Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:59:10 (14839): wrapper (7.7.26015): starting
07:59:10 (14839): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 07:59:10] Arguments: --nthreads 12
[2025-11-22 07:59:10] Threads: 12
[2025-11-22 07:59:10] Checking for CVMFS
[2025-11-22 07:59:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:59:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:59:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:59:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:59:10] 2.11.2.0 14820 137297 94524 153172 3 81 10471474 20275201 1 130560 0 67055376 99.961 5539191 35712 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:59:10] CVMFS is ok
[2025-11-22 07:59:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:59:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:59:10] Further information can be found at the LHC@home message board.
[2025-11-22 07:59:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:59:10] Checking for apptainer binary...
[2025-11-22 07:59:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:59:10] Running /usr/bin/apptainer --version
[2025-11-22 07:59:10] apptainer version 1.3.2-1.el7
[2025-11-22 07:59:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:59:11] c-205-27.aglt2.org
[2025-11-22 07:59:11] apptainer works
[2025-11-22 07:59:11] Set ATHENA_PROC_NUMBER=12
[2025-11-22 07:59:11] Set ATHENA_CORE_NUMBER=12
[2025-11-22 07:59:11] Starting ATLAS job with PandaID=6895325982
[2025-11-22 07:59:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:12:41 (30709): wrapper (7.7.26015): starting
12:12:41 (30709): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 12:12:41] Arguments: --nthreads 12
[2025-11-22 12:12:41] Threads: 12
[2025-11-22 12:12:41] This job has been restarted, cleaning up previous attempt
[2025-11-22 12:12:41] Checking for CVMFS
[2025-11-22 12:12:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 12:12:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 12:12:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 12:12:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 12:12:41] 2.11.2.0 14820 137550 92888 153179 2 1 10798696 20275200 1 130560 0 67177816 99.961 5551037 35728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 12:12:41] CVMFS is ok
[2025-11-22 12:12:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 12:12:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 12:12:41] Further information can be found at the LHC@home message board.
[2025-11-22 12:12:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 12:12:41] Checking for apptainer binary...
[2025-11-22 12:12:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 12:12:41] Running /usr/bin/apptainer --version
[2025-11-22 12:12:41] apptainer version 1.3.2-1.el7
[2025-11-22 12:12:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 12:12:43] c-205-27.aglt2.org
[2025-11-22 12:12:43] apptainer works
[2025-11-22 12:12:43] Set ATHENA_PROC_NUMBER=12
[2025-11-22 12:12:43] Set ATHENA_CORE_NUMBER=12
[2025-11-22 12:12:43] Starting ATLAS job with PandaID=6895325982
[2025-11-22 12:12:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:26:46]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:26:46] 2025-11-23 00:26:09,743 | INFO     | extracted standard info from prmon json
[2025-11-22 19:26:46] 2025-11-23 00:26:09,744 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:26:46] 2025-11-23 00:26:09,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:26:46] 2025-11-23 00:26:09,752 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:26:46] 2025-11-23 00:26:09,752 | INFO     | sum of square deviations: 23971998919.577385
[2025-11-22 19:26:46] 2025-11-23 00:26:09,756 | INFO     | sum of deviations: 331882113555.535
[2025-11-22 19:26:46] 2025-11-23 00:26:09,756 | INFO     | mean x: 1763844570.7605634
[2025-11-22 19:26:46] 2025-11-23 00:26:09,756 | INFO     | mean y: 3411084.436619718
[2025-11-22 19:26:46] 2025-11-23 00:26:09,757 | INFO     | intersect: -24416265643.03886
[2025-11-22 19:26:46] 2025-11-23 00:26:09,757 | INFO     | chi2: 7.011051747129311
[2025-11-22 19:26:46] 2025-11-23 00:26:09,758 | INFO     | sum of square deviations: 23137812481.73401
[2025-11-22 19:26:46] 2025-11-23 00:26:09,761 | INFO     | sum of deviations: 506364777925.0547
[2025-11-22 19:26:46] 2025-11-23 00:26:09,762 | INFO     | mean x: 1763844418.263658
[2025-11-22 19:26:46] 2025-11-23 00:26:09,762 | INFO     | mean y: 3442954.9904988124
[2025-11-22 19:26:46] 2025-11-23 00:26:09,762 | INFO     | intersect: -38597815822.32541
[2025-11-22 19:26:46] 2025-11-23 00:26:09,762 | INFO     | chi2: 3.538892585890691
[2025-11-22 19:26:46] 2025-11-23 00:26:09,762 | INFO     | current chi2=3.538892585890691 (change=49.524084067134474 %)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,763 | INFO     | sum of square deviations: 22323207806.38221
[2025-11-22 19:26:46] 2025-11-23 00:26:09,767 | INFO     | sum of deviations: 593608849654.6587
[2025-11-22 19:26:46] 2025-11-23 00:26:09,767 | INFO     | mean x: 1763844265.7668269
[2025-11-22 19:26:46] 2025-11-23 00:26:09,767 | INFO     | mean y: 3459266.1201923075
[2025-11-22 19:26:46] 2025-11-23 00:26:09,767 | INFO     | intersect: -46899905817.12134
[2025-11-22 19:26:46] 2025-11-23 00:26:09,768 | INFO     | chi2: 2.525536120259114
[2025-11-22 19:26:46] 2025-11-23 00:26:09,768 | INFO     | current chi2=2.525536120259114 (change=28.634846665642122 %)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,768 | INFO     | sum of square deviations: 21527927198.55965
[2025-11-22 19:26:46] 2025-11-23 00:26:09,772 | INFO     | sum of deviations: 586435638357.0658
[2025-11-22 19:26:46] 2025-11-23 00:26:09,772 | INFO     | mean x: 1763844113.2676399
[2025-11-22 19:26:46] 2025-11-23 00:26:09,772 | INFO     | mean y: 3457878.3357664235
[2025-11-22 19:26:46] 2025-11-23 00:26:09,772 | INFO     | intersect: -48044876686.622604
[2025-11-22 19:26:46] 2025-11-23 00:26:09,773 | INFO     | chi2: 2.4969464583425065
[2025-11-22 19:26:46] 2025-11-23 00:26:09,773 | INFO     | current chi2=2.4969464583425065 (change=1.1320234815597991 %)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,773 | INFO     | right removable region: 410
[2025-11-22 19:26:46] 2025-11-23 00:26:09,774 | INFO     | sum of square deviations: 23137770635.25887
[2025-11-22 19:26:46] 2025-11-23 00:26:09,777 | INFO     | sum of deviations: 195519266566.59137
[2025-11-22 19:26:46] 2025-11-23 00:26:09,778 | INFO     | mean x: 1763844723.2612827
[2025-11-22 19:26:46] 2025-11-23 00:26:09,778 | INFO     | mean y: 3435930.349168646
[2025-11-22 19:26:46] 2025-11-23 00:26:09,778 | INFO     | intersect: -14901441123.96259
[2025-11-22 19:26:46] 2025-11-23 00:26:09,778 | INFO     | chi2: 4.736221248977172
[2025-11-22 19:26:46] 2025-11-23 00:26:09,778 | INFO     | current chi2=4.736221248977172 (change=32.446351563209795 %)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,779 | INFO     | sum of square deviations: 22323098554.913456
[2025-11-22 19:26:46] 2025-11-23 00:26:09,783 | INFO     | sum of deviations: 156237206344.92816
[2025-11-22 19:26:46] 2025-11-23 00:26:09,783 | INFO     | mean x: 1763844875.7644231
[2025-11-22 19:26:46] 2025-11-23 00:26:09,783 | INFO     | mean y: 3443276.887019231
[2025-11-22 19:26:46] 2025-11-23 00:26:09,783 | INFO     | intersect: -12341536302.777733
[2025-11-22 19:26:46] 2025-11-23 00:26:09,783 | INFO     | chi2: 4.642856038147538
[2025-11-22 19:26:46] 2025-11-23 00:26:09,784 | INFO     | current chi2=4.642856038147538 (change=1.9713017175833403 %)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,784 | INFO     | left removable region: 20
[2025-11-22 19:26:46] 2025-11-23 00:26:09,784 | INFO     | sum of square deviations: 18393703428.143654
[2025-11-22 19:26:46] 2025-11-23 00:26:09,787 | INFO     | sum of deviations: 356342444668.723
[2025-11-22 19:26:46] 2025-11-23 00:26:09,788 | INFO     | mean x: 1763844692.774359
[2025-11-22 19:26:46] 2025-11-23 00:26:09,788 | INFO     | mean y: 3502988.292307692
[2025-11-22 19:26:46] 2025-11-23 00:26:09,788 | INFO     | intersect: -34167578017.4756
[2025-11-22 19:26:46] 2025-11-23 00:26:09,788 | INFO     | chi2: 0.044505050611526924
[2025-11-22 19:26:46] 2025-11-23 00:26:09,788 | INFO     | current memory leak: 19.37 B/s (using 390 data points, chi2=0.04)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | could have reported an average CPU frequency of 2408 MHz (18 samples)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | ..............................
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | . Timing measurements:
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | . get job = 0 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | . initial setup = 2 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | . payload setup = 7 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,789 | INFO     | . stage-in = 0 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,790 | INFO     | . payload execution = 25952 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,790 | INFO     | . stage-out = 3 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,790 | INFO     | . log creation = 0 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,790 | INFO     | ..............................
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | 
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | job summary report
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | --------------------------------------------------
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | PanDA job id: 6895325982
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | task id: 47556149
[2025-11-22 19:26:46] 2025-11-23 00:26:09,870 | INFO     | errors: (none)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | pilot state: finished 
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | transexitcode: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | exeerrorcode: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | exeerrordiag: 
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | exitcode: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | exitmsg: OK
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | cpuconsumptiontime: 296611 s
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | nevents: 1000
[2025-11-22 19:26:46] 2025-11-23 00:26:09,871 | INFO     | neventsw: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | pid: 8543
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | pgrp: 8543
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | corecount: 12
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | event service: False
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | sizes: {0: 2298802, 5: 2299064, 11: 2299120, 25963: 2336438, 25967: 2345488, 25975: 2345678}
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | --------------------------------------------------
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | 
[2025-11-22 19:26:46] 2025-11-23 00:26:09,872 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:26:46] 2025-11-23 00:26:09,896 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:26:46] 2025-11-23 00:26:09,899 | INFO     | job 6895325982 has completed (purged errors)
[2025-11-22 19:26:46] 2025-11-23 00:26:09,900 | INFO     | overall cleanup function is called
[2025-11-22 19:26:46] 2025-11-23 00:26:10,917 | INFO     | --- collectZombieJob: --- 10, [8543]
[2025-11-22 19:26:46] 2025-11-23 00:26:10,917 | INFO     | zombie collector waiting for pid 8543
[2025-11-22 19:26:46] 2025-11-23 00:26:10,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:26:46] 2025-11-23 00:26:10,926 | INFO     | collected zombie processes
[2025-11-22 19:26:46] 2025-11-23 00:26:10,926 | INFO     | will attempt to kill all subprocesses of pid=8543
[2025-11-22 19:26:46] 2025-11-23 00:26:11,014 | INFO     | process IDs to be killed: [8543] (in reverse order)
[2025-11-22 19:26:46] 2025-11-23 00:26:11,066 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:26:46] 2025-11-23 00:26:11,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:26:46] 2025-11-23 00:26:11,069 | INFO     | did not find any defunct processes belonging to 8543
[2025-11-22 19:26:46] 2025-11-23 00:26:11,071 | INFO     | did not find any defunct processes belonging to 8543
[2025-11-22 19:26:46] 2025-11-23 00:26:11,073 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:26:46] 2025-11-23 00:26:11,073 | INFO     | ready for new job
[2025-11-22 19:26:46] 2025-11-23 00:26:11,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:26:46] 2025-11-23 00:26:11,075 | INFO     | ***************************************
[2025-11-22 19:26:46] 2025-11-23 00:26:11,076 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:26:46] 2025-11-23 00:26:11,076 | INFO     | ***************************************
[2025-11-22 19:26:46] 2025-11-23 00:26:11,076 | INFO     | 
[2025-11-22 19:26:46] 2025-11-23 00:26:11,076 | INFO     | architecture information:
[2025-11-22 19:26:46] 2025-11-23 00:26:11,077 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:26:46] 2025-11-23 00:26:11,093 | INFO     | cat /etc/os-release:
[2025-11-22 19:26:46] NAME="CentOS Linux"
[2025-11-22 19:26:46] VERSION="7 (Core)"
[2025-11-22 19:26:46] ID="centos"
[2025-11-22 19:26:46] ID_LIKE="rhel fedora"
[2025-11-22 19:26:46] VERSION_ID="7"
[2025-11-22 19:26:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:26:46] ANSI_COLOR="0;31"
[2025-11-22 19:26:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:26:46] HOME_URL="https://www.centos.org/"
[2025-11-22 19:26:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:26:46] 
[2025-11-22 19:26:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:26:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:26:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:26:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:26:46] 
[2025-11-22 19:26:46] 2025-11-23 00:26:11,093 | INFO     | ***************************************
[2025-11-22 19:26:46] 2025-11-23 00:26:11,594 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:26:46] 2025-11-23 00:26:11,611 | INFO     | sufficient remaining disk space (27840741376 B)
[2025-11-22 19:26:46] 2025-11-23 00:26:11,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:26:46] 2025-11-23 00:26:11,612 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:26:46] 2025-11-23 00:26:11,612 | INFO     | update_server=False
[2025-11-22 19:26:46] 2025-11-23 00:26:11,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:26:46] 2025-11-23 00:26:11,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:26:46] 2025-11-23 00:26:11,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:26:46] 2025-11-23 00:26:11,613 | INFO     | aborting loop
[2025-11-22 19:26:46] 2025-11-23 00:26:11,760 | INFO     | all data control threads have been joined
[2025-11-22 19:26:46] 2025-11-23 00:26:12,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:26:46] 2025-11-23 00:26:12,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:26:46] 2025-11-23 00:26:12,586 | INFO     | all payload control threads have been joined
[2025-11-22 19:26:46] 2025-11-23 00:26:12,616 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:12,618 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:12,618 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:12,619 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:12,766 | INFO     | [data] control thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:12,957 | INFO     | all job control threads have been joined
[2025-11-22 19:26:46] 2025-11-23 00:26:13,052 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,137 | INFO     | [job] validate thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,142 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,378 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,592 | INFO     | [payload] control thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,726 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,909 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:13,963 | INFO     | [job] control thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:14,240 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:16,325 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:26:46] 2025-11-23 00:26:40,285 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:26:46] 2025-11-23 00:26:41,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229825025856)>', '<ExcThread(monitor, started 140228710876928)>']
[2025-11-22 19:26:46] 2025-11-23 00:26:42,124 | INFO     | PID=2070 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 19:26:46] 2025-11-23 00:26:42,124 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:26:46] 2025-11-23 00:26:42,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:26:46] 2025-11-23 00:26:42,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:26:46] 2025-11-23 00:26:42,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:26:46] 2025-11-23 00:26:42,125 | INFO     | [monitor] control thread has ended
[2025-11-22 19:26:46] 2025-11-23 00:26:46,316 | INFO     | all workflow threads have been joined
[2025-11-22 19:26:46] 2025-11-23 00:26:46,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:26:46] 2025-11-23 00:26:46,317 | INFO     | traces error code: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:46,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:26:46] 2025-11-23 00:26:46,403 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:26:46] 2025-11-23 00:26:46,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:26:46] 2025-11-23 00:26:46,411 [wrapper] pilotpid: 2070
[2025-11-22 19:26:46] 2025-11-23 00:26:46,415 [wrapper] Pilot exit status: 0
[2025-11-22 19:26:46] 2025-11-23 00:26:46,429 [wrapper] pandaids: 6895325982 6895325982
[2025-11-22 19:26:46] 2025-11-23 00:26:46,467 [wrapper] cleanup supervisor_pilot 20323 2075
[2025-11-22 19:26:46] 2025-11-23 00:26:46,472 [wrapper] Test setup, not cleaning
[2025-11-22 19:26:46] 2025-11-23 00:26:46,475 [wrapper] apfmon messages muted
[2025-11-22 19:26:46] 2025-11-23 00:26:46,479 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:26:46] 2025-11-23 00:26:46,483 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:26:46]  *** Error codes and diagnostics ***
[2025-11-22 19:26:46]     "exeErrorCode": 0,
[2025-11-22 19:26:46]     "exeErrorDiag": "",
[2025-11-22 19:26:46]     "pilotErrorCode": 0,
[2025-11-22 19:26:46]     "pilotErrorDiag": "",
[2025-11-22 19:26:46]  *** Listing of results directory ***
[2025-11-22 19:26:46] total 1710712
[2025-11-22 19:26:46] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 19:26:46] -rwx------ 1 boincer umatlas     36292 Nov 21 10:23 runpilot2-wrapper.sh
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 10:23 queuedata.json
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 10:23 pilot3.tar.gz
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas       100 Nov 22 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:26:46] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 07:59 run_atlas
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas       105 Nov 22 07:59 job.xml
[2025-11-22 19:26:46] -rw-r--r-- 3 boincer umatlas 409260195 Nov 22 07:59 EVNT.47483658._001021.pool.root.1
[2025-11-22 19:26:46] -rw-r--r-- 3 boincer umatlas 409260195 Nov 22 07:59 ATLAS.root_0
[2025-11-22 19:26:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:59 start_atlas.sh
[2025-11-22 19:26:46] drwxrwx--x 2 boincer umatlas      4096 Nov 22 07:59 shared
[2025-11-22 19:26:46] -rw-r--r-- 2 boincer umatlas    590088 Nov 22 07:59 input.tar.gz
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas         0 Nov 22 07:59 boinc_lockfile
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas      2783 Nov 22 12:12 pandaJob.out
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas        57 Nov 22 12:12 setup.sh.local
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas    989768 Nov 22 12:12 agis_schedconf.cvmfs.json
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas       532 Nov 22 19:14 boinc_task_state.xml
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 19:19 init_data.xml
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas 917617374 Nov 22 19:25 HITS.47556149._000078.pool.root.1
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas      1061 Nov 22 19:25 memory_monitor_summary.json
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas   1526164 Nov 22 19:26 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas   2201417 Nov 22 19:26 log.47556149._000078.job.log.tgz.1
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas        96 Nov 22 19:26 pilot_heartbeat.json
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas      8673 Nov 22 19:26 heartbeat.json
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 19:26 boinc_mmap_file
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas        29 Nov 22 19:26 wrapper_checkpoint.txt
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas      4745 Nov 22 19:26 pilotlog.txt
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas   3651007 Nov 22 19:26 log.47556149._000078.job.log.1
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas       353 Nov 22 19:26 output.list
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas       620 Nov 22 19:26 runtime_log
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas   5867520 Nov 22 19:26 result.tar.gz
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas      9430 Nov 22 19:26 runtime_log.err
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas       795 Nov 22 19:26 r1GMDmw9hg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlVJKDmnegNim.diag
[2025-11-22 19:26:46] -rw-r--r-- 1 boincer umatlas     23220 Nov 22 19:26 stderr.txt
[2025-11-22 19:26:46] HITS file was successfully produced:
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas 917617374 Nov 22 19:25 shared/HITS.pool.root.1
[2025-11-22 19:26:46]  *** Contents of shared directory: ***
[2025-11-22 19:26:46] total 1302116
[2025-11-22 19:26:46] -rw-r--r-- 3 boincer umatlas 409260195 Nov 22 07:59 ATLAS.root_0
[2025-11-22 19:26:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:59 start_atlas.sh
[2025-11-22 19:26:46] -rw-r--r-- 2 boincer umatlas    590088 Nov 22 07:59 input.tar.gz
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas 917617374 Nov 22 19:25 HITS.pool.root.1
[2025-11-22 19:26:46] -rw------- 1 boincer umatlas   5867520 Nov 22 19:26 result.tar.gz
19:26:48 (30709): run_atlas exited; CPU time 289759.914145
19:26:48 (30709): called boinc_finish(0)

</stderr_txt>
]]>

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