Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:13 (2833941): wrapper (7.7.26015): starting
08:02:13 (2833941): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 08:02:13] Arguments: --nthreads 3
[2025-11-25 08:02:13] Threads: 3
[2025-11-25 08:02:13] Checking for CVMFS
[2025-11-25 08:02:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:02:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:02:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:02:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:02:13] 2.9.2.0 1502042 10105 75560 153273 2 81 35255706 36864001 0 130560 0 3610819 99.848 614589 7286 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 08:02:13] CVMFS is ok
[2025-11-25 08:02:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:02:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:02:13] Further information can be found at the LHC@home message board.
[2025-11-25 08:02:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:02:13] Checking for apptainer binary...
[2025-11-25 08:02:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:02:13] Running /usr/bin/apptainer --version
[2025-11-25 08:02:13] apptainer version 1.4.1-1.1
[2025-11-25 08:02:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:02:14] atlasA223a
[2025-11-25 08:02:14] apptainer works
[2025-11-25 08:02:14] Set ATHENA_PROC_NUMBER=3
[2025-11-25 08:02:14] Set ATHENA_CORE_NUMBER=3
[2025-11-25 08:02:14] Starting ATLAS job with PandaID=6895328064
[2025-11-25 08:02:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:51:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:51:14] 2025-11-25 15:50:26,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:51:14] 2025-11-25 15:50:26,754 | INFO     | collected zombie processes
[2025-11-25 16:51:14] 2025-11-25 15:50:26,754 | INFO     | will attempt to kill all subprocesses of pid=2844118
[2025-11-25 16:51:14] 2025-11-25 15:50:26,795 | INFO     | process IDs to be killed: [2844118] (in reverse order)
[2025-11-25 16:51:14] 2025-11-25 15:50:26,821 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:51:14] 2025-11-25 15:50:26,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:51:14] 2025-11-25 15:50:26,822 | INFO     | did not find any defunct processes belonging to 2844118
[2025-11-25 16:51:14] 2025-11-25 15:50:26,823 | INFO     | did not find any defunct processes belonging to 2844118
[2025-11-25 16:51:14] 2025-11-25 15:50:26,824 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:51:14] 2025-11-25 15:50:26,824 | INFO     | ready for new job
[2025-11-25 16:51:14] 2025-11-25 15:50:26,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:51:14] 2025-11-25 15:50:26,825 | INFO     | ***************************************
[2025-11-25 16:51:14] 2025-11-25 15:50:26,825 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:51:14] 2025-11-25 15:50:26,825 | INFO     | ***************************************
[2025-11-25 16:51:14] 2025-11-25 15:50:26,825 | INFO     | 
[2025-11-25 16:51:14] 2025-11-25 15:50:26,825 | INFO     | architecture information:
[2025-11-25 16:51:14] 2025-11-25 15:50:26,826 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:51:14] 2025-11-25 15:50:26,835 | INFO     | cat /etc/os-release:
[2025-11-25 16:51:14] NAME="CentOS Linux"
[2025-11-25 16:51:14] VERSION="7 (Core)"
[2025-11-25 16:51:14] ID="centos"
[2025-11-25 16:51:14] ID_LIKE="rhel fedora"
[2025-11-25 16:51:14] VERSION_ID="7"
[2025-11-25 16:51:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:51:14] ANSI_COLOR="0;31"
[2025-11-25 16:51:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:51:14] HOME_URL="https://www.centos.org/"
[2025-11-25 16:51:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:51:14] 
[2025-11-25 16:51:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:51:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:51:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:51:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:51:14] 
[2025-11-25 16:51:14] 2025-11-25 15:50:26,835 | INFO     | ***************************************
[2025-11-25 16:51:14] 2025-11-25 15:50:27,337 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | INFO     | sufficient remaining disk space (321710456832 B)
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | INFO     | update_server=False
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:51:14] 2025-11-25 15:50:27,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:51:14] 2025-11-25 15:50:27,429 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 16:51:14] 2025-11-25 15:50:27,430 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 16:51:14] 2025-11-25 15:50:27,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:51:14] 2025-11-25 15:50:27,430 | INFO     | will abort loop
[2025-11-25 16:51:14] 2025-11-25 15:50:27,803 | INFO     | all data control threads have been joined
[2025-11-25 16:51:14] 2025-11-25 15:50:27,874 | INFO     | all job control threads have been joined
[2025-11-25 16:51:14] 2025-11-25 15:50:28,296 | INFO     | all payload control threads have been joined
[2025-11-25 16:51:14] 2025-11-25 15:50:28,357 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:28,358 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:28,436 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:28,465 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:28,808 | INFO     | [data] control thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:28,880 | INFO     | [job] control thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,302 | INFO     | [payload] control thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,357 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,401 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,410 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,414 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,557 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:51:14] 2025-11-25 15:50:29,743 | INFO     | [job] validate thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,801 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:29,837 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:33,571 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:51:14] 2025-11-25 15:50:57,997 | INFO     | PID=2837667 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:51:14] 2025-11-25 15:50:57,997 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:51:14] 2025-11-25 15:50:57,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:51:14] 2025-11-25 15:50:57,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:51:14] 2025-11-25 15:51:08,535 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:51:14] 2025-11-25 15:51:09,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637793646400)>', '<ExcThread(monitor, started 139637012023040)>']
[2025-11-25 16:51:14] 2025-11-25 15:51:10,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:51:14] 2025-11-25 15:51:10,057 | INFO     | [monitor] control thread has ended
[2025-11-25 16:51:14] 2025-11-25 15:51:14,568 | INFO     | all workflow threads have been joined
[2025-11-25 16:51:14] 2025-11-25 15:51:14,568 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:51:14] 2025-11-25 15:51:14,569 | INFO     | traces error code: 0
[2025-11-25 16:51:14] 2025-11-25 15:51:14,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:51:14] 2025-11-25 15:51:14,618 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:51:14] 2025-11-25 15:51:14,621 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:51:14] 2025-11-25 15:51:14,624 [wrapper] pilotpid: 2837667
[2025-11-25 16:51:14] 2025-11-25 15:51:14,627 [wrapper] Pilot exit status: 0
[2025-11-25 16:51:14] 2025-11-25 15:51:14,635 [wrapper] pandaids: 6895328064
[2025-11-25 16:51:14] 2025-11-25 15:51:14,653 [wrapper] cleanup supervisor_pilot 2901563 2837668
[2025-11-25 16:51:14] 2025-11-25 15:51:14,656 [wrapper] Test setup, not cleaning
[2025-11-25 16:51:14] 2025-11-25 15:51:14,658 [wrapper] apfmon messages muted
[2025-11-25 16:51:14] 2025-11-25 15:51:14,661 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:51:14] 2025-11-25 15:51:14,663 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:51:14]  *** Error codes and diagnostics ***
[2025-11-25 16:51:14]     "exeErrorCode": 0,
[2025-11-25 16:51:14]     "exeErrorDiag": "",
[2025-11-25 16:51:14]     "pilotErrorCode": 0,
[2025-11-25 16:51:14]     "pilotErrorDiag": "",
[2025-11-25 16:51:14]  *** Listing of results directory ***
[2025-11-25 16:51:14] total 1308844
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc      5112 Nov 21 17:14 queuedata.json
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc    576529 Nov 21 17:16 pilot3.tar.gz
[2025-11-25 16:51:14] -rwx------ 1 boinc boinc     36292 Nov 21 17:18 runpilot2-wrapper.sh
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc       100 Nov 25 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:51:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 08:02 run_atlas
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc       105 Nov 25 08:02 job.xml
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc 409975451 Nov 25 08:02 EVNT.47483658._000060.pool.root.1
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc    590097 Nov 25 08:02 input.tar.gz
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:02 start_atlas.sh
[2025-11-25 16:51:14] drwxrwx--x 2 boinc boinc      4096 Nov 25 08:02 shared
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:02 boinc_setup_complete
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc      6199 Nov 25 08:02 init_data.xml
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:02 boinc_lockfile
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc      2784 Nov 25 08:02 pandaJob.out
[2025-11-25 16:51:14] -rw------- 1 boinc boinc    991801 Nov 25 08:02 agis_schedconf.cvmfs.json
[2025-11-25 16:51:14] drwx------ 5 boinc boinc      4096 Nov 25 08:02 pilot3
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc       532 Nov 25 16:46 boinc_task_state.xml
[2025-11-25 16:51:14] -rw------- 1 boinc boinc 915058729 Nov 25 16:49 HITS.47556137._000592.pool.root.1
[2025-11-25 16:51:14] -rw------- 1 boinc boinc        95 Nov 25 16:50 pilot_heartbeat.json
[2025-11-25 16:51:14] -rw------- 1 boinc boinc      1023 Nov 25 16:50 memory_monitor_summary.json
[2025-11-25 16:51:14] -rw------- 1 boinc boinc   1516240 Nov 25 16:50 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:51:14] -rw------- 1 boinc boinc   1200834 Nov 25 16:50 log.47556137._000592.job.log.tgz.1
[2025-11-25 16:51:14] -rw------- 1 boinc boinc      8567 Nov 25 16:50 heartbeat.json
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc        28 Nov 25 16:50 wrapper_checkpoint.txt
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc      8192 Nov 25 16:50 boinc_mmap_file
[2025-11-25 16:51:14] -rw------- 1 boinc boinc      4938 Nov 25 16:51 pilotlog.txt
[2025-11-25 16:51:14] -rw------- 1 boinc boinc   4456641 Nov 25 16:51 log.47556137._000592.job.log.1
[2025-11-25 16:51:14] -rw------- 1 boinc boinc       353 Nov 25 16:51 output.list
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc       620 Nov 25 16:51 runtime_log
[2025-11-25 16:51:14] -rw------- 1 boinc boinc   5672960 Nov 25 16:51 result.tar.gz
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc      8918 Nov 25 16:51 runtime_log.err
[2025-11-25 16:51:14] -rw------- 1 boinc boinc       669 Nov 25 16:51 dNkMDm20ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrXJKDmdVdUem.diag
[2025-11-25 16:51:14] -rw-r--r-- 1 boinc boinc     10873 Nov 25 16:51 stderr.txt
[2025-11-25 16:51:14] HITS file was successfully produced:
[2025-11-25 16:51:14] -rw------- 1 boinc boinc 915058729 Nov 25 16:49 shared/HITS.pool.root.1
[2025-11-25 16:51:14]  *** Contents of shared directory: ***
[2025-11-25 16:51:14] total 1300128
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc 409975451 Nov 25 08:02 ATLAS.root_0
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc    590097 Nov 25 08:02 input.tar.gz
[2025-11-25 16:51:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:02 start_atlas.sh
[2025-11-25 16:51:14] -rw------- 1 boinc boinc 915058729 Nov 25 16:49 HITS.pool.root.1
[2025-11-25 16:51:14] -rw------- 1 boinc boinc   5672960 Nov 25 16:51 result.tar.gz
16:51:16 (2833941): run_atlas exited; CPU time 93618.411497
16:51:16 (2833941): called boinc_finish(0)

</stderr_txt>
]]>

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