Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:06:23 (1194140): wrapper (7.7.26015): starting
14:06:23 (1194140): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 14:06:23] Arguments: --nthreads 3
[2025-11-22 14:06:23] Threads: 3
[2025-11-22 14:06:23] Checking for CVMFS
[2025-11-22 14:06:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:06:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:06:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:06:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:06:23] 2.9.2.0 1027257 35 55332 153172 0 88 34681544 36864000 0 130560 0 501150 100.000 1296 4153 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 14:06:23] CVMFS is ok
[2025-11-22 14:06:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:06:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:06:23] Further information can be found at the LHC@home message board.
[2025-11-22 14:06:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:06:23] Checking for apptainer binary...
[2025-11-22 14:06:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:06:23] Running /usr/bin/apptainer --version
[2025-11-22 14:06:23] apptainer version 1.4.1-1.1
[2025-11-22 14:06:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:06:23] thA335
[2025-11-22 14:06:23] apptainer works
[2025-11-22 14:06:23] Set ATHENA_PROC_NUMBER=3
[2025-11-22 14:06:23] Set ATHENA_CORE_NUMBER=3
[2025-11-22 14:06:23] Starting ATLAS job with PandaID=6894274138
[2025-11-22 14:06:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:10:42]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:10:42] 2025-11-22 13:09:50,750 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:10:42] 2025-11-22 13:09:50,750 | INFO     | update_server=False
[2025-11-22 14:10:42] 2025-11-22 13:09:50,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:10:42] 2025-11-22 13:09:50,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:10:42] 2025-11-22 13:09:51,072 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:10:42] 2025-11-22 13:09:51,176 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:10:42] 2025-11-22 13:09:51,177 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:10:42] 2025-11-22 13:09:51,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:10:42] 2025-11-22 13:09:51,177 | INFO     | will abort loop
[2025-11-22 14:10:42] 2025-11-22 13:09:51,404 | INFO     | all data control threads have been joined
[2025-11-22 14:10:42] 2025-11-22 13:09:51,749 | INFO     | all payload control threads have been joined
[2025-11-22 14:10:42] 2025-11-22 13:09:51,757 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:51,757 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,183 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,292 | INFO     | all job control threads have been joined
[2025-11-22 14:10:42] 2025-11-22 13:09:52,320 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,410 | INFO     | [data] control thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,481 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,709 | INFO     | [job] validate thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,755 | INFO     | [payload] control thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,844 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:52,971 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:53,072 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:53,078 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:53,298 | INFO     | [job] control thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:09:53,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:10:42] 2025-11-22 13:09:57,397 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:10:42] 2025-11-22 13:10:21,186 | INFO     | PID=1197878 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:10:42] 2025-11-22 13:10:21,186 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:10:42] 2025-11-22 13:10:21,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:10:42] 2025-11-22 13:10:21,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:10:42] 2025-11-22 13:10:35,893 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:10:42] 2025-11-22 13:10:37,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471143728960)>', '<ExcThread(monitor, started 140470504113920)>']
[2025-11-22 14:10:42] 2025-11-22 13:10:37,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:10:42] 2025-11-22 13:10:37,272 | INFO     | [monitor] control thread has ended
[2025-11-22 14:10:42] 2025-11-22 13:10:42,279 | INFO     | all workflow threads have been joined
[2025-11-22 14:10:42] 2025-11-22 13:10:42,279 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:10:42] 2025-11-22 13:10:42,280 | INFO     | traces error code: 0
[2025-11-22 14:10:42] 2025-11-22 13:10:42,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:10:42] 2025-11-22 13:10:42,328 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:10:42] 2025-11-22 13:10:42,331 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:10:42] 2025-11-22 13:10:42,334 [wrapper] pilotpid: 1197878
[2025-11-22 14:10:42] 2025-11-22 13:10:42,337 [wrapper] Pilot exit status: 0
[2025-11-22 14:10:42] 2025-11-22 13:10:42,344 [wrapper] pandaids: 6894274138
[2025-11-22 14:10:42] 2025-11-22 13:10:42,360 [wrapper] cleanup supervisor_pilot 1197884 1197879
[2025-11-22 14:10:42] 2025-11-22 13:10:42,362 [wrapper] Test setup, not cleaning
[2025-11-22 14:10:42] 2025-11-22 13:10:42,365 [wrapper] apfmon messages muted
[2025-11-22 14:10:42] 2025-11-22 13:10:42,367 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:10:42] 2025-11-22 13:10:42,370 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:10:42]  *** Error codes and diagnostics ***
[2025-11-22 14:10:42]     "exeErrorCode": 65,
[2025-11-22 14:10:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 14:10:42]     "pilotErrorCode": 1305,
[2025-11-22 14:10:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 14:10:42]  *** Listing of results directory ***
[2025-11-22 14:10:42] total 403860
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc    576529 Nov 21 08:07 pilot3.tar.gz
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      5112 Nov 21 08:20 queuedata.json
[2025-11-22 14:10:42] -rwx------ 1 boinc boinc     36292 Nov 21 08:21 runpilot2-wrapper.sh
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc       100 Nov 22 14:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:10:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 14:06 run_atlas
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc       105 Nov 22 14:06 job.xml
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc 409351175 Nov 22 14:06 EVNT.47493127._002303.pool.root.1
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc    590103 Nov 22 14:06 input.tar.gz
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:06 start_atlas.sh
[2025-11-22 14:10:42] drwxrwx--x 2 boinc boinc      4096 Nov 22 14:06 shared
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:06 boinc_setup_complete
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      6194 Nov 22 14:06 init_data.xml
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:06 boinc_lockfile
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      2782 Nov 22 14:06 pandaJob.out
[2025-11-22 14:10:42] -rw------- 1 boinc boinc    989768 Nov 22 14:06 agis_schedconf.cvmfs.json
[2025-11-22 14:10:42] -rw------- 1 boinc boinc   1526164 Nov 22 14:06 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:10:42] drwx------ 5 boinc boinc      4096 Nov 22 14:06 pilot3
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc       523 Nov 22 14:07 boinc_task_state.xml
[2025-11-22 14:10:42] -rw------- 1 boinc boinc       961 Nov 22 14:07 memory_monitor_summary.json
[2025-11-22 14:10:42] -rw------- 1 boinc boinc     56118 Nov 22 14:07 log.47533967._002741.job.log.tgz.1
[2025-11-22 14:10:42] -rw------- 1 boinc boinc        95 Nov 22 14:09 pilot_heartbeat.json
[2025-11-22 14:10:42] -rw------- 1 boinc boinc      8398 Nov 22 14:09 heartbeat.json
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc        23 Nov 22 14:10 wrapper_checkpoint.txt
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      8192 Nov 22 14:10 boinc_mmap_file
[2025-11-22 14:10:42] -rw------- 1 boinc boinc      4938 Nov 22 14:10 pilotlog.txt
[2025-11-22 14:10:42] -rw------- 1 boinc boinc     93621 Nov 22 14:10 log.47533967._002741.job.log.1
[2025-11-22 14:10:42] -rw------- 1 boinc boinc       186 Nov 22 14:10 output.list
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc       620 Nov 22 14:10 runtime_log
[2025-11-22 14:10:42] -rw------- 1 boinc boinc    174080 Nov 22 14:10 result.tar.gz
[2025-11-22 14:10:42] -rw------- 1 boinc boinc       649 Nov 22 14:10 wLiKDmRdag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyQHKDmjVZ0Un.diag
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      8744 Nov 22 14:10 runtime_log.err
[2025-11-22 14:10:42] -rw-r--r-- 1 boinc boinc      8120 Nov 22 14:10 stderr.txt
[2025-11-22 14:10:42] No HITS result produced
[2025-11-22 14:10:42]  *** Contents of shared directory: ***
[2025-11-22 14:10:42] total 400532
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc 409351175 Nov 22 14:06 ATLAS.root_0
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc    590103 Nov 22 14:06 input.tar.gz
[2025-11-22 14:10:42] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:06 start_atlas.sh
[2025-11-22 14:10:42] -rw------- 1 boinc boinc    174080 Nov 22 14:10 result.tar.gz
14:10:44 (1194140): run_atlas exited; CPU time 31.335415
14:10:44 (1194140): called boinc_finish(0)

</stderr_txt>
]]>

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