Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:20 (3802035): wrapper (7.7.26015): starting
00:04:20 (3802035): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:04:20] Arguments: --nthreads 12
[2025-11-23 00:04:20] Threads: 12
[2025-11-23 00:04:20] Checking for CVMFS
[2025-11-23 00:04:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:04:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:04:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:04:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:04:22] 2.13.2.0 37103 28947 215776 153197 3 470 34533067 40960001 14217 16776704 0 42256677 99.596 44188626 23628 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:04:22] CVMFS is ok
[2025-11-23 00:04:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:04:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:04:22] Further information can be found at the LHC@home message board.
[2025-11-23 00:04:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:04:22] Checking for apptainer binary...
[2025-11-23 00:04:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:04:22] Running /usr/bin/apptainer --version
[2025-11-23 00:04:22] apptainer version 1.4.4-1.el9
[2025-11-23 00:04:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:04:23] c-211-9.aglt2.org
[2025-11-23 00:04:23] apptainer works
[2025-11-23 00:04:23] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:04:23] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:04:23] Starting ATLAS job with PandaID=6895333992
[2025-11-23 00:04:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:00:48] 2025-11-24 02:00:00,989 | INFO     | .. there are 16 such processes running
[2025-11-23 21:00:48] 2025-11-24 02:00:01,624 | INFO     | monitor loop #4437: job 0:6895333992 is in state 'finished'
[2025-11-23 21:00:48] 2025-11-24 02:00:01,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:00:48] 2025-11-24 02:00:01,992 | INFO     | time since job start (75300s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:04,019 | INFO     | time since job start (75303s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:04,137 | INFO     | monitor loop #4438: job 0:6895333992 is in state 'finished'
[2025-11-23 21:00:48] 2025-11-24 02:00:04,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:00:48] 2025-11-24 02:00:06,026 | INFO     | time since job start (75305s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:06,660 | INFO     | monitor loop #4439: job 0:6895333992 is in state 'finished'
[2025-11-23 21:00:48] 2025-11-24 02:00:06,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:00:48] 2025-11-24 02:00:08,033 | INFO     | time since job start (75307s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:09,164 | INFO     | monitor loop #4440: job 0:6895333992 is in state 'finished'
[2025-11-23 21:00:48] 2025-11-24 02:00:09,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:00:48] 2025-11-24 02:00:10,043 | INFO     | time since job start (75309s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:11,669 | INFO     | monitor loop #4441: job 0:6895333992 is in state 'finished'
[2025-11-23 21:00:48] 2025-11-24 02:00:11,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:00:48] 2025-11-24 02:00:12,062 | INFO     | time since job start (75311s) is within the limit (172800.0s)
[2025-11-23 21:00:48] 2025-11-24 02:00:12,105 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 21:00:48] 2025-11-24 02:00:12,194 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2680.734354166667
[2025-11-23 21:00:48] 2025-11-24 02:00:12,304 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895333992/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:00:48] 2025-11-24 02:00:12,305 | INFO     | extracted standard info from prmon json
[2025-11-23 21:00:48] 2025-11-24 02:00:12,305 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:00:48] 2025-11-24 02:00:12,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:00:48] 2025-11-24 02:00:12,561 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:00:48] 2025-11-24 02:00:12,563 | INFO     | sum of square deviations: 581155162852.0312
[2025-11-23 21:00:48] 2025-11-24 02:00:12,750 | INFO     | sum of deviations: 4477714429567.187
[2025-11-23 21:00:48] 2025-11-24 02:00:12,750 | INFO     | mean x: 1763911959.3106246
[2025-11-23 21:00:48] 2025-11-24 02:00:12,750 | INFO     | mean y: 3517810.97080292
[2025-11-23 21:00:48] 2025-11-24 02:00:12,750 | INFO     | intersect: -13587162505.676935
[2025-11-23 21:00:48] 2025-11-24 02:00:12,752 | INFO     | chi2: 14.299486489697717
[2025-11-23 21:00:48] 2025-11-24 02:00:12,759 | INFO     | sum of square deviations: 574116057351.8275
[2025-11-23 21:00:48] 2025-11-24 02:00:12,920 | INFO     | sum of deviations: 4996203874682.665
[2025-11-23 21:00:48] 2025-11-24 02:00:12,920 | INFO     | mean x: 1763911806.848534
[2025-11-23 21:00:48] 2025-11-24 02:00:12,920 | INFO     | mean y: 3529039.4283387624
[2025-11-23 21:00:48] 2025-11-24 02:00:12,920 | INFO     | intersect: -15346787139.891626
[2025-11-23 21:00:48] 2025-11-24 02:00:12,926 | INFO     | chi2: 10.871331989023577
[2025-11-23 21:00:48] 2025-11-24 02:00:12,926 | INFO     | current chi2=10.871331989023577 (change=23.973969297037385 %)
[2025-11-23 21:00:48] 2025-11-24 02:00:12,926 | INFO     | right removable region: 1227
[2025-11-23 21:00:48] 2025-11-24 02:00:12,928 | INFO     | sum of square deviations: 574109129660.5234
[2025-11-23 21:00:48] 2025-11-24 02:00:13,006 | INFO     | sum of deviations: 3933626220700.4956
[2025-11-23 21:00:48] 2025-11-24 02:00:13,006 | INFO     | mean x: 1763912111.84772
[2025-11-23 21:00:48] 2025-11-24 02:00:13,006 | INFO     | mean y: 3529585.895765472
[2025-11-23 21:00:48] 2025-11-24 02:00:13,006 | INFO     | intersect: -12082275317.221214
[2025-11-23 21:00:48] 2025-11-24 02:00:13,008 | INFO     | chi2: 11.023037562874975
[2025-11-23 21:00:48] 2025-11-24 02:00:13,008 | INFO     | current chi2=11.023037562874975 (change=22.913053060914525 %)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,008 | INFO     | left removable region: 10
[2025-11-23 21:00:48] 2025-11-24 02:00:13,010 | INFO     | sum of square deviations: 558817788452.7552
[2025-11-23 21:00:48] 2025-11-24 02:00:13,126 | INFO     | sum of deviations: 4288013502281.3213
[2025-11-23 21:00:48] 2025-11-24 02:00:13,146 | INFO     | mean x: 1763912081.4215283
[2025-11-23 21:00:48] 2025-11-24 02:00:13,146 | INFO     | mean y: 3548873.087099425
[2025-11-23 21:00:48] 2025-11-24 02:00:13,146 | INFO     | intersect: -13531594385.173956
[2025-11-23 21:00:48] 2025-11-24 02:00:13,148 | INFO     | chi2: 6.209340463605993
[2025-11-23 21:00:48] 2025-11-24 02:00:13,148 | INFO     | current memory leak: 7.67 B/s (using 1217 data points, chi2=6.21)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,154 | INFO     | could have reported an average CPU frequency of 2602 MHz (44 samples)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | ..............................
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . Timing measurements:
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . get job = 0 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . initial setup = 5 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . payload setup = 19 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . stage-in = 0 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . payload execution = 75195 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . stage-out = 14 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | . log creation = 5 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,155 | INFO     | ..............................
[2025-11-23 21:00:48] 2025-11-24 02:00:13,533 | INFO     | 
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | job summary report
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | --------------------------------------------------
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | PanDA job id: 6895333992
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | task id: 47556137
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | errors: (none)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | pilot state: finished 
[2025-11-23 21:00:48] 2025-11-24 02:00:13,534 | INFO     | transexitcode: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | exeerrorcode: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | exeerrordiag: 
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | exitcode: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | exitmsg: OK
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | cpuconsumptiontime: 333023 s
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | nevents: 1000
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | neventsw: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | pid: 3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:13,535 | INFO     | pgrp: 3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | corecount: 12
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | event service: False
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | sizes: {0: 2298635, 1: 2298635, 2: 2298862, 3: 2298862, 14: 2298890, 15: 2299180, 24: 2299336, 75221: 2358808, 75223: 2358807, 75238: 2367857, 75240: 2367913, 7527
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | --------------------------------------------------
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | 
[2025-11-23 21:00:48] 2025-11-24 02:00:13,536 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 21:00:48] 2025-11-24 02:00:13,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:00:48] 2025-11-24 02:00:13,563 | INFO     | job 6895333992 has completed (purged errors)
[2025-11-23 21:00:48] 2025-11-24 02:00:13,563 | INFO     | overall cleanup function is called
[2025-11-23 21:00:48] 2025-11-24 02:00:14,583 | INFO     | --- collectZombieJob: --- 10, [3813590]
[2025-11-23 21:00:48] 2025-11-24 02:00:14,583 | INFO     | zombie collector waiting for pid 3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:14,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:00:48] 2025-11-24 02:00:14,584 | INFO     | collected zombie processes
[2025-11-23 21:00:48] 2025-11-24 02:00:14,584 | INFO     | will attempt to kill all subprocesses of pid=3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:15,826 | INFO     | process IDs to be killed: [3813590] (in reverse order)
[2025-11-23 21:00:48] 2025-11-24 02:00:16,003 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:00:48] 2025-11-24 02:00:16,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:00:48] 2025-11-24 02:00:16,116 | INFO     | did not find any defunct processes belonging to 3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:16,237 | INFO     | did not find any defunct processes belonging to 3813590
[2025-11-23 21:00:48] 2025-11-24 02:00:16,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:00:48] 2025-11-24 02:00:16,316 | INFO     | ready for new job
[2025-11-23 21:00:48] 2025-11-24 02:00:16,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:00:48] 2025-11-24 02:00:16,339 | INFO     | ***************************************
[2025-11-23 21:00:48] 2025-11-24 02:00:16,363 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:00:48] 2025-11-24 02:00:16,363 | INFO     | ***************************************
[2025-11-23 21:00:48] 2025-11-24 02:00:16,364 | INFO     | 
[2025-11-23 21:00:48] 2025-11-24 02:00:16,366 | INFO     | architecture information:
[2025-11-23 21:00:48] 2025-11-24 02:00:16,373 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:00:48] 2025-11-24 02:00:16,444 | INFO     | cat /etc/os-release:
[2025-11-23 21:00:48] NAME="CentOS Linux"
[2025-11-23 21:00:48] VERSION="7 (Core)"
[2025-11-23 21:00:48] ID="centos"
[2025-11-23 21:00:48] ID_LIKE="rhel fedora"
[2025-11-23 21:00:48] VERSION_ID="7"
[2025-11-23 21:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:00:48] ANSI_COLOR="0;31"
[2025-11-23 21:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:00:48] HOME_URL="https://www.centos.org/"
[2025-11-23 21:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:00:48] 
[2025-11-23 21:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:00:48] 
[2025-11-23 21:00:48] 2025-11-24 02:00:16,444 | INFO     | ***************************************
[2025-11-23 21:00:48] 2025-11-24 02:00:16,954 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 21:00:48] 2025-11-24 02:00:17,057 | INFO     | sufficient remaining disk space (60273197056 B)
[2025-11-23 21:00:48] 2025-11-24 02:00:17,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:00:48] 2025-11-24 02:00:17,057 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:00:48] 2025-11-24 02:00:17,057 | INFO     | update_server=False
[2025-11-23 21:00:48] 2025-11-24 02:00:17,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:00:48] 2025-11-24 02:00:17,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:00:48] 2025-11-24 02:00:17,653 | INFO     | all data control threads have been joined
[2025-11-23 21:00:48] 2025-11-24 02:00:17,725 | INFO     | all job control threads have been joined
[2025-11-23 21:00:48] 2025-11-24 02:00:17,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:00:48] 2025-11-24 02:00:17,763 | INFO     | aborting loop
[2025-11-23 21:00:48] 2025-11-24 02:00:18,066 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,205 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,332 | INFO     | all payload control threads have been joined
[2025-11-23 21:00:48] 2025-11-24 02:00:18,483 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:00:48] 2025-11-24 02:00:18,667 | INFO     | [data] control thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,717 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,731 | INFO     | [job] control thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,768 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,769 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,778 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:18,849 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:19,252 | INFO     | [job] validate thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:19,334 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:19,341 | INFO     | [payload] control thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:19,589 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:20,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:00:48] 2025-11-24 02:00:20,266 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:00:48] 2025-11-24 02:00:24,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:00:48] 2025-11-24 02:00:25,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909861713728)>', '<ExcThread(monitor, started 139909054572288)>']
[2025-11-23 21:00:48] 2025-11-24 02:00:30,524 | INFO     | all workflow threads have been joined
[2025-11-23 21:00:48] 2025-11-24 02:00:30,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:00:48] 2025-11-24 02:00:30,525 | INFO     | traces error code: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:30,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:00:48] 2025-11-24 02:00:45,704 | INFO     | PID=3806784 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 21:00:48] 2025-11-24 02:00:45,704 | INFO     | .. there are 16 such processes running
[2025-11-23 21:00:48] 2025-11-24 02:00:45,704 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:00:48] 2025-11-24 02:00:45,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:00:48] 2025-11-24 02:00:45,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:00:48] 2025-11-24 02:00:45,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:00:48] 2025-11-24 02:00:45,705 | INFO     | [monitor] control thread has ended
[2025-11-23 21:00:48] 2025-11-24 02:00:46,459 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:00:48] 2025-11-24 02:00:46,480 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:00:48] 2025-11-24 02:00:46,512 [wrapper] pilotpid: 3806784
[2025-11-23 21:00:48] 2025-11-24 02:00:46,544 [wrapper] Pilot exit status: 0
[2025-11-23 21:00:48] 2025-11-24 02:00:46,848 [wrapper] pandaids: 6895333992
[2025-11-23 21:00:48] 2025-11-24 02:00:47,032 [wrapper] cleanup supervisor_pilot 1700163 3806785
[2025-11-23 21:00:48] 2025-11-24 02:00:47,037 [wrapper] Test setup, not cleaning
[2025-11-23 21:00:48] 2025-11-24 02:00:47,041 [wrapper] apfmon messages muted
[2025-11-23 21:00:48] 2025-11-24 02:00:47,066 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:00:48] 2025-11-24 02:00:47,134 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:00:48]  *** Error codes and diagnostics ***
[2025-11-23 21:00:48]     "exeErrorCode": 0,
[2025-11-23 21:00:48]     "exeErrorDiag": "",
[2025-11-23 21:00:48]     "pilotErrorCode": 0,
[2025-11-23 21:00:48]     "pilotErrorDiag": "",
[2025-11-23 21:00:48]  *** Listing of results directory ***
[2025-11-23 21:00:48] total 1318624
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 21:10 pilot3.tar.gz
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 21:12 queuedata.json
[2025-11-23 21:00:48] -rwx------. 1 boincer umatlas     36292 Nov 21 21:13 runpilot2-wrapper.sh
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:00:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:04 run_atlas
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:04 job.xml
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas 409523283 Nov 23 00:04 EVNT.47483658._000217.pool.root.1
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-23 21:00:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:04 shared
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 00:04 input.tar.gz
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:04 boinc_lockfile
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:04 pandaJob.out
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas        57 Nov 23 00:04 setup.sh.local
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas    989784 Nov 23 00:04 agis_schedconf.cvmfs.json
[2025-11-23 21:00:48] drwx------. 5 boincer umatlas      4096 Nov 23 00:05 pilot3
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas       533 Nov 23 20:31 boinc_task_state.xml
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas      6614 Nov 23 20:56 init_data.xml
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas 912409898 Nov 23 20:58 HITS.47556137._002140.pool.root.1
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas      1071 Nov 23 20:59 memory_monitor_summary.json
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas   1526164 Nov 23 20:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas   2767609 Nov 23 20:59 log.47556137._002140.job.log.tgz.1
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas        95 Nov 23 20:59 pilot_heartbeat.json
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas      8652 Nov 23 21:00 heartbeat.json
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 21:00 boinc_mmap_file
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas        29 Nov 23 21:00 wrapper_checkpoint.txt
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas       823 Nov 23 21:00 pilotlog.txt
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas   9438824 Nov 23 21:00 log.47556137._002140.job.log.1
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas       353 Nov 23 21:00 output.list
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas       620 Nov 23 21:00 runtime_log
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas  12226560 Nov 23 21:00 result.tar.gz
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas      9340 Nov 23 21:00 runtime_log.err
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas       665 Nov 23 21:00 kHDLDmAJsg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFsJKDmpko7En.diag
[2025-11-23 21:00:48] -rw-r--r--. 1 boincer umatlas     21799 Nov 23 21:00 stderr.txt
[2025-11-23 21:00:48] HITS file was successfully produced:
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas 912409898 Nov 23 20:58 shared/HITS.pool.root.1
[2025-11-23 21:00:48]  *** Contents of shared directory: ***
[2025-11-23 21:00:48] total 1303500
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas 409523283 Nov 23 00:04 ATLAS.root_0
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-23 21:00:48] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 00:04 input.tar.gz
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas 912409898 Nov 23 20:58 HITS.pool.root.1
[2025-11-23 21:00:48] -rw-------. 1 boincer umatlas  12226560 Nov 23 21:00 result.tar.gz
21:00:50 (3802035): run_atlas exited; CPU time 334265.448738
21:00:50 (3802035): called boinc_finish(0)

</stderr_txt>
]]>

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