Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:10 (2761875): wrapper (7.7.26015): starting
02:24:10 (2761875): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 02:24:10] Arguments: --nthreads 3
[2025-11-25 02:24:10] Threads: 3
[2025-11-25 02:24:10] Checking for CVMFS
[2025-11-25 02:24:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:24:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:24:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:24:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:24:10] 2.9.2.0 1559605 8976 91720 153265 2 81 36691063 36864001 0 130560 0 3297488 99.921 481650 7032 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 02:24:10] CVMFS is ok
[2025-11-25 02:24:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:24:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:24:10] Further information can be found at the LHC@home message board.
[2025-11-25 02:24:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:24:10] Checking for apptainer binary...
[2025-11-25 02:24:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:24:10] Running /usr/bin/apptainer --version
[2025-11-25 02:24:10] apptainer version 1.4.1-1.1
[2025-11-25 02:24:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:24:10] atlasA223
[2025-11-25 02:24:10] apptainer works
[2025-11-25 02:24:10] Set ATHENA_PROC_NUMBER=3
[2025-11-25 02:24:10] Set ATHENA_CORE_NUMBER=3
[2025-11-25 02:24:10] Starting ATLAS job with PandaID=6891570697
[2025-11-25 02:24:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:41:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:41:07] 2025-11-25 09:40:36,106 | INFO     | did not find any defunct processes belonging to 2772045
[2025-11-25 10:41:07] 2025-11-25 09:40:36,107 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:41:07] 2025-11-25 09:40:36,107 | INFO     | ready for new job
[2025-11-25 10:41:07] 2025-11-25 09:40:36,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:41:07] 2025-11-25 09:40:36,108 | INFO     | ***************************************
[2025-11-25 10:41:07] 2025-11-25 09:40:36,108 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:41:07] 2025-11-25 09:40:36,108 | INFO     | ***************************************
[2025-11-25 10:41:07] 2025-11-25 09:40:36,108 | INFO     | 
[2025-11-25 10:41:07] 2025-11-25 09:40:36,109 | INFO     | architecture information:
[2025-11-25 10:41:07] 2025-11-25 09:40:36,109 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:41:07] 2025-11-25 09:40:36,118 | INFO     | cat /etc/os-release:
[2025-11-25 10:41:07] NAME="CentOS Linux"
[2025-11-25 10:41:07] VERSION="7 (Core)"
[2025-11-25 10:41:07] ID="centos"
[2025-11-25 10:41:07] ID_LIKE="rhel fedora"
[2025-11-25 10:41:07] VERSION_ID="7"
[2025-11-25 10:41:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:41:07] ANSI_COLOR="0;31"
[2025-11-25 10:41:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:41:07] HOME_URL="https://www.centos.org/"
[2025-11-25 10:41:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:41:07] 
[2025-11-25 10:41:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:41:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:41:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:41:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:41:07] 
[2025-11-25 10:41:07] 2025-11-25 09:40:36,118 | INFO     | ***************************************
[2025-11-25 10:41:07] 2025-11-25 09:40:36,621 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | INFO     | sufficient remaining disk space (365123600384 B)
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | INFO     | update_server=False
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:41:07] 2025-11-25 09:40:36,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:41:07] 2025-11-25 09:40:36,648 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 10:41:07] 2025-11-25 09:40:36,648 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 10:41:07] 2025-11-25 09:40:36,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:41:07] 2025-11-25 09:40:36,649 | INFO     | will abort loop
[2025-11-25 10:41:07] 2025-11-25 09:40:36,692 | INFO     | all payload control threads have been joined
[2025-11-25 10:41:07] 2025-11-25 09:40:37,163 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:41:07] 2025-11-25 09:40:37,188 | INFO     | all data control threads have been joined
[2025-11-25 10:41:07] 2025-11-25 09:40:37,635 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,639 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,654 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,697 | INFO     | [payload] control thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,748 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,790 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:37,851 | INFO     | all job control threads have been joined
[2025-11-25 10:41:07] 2025-11-25 09:40:37,859 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,194 | INFO     | [data] control thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,484 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,639 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,660 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,857 | INFO     | [job] control thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,953 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:38,990 | INFO     | [job] validate thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:41,170 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:47,252 | INFO     | job.realtimelogging is not enabled
[2025-11-25 10:41:07] 2025-11-25 09:40:48,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:41:07] 2025-11-25 09:40:50,405 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:41:07] 2025-11-25 09:40:51,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914026841920)>', '<ExcThread(monitor, started 139913190176512)>']
[2025-11-25 10:41:07] 2025-11-25 09:40:56,926 | INFO     | all workflow threads have been joined
[2025-11-25 10:41:07] 2025-11-25 09:40:56,926 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:41:07] 2025-11-25 09:40:56,926 | INFO     | traces error code: 0
[2025-11-25 10:41:07] 2025-11-25 09:40:56,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:41:07] 2025-11-25 09:41:07,735 | INFO     | PID=2765598 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 10:41:07] 2025-11-25 09:41:07,736 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:41:07] 2025-11-25 09:41:07,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:41:07] 2025-11-25 09:41:07,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:41:07] 2025-11-25 09:41:07,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:41:07] 2025-11-25 09:41:07,736 | INFO     | [monitor] control thread has ended
[2025-11-25 10:41:07] 2025-11-25 09:41:07,783 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:41:07] 2025-11-25 09:41:07,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:41:07] 2025-11-25 09:41:07,788 [wrapper] pilotpid: 2765598
[2025-11-25 10:41:07] 2025-11-25 09:41:07,790 [wrapper] Pilot exit status: 0
[2025-11-25 10:41:07] 2025-11-25 09:41:07,796 [wrapper] pandaids: 6891570697
[2025-11-25 10:41:07] 2025-11-25 09:41:07,813 [wrapper] cleanup supervisor_pilot 2825195 2765599
[2025-11-25 10:41:07] 2025-11-25 09:41:07,815 [wrapper] Test setup, not cleaning
[2025-11-25 10:41:07] 2025-11-25 09:41:07,818 [wrapper] apfmon messages muted
[2025-11-25 10:41:07] 2025-11-25 09:41:07,820 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:41:07] 2025-11-25 09:41:07,822 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:41:07]  *** Error codes and diagnostics ***
[2025-11-25 10:41:07]     "exeErrorCode": 0,
[2025-11-25 10:41:07]     "exeErrorDiag": "",
[2025-11-25 10:41:07]     "pilotErrorCode": 0,
[2025-11-25 10:41:07]     "pilotErrorDiag": "",
[2025-11-25 10:41:07]  *** Listing of results directory ***
[2025-11-25 10:41:07] total 1315592
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-25 10:41:07] -rwx------ 1 boinc boinc     36292 Nov 18 16:40 runpilot2-wrapper.sh
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc       100 Nov 25 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:41:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 02:24 run_atlas
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc       105 Nov 25 02:24 job.xml
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc 409305618 Nov 25 02:24 EVNT.47493065._000249.pool.root.1
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc    611270 Nov 25 02:24 input.tar.gz
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc     15120 Nov 25 02:24 start_atlas.sh
[2025-11-25 10:41:07] drwxrwx--x 2 boinc boinc      4096 Nov 25 02:24 shared
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:24 boinc_setup_complete
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc      6447 Nov 25 02:24 init_data.xml
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:24 boinc_lockfile
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc      2773 Nov 25 02:24 pandaJob.out
[2025-11-25 10:41:07] -rw------- 1 boinc boinc    991801 Nov 25 02:24 agis_schedconf.cvmfs.json
[2025-11-25 10:41:07] drwx------ 7 boinc boinc      4096 Nov 25 02:24 pilot3
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc       531 Nov 25 10:37 boinc_task_state.xml
[2025-11-25 10:41:07] -rw------- 1 boinc boinc 923177465 Nov 25 10:40 HITS.47493068._002489.pool.root.1
[2025-11-25 10:41:07] -rw------- 1 boinc boinc      1040 Nov 25 10:40 memory_monitor_summary.json
[2025-11-25 10:41:07] -rw------- 1 boinc boinc   1516240 Nov 25 10:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:41:07] -rw------- 1 boinc boinc   1175054 Nov 25 10:40 log.47493068._002489.job.log.tgz.1
[2025-11-25 10:41:07] -rw------- 1 boinc boinc      8584 Nov 25 10:40 heartbeat.json
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc      8192 Nov 25 10:40 boinc_mmap_file
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc        28 Nov 25 10:40 wrapper_checkpoint.txt
[2025-11-25 10:41:07] -rw------- 1 boinc boinc       747 Nov 25 10:41 pilotlog.txt
[2025-11-25 10:41:07] -rw------- 1 boinc boinc        95 Nov 25 10:41 pilot_heartbeat.json
[2025-11-25 10:41:07] -rw------- 1 boinc boinc   4194861 Nov 25 10:41 log.47493068._002489.job.log.1
[2025-11-25 10:41:07] -rw------- 1 boinc boinc       353 Nov 25 10:41 output.list
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc       620 Nov 25 10:41 runtime_log
[2025-11-25 10:41:07] -rw------- 1 boinc boinc   5386240 Nov 25 10:41 result.tar.gz
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc      8793 Nov 25 10:41 runtime_log.err
[2025-11-25 10:41:07] -rw------- 1 boinc boinc       668 Nov 25 10:41 hEpKDmkzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJOFKDmXCl80n.diag
[2025-11-25 10:41:07] -rw-r--r-- 1 boinc boinc     10191 Nov 25 10:41 stderr.txt
[2025-11-25 10:41:07] HITS file was successfully produced:
[2025-11-25 10:41:07] -rw------- 1 boinc boinc 923177465 Nov 25 10:40 shared/HITS.pool.root.1
[2025-11-25 10:41:07]  *** Contents of shared directory: ***
[2025-11-25 10:41:07] total 1307140
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc 409305618 Nov 25 02:24 ATLAS.root_0
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc    611270 Nov 25 02:24 input.tar.gz
[2025-11-25 10:41:07] -rw-r--r-- 2 boinc boinc     15120 Nov 25 02:24 start_atlas.sh
[2025-11-25 10:41:07] -rw------- 1 boinc boinc 923177465 Nov 25 10:40 HITS.pool.root.1
[2025-11-25 10:41:07] -rw------- 1 boinc boinc   5386240 Nov 25 10:41 result.tar.gz
10:41:09 (2761875): run_atlas exited; CPU time 88043.655153
10:41:09 (2761875): called boinc_finish(0)

</stderr_txt>
]]>

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