Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:34:08 (1050528): wrapper (7.7.26015): starting
07:34:08 (1050528): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 07:34:08] Arguments: --nthreads 3
[2025-11-25 07:34:08] Threads: 3
[2025-11-25 07:34:08] Checking for CVMFS
[2025-11-25 07:34:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:34:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:34:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:34:08] 2.9.2.0 3973621 9519 91244 153273 1 81 34916812 36864000 0 130560 0 3537833 99.845 600258 8278 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 07:34:08] CVMFS is ok
[2025-11-25 07:34:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:34:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:34:08] Further information can be found at the LHC@home message board.
[2025-11-25 07:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:34:08] Checking for apptainer binary...
[2025-11-25 07:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:34:08] Running /usr/bin/apptainer --version
[2025-11-25 07:34:08] apptainer version 1.4.1-1.1
[2025-11-25 07:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:34:08] magicA246
[2025-11-25 07:34:08] apptainer works
[2025-11-25 07:34:08] Set ATHENA_PROC_NUMBER=3
[2025-11-25 07:34:08] Set ATHENA_CORE_NUMBER=3
[2025-11-25 07:34:08] Starting ATLAS job with PandaID=6895327200
[2025-11-25 07:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:34:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:34:54] 2025-11-25 14:34:23,383 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:34:54] 2025-11-25 14:34:23,383 | INFO     | ready for new job
[2025-11-25 15:34:54] 2025-11-25 14:34:23,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:34:54] 2025-11-25 14:34:23,384 | INFO     | ***************************************
[2025-11-25 15:34:54] 2025-11-25 14:34:23,384 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:34:54] 2025-11-25 14:34:23,384 | INFO     | ***************************************
[2025-11-25 15:34:54] 2025-11-25 14:34:23,384 | INFO     | 
[2025-11-25 15:34:54] 2025-11-25 14:34:23,384 | INFO     | architecture information:
[2025-11-25 15:34:54] 2025-11-25 14:34:23,385 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:34:54] 2025-11-25 14:34:23,394 | INFO     | cat /etc/os-release:
[2025-11-25 15:34:54] NAME="CentOS Linux"
[2025-11-25 15:34:54] VERSION="7 (Core)"
[2025-11-25 15:34:54] ID="centos"
[2025-11-25 15:34:54] ID_LIKE="rhel fedora"
[2025-11-25 15:34:54] VERSION_ID="7"
[2025-11-25 15:34:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:34:54] ANSI_COLOR="0;31"
[2025-11-25 15:34:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:34:54] HOME_URL="https://www.centos.org/"
[2025-11-25 15:34:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:34:54] 
[2025-11-25 15:34:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:34:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:34:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:34:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:34:54] 
[2025-11-25 15:34:54] 2025-11-25 14:34:23,394 | INFO     | ***************************************
[2025-11-25 15:34:54] 2025-11-25 14:34:23,897 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | INFO     | sufficient remaining disk space (366631452672 B)
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | INFO     | update_server=False
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:34:54] 2025-11-25 14:34:23,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:34:54] 2025-11-25 14:34:23,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:34:54] 2025-11-25 14:34:24,266 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:34:54] 2025-11-25 14:34:24,266 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:34:54] 2025-11-25 14:34:24,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:34:54] 2025-11-25 14:34:24,266 | INFO     | will abort loop
[2025-11-25 15:34:54] 2025-11-25 14:34:24,303 | INFO     | all data control threads have been joined
[2025-11-25 15:34:54] 2025-11-25 14:34:24,915 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:24,916 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,064 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,239 | INFO     | [job] validate thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,242 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,243 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,272 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,277 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,309 | INFO     | [data] control thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,350 | INFO     | all job control threads have been joined
[2025-11-25 15:34:54] 2025-11-25 14:34:25,355 | INFO     | all payload control threads have been joined
[2025-11-25 15:34:54] 2025-11-25 14:34:25,753 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,810 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:25,917 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:26,356 | INFO     | [job] control thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:26,356 | INFO     | [payload] control thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:27,918 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:34,642 | INFO     | job.realtimelogging is not enabled
[2025-11-25 15:34:54] 2025-11-25 14:34:35,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:34:54] 2025-11-25 14:34:49,653 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:34:54] 2025-11-25 14:34:49,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667333015360)>', '<ExcThread(monitor, started 139666539923200)>']
[2025-11-25 15:34:54] 2025-11-25 14:34:53,620 | INFO     | PID=1054252 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:34:54] 2025-11-25 14:34:53,621 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:34:54] 2025-11-25 14:34:53,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:34:54] 2025-11-25 14:34:53,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:34:54] 2025-11-25 14:34:53,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:34:54] 2025-11-25 14:34:53,621 | INFO     | [monitor] control thread has ended
[2025-11-25 15:34:54] 2025-11-25 14:34:54,811 | INFO     | all workflow threads have been joined
[2025-11-25 15:34:54] 2025-11-25 14:34:54,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:34:54] 2025-11-25 14:34:54,811 | INFO     | traces error code: 0
[2025-11-25 15:34:54] 2025-11-25 14:34:54,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:34:54] 2025-11-25 14:34:54,866 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:34:54] 2025-11-25 14:34:54,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:34:54] 2025-11-25 14:34:54,871 [wrapper] pilotpid: 1054252
[2025-11-25 15:34:54] 2025-11-25 14:34:54,873 [wrapper] Pilot exit status: 0
[2025-11-25 15:34:54] 2025-11-25 14:34:54,881 [wrapper] pandaids: 6895327200
[2025-11-25 15:34:54] 2025-11-25 14:34:54,898 [wrapper] cleanup supervisor_pilot 1112117 1054253
[2025-11-25 15:34:54] 2025-11-25 14:34:54,901 [wrapper] Test setup, not cleaning
[2025-11-25 15:34:54] 2025-11-25 14:34:54,904 [wrapper] apfmon messages muted
[2025-11-25 15:34:54] 2025-11-25 14:34:54,906 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:34:54] 2025-11-25 14:34:54,909 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:34:54]  *** Error codes and diagnostics ***
[2025-11-25 15:34:54]     "exeErrorCode": 0,
[2025-11-25 15:34:54]     "exeErrorDiag": "",
[2025-11-25 15:34:54]     "pilotErrorCode": 0,
[2025-11-25 15:34:54]     "pilotErrorDiag": "",
[2025-11-25 15:34:54]  *** Listing of results directory ***
[2025-11-25 15:34:54] total 1310680
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc    576529 Nov 21 16:44 pilot3.tar.gz
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc      5112 Nov 21 16:49 queuedata.json
[2025-11-25 15:34:54] -rwx------ 1 boinc boinc     36292 Nov 21 16:50 runpilot2-wrapper.sh
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc       100 Nov 25 07:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:34:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 07:34 run_atlas
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc       105 Nov 25 07:34 job.xml
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc 409253122 Nov 25 07:34 EVNT.47483658._000049.pool.root.1
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc    590098 Nov 25 07:34 input.tar.gz
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:34 start_atlas.sh
[2025-11-25 15:34:54] drwxrwx--x 2 boinc boinc      4096 Nov 25 07:34 shared
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:34 boinc_setup_complete
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc      6449 Nov 25 07:34 init_data.xml
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:34 boinc_lockfile
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc      2784 Nov 25 07:34 pandaJob.out
[2025-11-25 15:34:54] -rw------- 1 boinc boinc    991801 Nov 25 07:34 agis_schedconf.cvmfs.json
[2025-11-25 15:34:54] drwx------ 5 boinc boinc      4096 Nov 25 07:34 pilot3
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc       531 Nov 25 15:31 boinc_task_state.xml
[2025-11-25 15:34:54] -rw------- 1 boinc boinc 918514393 Nov 25 15:33 HITS.47556137._000486.pool.root.1
[2025-11-25 15:34:54] -rw------- 1 boinc boinc      1022 Nov 25 15:34 memory_monitor_summary.json
[2025-11-25 15:34:54] -rw------- 1 boinc boinc   1516240 Nov 25 15:34 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:34:54] -rw------- 1 boinc boinc   1172919 Nov 25 15:34 log.47556137._000486.job.log.tgz.1
[2025-11-25 15:34:54] -rw------- 1 boinc boinc      8560 Nov 25 15:34 heartbeat.json
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc      8192 Nov 25 15:34 boinc_mmap_file
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc        28 Nov 25 15:34 wrapper_checkpoint.txt
[2025-11-25 15:34:54] -rw------- 1 boinc boinc        95 Nov 25 15:34 pilot_heartbeat.json
[2025-11-25 15:34:54] -rw------- 1 boinc boinc      5010 Nov 25 15:34 pilotlog.txt
[2025-11-25 15:34:54] -rw------- 1 boinc boinc   4055689 Nov 25 15:34 log.47556137._000486.job.log.1
[2025-11-25 15:34:54] -rw------- 1 boinc boinc       353 Nov 25 15:34 output.list
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc       620 Nov 25 15:34 runtime_log
[2025-11-25 15:34:54] -rw------- 1 boinc boinc   5253120 Nov 25 15:34 result.tar.gz
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc      8913 Nov 25 15:34 runtime_log.err
[2025-11-25 15:34:54] -rw------- 1 boinc boinc       668 Nov 25 15:34 LixKDm4Zig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0hHKDmt1sWHo.diag
[2025-11-25 15:34:54] -rw-r--r-- 1 boinc boinc     10076 Nov 25 15:34 stderr.txt
[2025-11-25 15:34:54] HITS file was successfully produced:
[2025-11-25 15:34:54] -rw------- 1 boinc boinc 918514393 Nov 25 15:33 shared/HITS.pool.root.1
[2025-11-25 15:34:54]  *** Contents of shared directory: ***
[2025-11-25 15:34:54] total 1302384
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc 409253122 Nov 25 07:34 ATLAS.root_0
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc    590098 Nov 25 07:34 input.tar.gz
[2025-11-25 15:34:54] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:34 start_atlas.sh
[2025-11-25 15:34:54] -rw------- 1 boinc boinc 918514393 Nov 25 15:33 HITS.pool.root.1
[2025-11-25 15:34:54] -rw------- 1 boinc boinc   5253120 Nov 25 15:34 result.tar.gz
15:34:56 (1050528): run_atlas exited; CPU time 85072.112291
15:34:56 (1050528): called boinc_finish(0)

</stderr_txt>
]]>

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