 2025-11-24 10:28:26,464 | INFO     | PID=431420 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 05:28:33] 2025-11-24 10:28:26,464 | INFO     | .. there are 8 such processes running
[2025-11-24 05:28:33] 2025-11-24 10:28:26,464 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:28:33] 2025-11-24 10:28:26,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:28:33] 2025-11-24 10:28:26,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:28:33] 2025-11-24 10:28:26,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:28:33] 2025-11-24 10:28:26,465 | INFO     | [monitor] control thread has ended
[2025-11-24 05:28:33] 2025-11-24 10:28:31,299 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:28:33] 2025-11-24 10:28:31,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:28:33] 2025-11-24 10:28:31,434 [wrapper] pilotpid: 431420
[2025-11-24 05:28:33] 2025-11-24 10:28:31,496 [wrapper] Pilot exit status: 0
[2025-11-24 05:28:33] 2025-11-24 10:28:31,630 [wrapper] pandaids: 6895328003
[2025-11-24 05:28:33] 2025-11-24 10:28:31,814 [wrapper] cleanup supervisor_pilot 3945480 431421
[2025-11-24 05:28:33] 2025-11-24 10:28:31,857 [wrapper] Test setup, not cleaning
[2025-11-24 05:28:33] 2025-11-24 10:28:31,882 [wrapper] apfmon messages muted
[2025-11-24 05:28:33] 2025-11-24 10:28:31,901 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:28:33] 2025-11-24 10:28:31,952 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:28:33]  *** Error codes and diagnostics ***
[2025-11-24 05:28:33]     "exeErrorCode": 0,
[2025-11-24 05:28:33]     "exeErrorDiag": "",
[2025-11-24 05:28:33]     "pilotErrorCode": 0,
[2025-11-24 05:28:33]     "pilotErrorDiag": "",
[2025-11-24 05:28:33]  *** Listing of results directory ***
[2025-11-24 05:28:33] total 1349644
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 10:53 pilot3.tar.gz
[2025-11-24 05:28:33] -rwx------. 1 boincer umatlas     36292 Nov 21 11:11 runpilot2-wrapper.sh
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 11:11 queuedata.json
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas       100 Nov 22 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:28:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 08:57 run_atlas
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas       105 Nov 22 08:57 job.xml
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas 411796506 Nov 22 08:57 EVNT.47483658._000059.pool.root.1
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 08:57 start_atlas.sh
[2025-11-24 05:28:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 08:57 shared
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas    590093 Nov 22 08:57 input.tar.gz
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas         0 Nov 22 08:57 boinc_lockfile
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas      2784 Nov 22 08:57 pandaJob.out
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas        57 Nov 22 08:57 setup.sh.local
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas    989768 Nov 22 08:57 agis_schedconf.cvmfs.json
[2025-11-24 05:28:33] drwx------. 5 boincer umatlas      4096 Nov 22 08:57 pilot3
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas       534 Nov 24 04:21 boinc_task_state.xml
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas      6661 Nov 24 05:19 init_data.xml
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas 918070426 Nov 24 05:22 HITS.47556137._000582.pool.root.1
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas      1058 Nov 24 05:26 memory_monitor_summary.json
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas   1526164 Nov 24 05:26 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas   3357110 Nov 24 05:26 log.47556137._000582.job.log.tgz.1
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas        95 Nov 24 05:27 pilot_heartbeat.json
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas      8622 Nov 24 05:27 heartbeat.json
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas       821 Nov 24 05:28 pilotlog.txt
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas  20766313 Nov 24 05:28 log.47556137._000582.job.log.1
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas        30 Nov 24 05:28 wrapper_checkpoint.txt
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas       353 Nov 24 05:28 output.list
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 05:28 boinc_mmap_file
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas       620 Nov 24 05:28 runtime_log
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas  24145920 Nov 24 05:28 result.tar.gz
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 05:28 runtime_log.err
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas       664 Nov 24 05:28 g9FLDmbuig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKjHKDm1ycO3n.diag
[2025-11-24 05:28:33] -rw-r--r--. 1 boincer umatlas     21796 Nov 24 05:28 stderr.txt
[2025-11-24 05:28:33] HITS file was successfully produced:
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas 918070426 Nov 24 05:22 shared/HITS.pool.root.1
[2025-11-24 05:28:33]  *** Contents of shared directory: ***
[2025-11-24 05:28:33] total 1322884
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas 411796506 Nov 22 08:57 ATLAS.root_0
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 08:57 start_atlas.sh
[2025-11-24 05:28:33] -rw-r--r--. 2 boincer umatlas    590093 Nov 22 08:57 input.tar.gz
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas 918070426 Nov 24 05:22 HITS.pool.root.1
[2025-11-24 05:28:33] -rw-------. 1 boincer umatlas  24145920 Nov 24 05:28 result.tar.gz
05:28:35 (427460): run_atlas exited; CPU time 322479.941871
05:28:35 (427460): called boinc_finish(0)

</stderr_txt>
]]>

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