Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:35:38 (9390): wrapper (7.7.26015): starting
07:35:38 (9390): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 07:35:38] Arguments: --nthreads 12
[2025-11-22 07:35:38] Threads: 12
[2025-11-22 07:35:38] Checking for CVMFS
[2025-11-22 07:35:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:35:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:35:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:35:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:35:38] 2.11.2.0 2979 281943 92900 153172 1 81 20011984 20275201 1 130560 1 126216114 99.974 15838751 13757 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:35:38] CVMFS is ok
[2025-11-22 07:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:35:38] Further information can be found at the LHC@home message board.
[2025-11-22 07:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:35:38] Checking for apptainer binary...
[2025-11-22 07:35:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:35:38] Running /usr/bin/apptainer --version
[2025-11-22 07:35:38] apptainer version 1.3.2-1.el7
[2025-11-22 07:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:35:40] c-205-21.aglt2.org
[2025-11-22 07:35:40] apptainer works
[2025-11-22 07:35:40] Set ATHENA_PROC_NUMBER=12
[2025-11-22 07:35:40] Set ATHENA_CORE_NUMBER=12
[2025-11-22 07:35:40] Starting ATLAS job with PandaID=6895326357
[2025-11-22 07:35:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:49:43]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:49:43] 2025-11-22 19:48:31,959 | INFO     | time since job start (25956s) is within the limit (172800.0s)
[2025-11-22 14:49:43] 2025-11-22 19:48:33,141 | INFO     | monitor loop #1943: job 0:6895326357 is in state 'finished'
[2025-11-22 14:49:43] 2025-11-22 19:48:33,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:49:43] 2025-11-22 19:48:33,964 | INFO     | time since job start (25958s) is within the limit (172800.0s)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,426 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 14:49:43] 2025-11-22 19:48:35,430 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-22 14:49:43] 2025-11-22 19:48:35,432 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895326357/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,433 | INFO     | extracted standard info from prmon json
[2025-11-22 14:49:43] 2025-11-22 19:48:35,433 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:49:43] 2025-11-22 19:48:35,433 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:49:43] 2025-11-22 19:48:35,440 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:49:43] 2025-11-22 19:48:35,441 | INFO     | sum of square deviations: 23803452280.649483
[2025-11-22 14:49:43] 2025-11-22 19:48:35,444 | INFO     | sum of deviations: 362588194821.66833
[2025-11-22 14:49:43] 2025-11-22 19:48:35,445 | INFO     | mean x: 1763827916.2188234
[2025-11-22 14:49:43] 2025-11-22 19:48:35,445 | INFO     | mean y: 3439224.6164705884
[2025-11-22 14:49:43] 2025-11-22 19:48:35,445 | INFO     | intersect: -26864225708.07698
[2025-11-22 14:49:43] 2025-11-22 19:48:35,445 | INFO     | chi2: 5.372232463947318
[2025-11-22 14:49:43] 2025-11-22 19:48:35,446 | INFO     | sum of square deviations: 22973195310.407215
[2025-11-22 14:49:43] 2025-11-22 19:48:35,450 | INFO     | sum of deviations: 514083566109.94946
[2025-11-22 14:49:43] 2025-11-22 19:48:35,450 | INFO     | mean x: 1763827763.7214286
[2025-11-22 14:49:43] 2025-11-22 19:48:35,450 | INFO     | mean y: 3467022.0166666666
[2025-11-22 14:49:43] 2025-11-22 19:48:35,450 | INFO     | intersect: -39466656943.145256
[2025-11-22 14:49:43] 2025-11-22 19:48:35,451 | INFO     | chi2: 2.736003372883647
[2025-11-22 14:49:43] 2025-11-22 19:48:35,451 | INFO     | current chi2=2.736003372883647 (change=49.07138901295175 %)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,451 | INFO     | sum of square deviations: 22162473590.158936
[2025-11-22 14:49:43] 2025-11-22 19:48:35,455 | INFO     | sum of deviations: 556470914722.7809
[2025-11-22 14:49:43] 2025-11-22 19:48:35,455 | INFO     | mean x: 1763827611.2240963
[2025-11-22 14:49:43] 2025-11-22 19:48:35,455 | INFO     | mean y: 3474959.281927711
[2025-11-22 14:49:43] 2025-11-22 19:48:35,455 | INFO     | intersect: -44283944503.99521
[2025-11-22 14:49:43] 2025-11-22 19:48:35,456 | INFO     | chi2: 2.350038438564796
[2025-11-22 14:49:43] 2025-11-22 19:48:35,456 | INFO     | current chi2=2.350038438564796 (change=14.106888103433072 %)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,456 | INFO     | right removable region: 414
[2025-11-22 14:49:43] 2025-11-22 19:48:35,457 | INFO     | sum of square deviations: 22973138580.407177
[2025-11-22 14:49:43] 2025-11-22 19:48:35,460 | INFO     | sum of deviations: 230629063352.52872
[2025-11-22 14:49:43] 2025-11-22 19:48:35,460 | INFO     | mean x: 1763828068.7214286
[2025-11-22 14:49:43] 2025-11-22 19:48:35,461 | INFO     | mean y: 3463374.919047619
[2025-11-22 14:49:43] 2025-11-22 19:48:35,461 | INFO     | intersect: -17703739059.799942
[2025-11-22 14:49:43] 2025-11-22 19:48:35,461 | INFO     | chi2: 3.1673140027280247
[2025-11-22 14:49:43] 2025-11-22 19:48:35,461 | INFO     | current chi2=3.1673140027280247 (change=41.04287139501779 %)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,462 | INFO     | sum of square deviations: 22162411003.045837
[2025-11-22 14:49:43] 2025-11-22 19:48:35,466 | INFO     | sum of deviations: 197065981367.21707
[2025-11-22 14:49:43] 2025-11-22 19:48:35,466 | INFO     | mean x: 1763828221.2192771
[2025-11-22 14:49:43] 2025-11-22 19:48:35,466 | INFO     | mean y: 3469680.7228915663
[2025-11-22 14:49:43] 2025-11-22 19:48:35,466 | INFO     | intersect: -15680317580.960842
[2025-11-22 14:49:43] 2025-11-22 19:48:35,466 | INFO     | chi2: 3.1064116966343214
[2025-11-22 14:49:43] 2025-11-22 19:48:35,467 | INFO     | current chi2=3.1064116966343214 (change=1.9228376485958703 %)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,467 | INFO     | left removable region: 20
[2025-11-22 14:49:43] 2025-11-22 19:48:35,467 | INFO     | sum of square deviations: 18965392918.396156
[2025-11-22 14:49:43] 2025-11-22 19:48:35,470 | INFO     | sum of deviations: 350062161979.0306
[2025-11-22 14:49:43] 2025-11-22 19:48:35,471 | INFO     | mean x: 1763828190.7258883
[2025-11-22 14:49:43] 2025-11-22 19:48:35,471 | INFO     | mean y: 3515336.5558375632
[2025-11-22 14:49:43] 2025-11-22 19:48:35,471 | INFO     | intersect: -32553126777.942577
[2025-11-22 14:49:43] 2025-11-22 19:48:35,471 | INFO     | chi2: 0.03714174251374272
[2025-11-22 14:49:43] 2025-11-22 19:48:35,471 | INFO     | current memory leak: 18.46 B/s (using 394 data points, chi2=0.04)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | could have reported an average CPU frequency of 2403 MHz (18 samples)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | ..............................
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | . Timing measurements:
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | . get job = 0 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | . initial setup = 2 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,472 | INFO     | . payload setup = 7 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,473 | INFO     | . stage-in = 0 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,473 | INFO     | . payload execution = 25922 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,473 | INFO     | . stage-out = 3 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,473 | INFO     | . log creation = 0 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,473 | INFO     | ..............................
[2025-11-22 14:49:43] 2025-11-22 19:48:35,833 | INFO     | 
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | job summary report
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | --------------------------------------------------
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | PanDA job id: 6895326357
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | task id: 47556149
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | errors: (none)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,834 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | pilot state: finished 
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | transexitcode: 0
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | exeerrorcode: 0
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | exeerrordiag: 
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | exitcode: 0
[2025-11-22 14:49:43] 2025-11-22 19:48:35,835 | INFO     | exitmsg: OK
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | cpuconsumptiontime: 297482 s
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | nevents: 1000
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | neventsw: 0
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | pid: 19503
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | pgrp: 19503
[2025-11-22 14:49:43] 2025-11-22 19:48:35,836 | INFO     | corecount: 12
[2025-11-22 14:49:43] 2025-11-22 19:48:35,837 | INFO     | event service: False
[2025-11-22 14:49:43] 2025-11-22 19:48:35,837 | INFO     | sizes: {0: 2298575, 1: 2298830, 6: 2299092, 12: 2299120, 25934: 2336412, 25935: 2336411, 25938: 2345589, 25940: 2345645, 25945: 2345891}
[2025-11-22 14:49:43] 2025-11-22 19:48:35,837 | INFO     | --------------------------------------------------
[2025-11-22 14:49:43] 2025-11-22 19:48:35,837 | INFO     | 
[2025-11-22 14:49:43] 2025-11-22 19:48:35,837 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 14:49:43] 2025-11-22 19:48:35,861 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,861 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,861 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,864 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:49:43] 2025-11-22 19:48:35,865 | INFO     | job 6895326357 has completed (purged errors)
[2025-11-22 14:49:43] 2025-11-22 19:48:35,865 | INFO     | overall cleanup function is called
[2025-11-22 14:49:43] 2025-11-22 19:48:36,882 | INFO     | --- collectZombieJob: --- 10, [19503]
[2025-11-22 14:49:43] 2025-11-22 19:48:36,882 | INFO     | zombie collector waiting for pid 19503
[2025-11-22 14:49:43] 2025-11-22 19:48:36,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:49:43] 2025-11-22 19:48:36,883 | INFO     | collected zombie processes
[2025-11-22 14:49:43] 2025-11-22 19:48:36,883 | INFO     | will attempt to kill all subprocesses of pid=19503
[2025-11-22 14:49:43] 2025-11-22 19:48:36,976 | INFO     | process IDs to be killed: [19503] (in reverse order)
[2025-11-22 14:49:43] 2025-11-22 19:48:37,028 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:49:43] 2025-11-22 19:48:37,029 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:49:43] 2025-11-22 19:48:37,032 | INFO     | did not find any defunct processes belonging to 19503
[2025-11-22 14:49:43] 2025-11-22 19:48:37,035 | INFO     | did not find any defunct processes belonging to 19503
[2025-11-22 14:49:43] 2025-11-22 19:48:37,037 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:49:43] 2025-11-22 19:48:37,038 | INFO     | ready for new job
[2025-11-22 14:49:43] 2025-11-22 19:48:37,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:49:43] 2025-11-22 19:48:37,041 | INFO     | ***************************************
[2025-11-22 14:49:43] 2025-11-22 19:48:37,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:49:43] 2025-11-22 19:48:37,041 | INFO     | ***************************************
[2025-11-22 14:49:43] 2025-11-22 19:48:37,041 | INFO     | 
[2025-11-22 14:49:43] 2025-11-22 19:48:37,042 | INFO     | architecture information:
[2025-11-22 14:49:43] 2025-11-22 19:48:37,042 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:49:43] 2025-11-22 19:48:37,057 | INFO     | cat /etc/os-release:
[2025-11-22 14:49:43] NAME="CentOS Linux"
[2025-11-22 14:49:43] VERSION="7 (Core)"
[2025-11-22 14:49:43] ID="centos"
[2025-11-22 14:49:43] ID_LIKE="rhel fedora"
[2025-11-22 14:49:43] VERSION_ID="7"
[2025-11-22 14:49:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:49:43] ANSI_COLOR="0;31"
[2025-11-22 14:49:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:49:43] HOME_URL="https://www.centos.org/"
[2025-11-22 14:49:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:49:43] 
[2025-11-22 14:49:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:49:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:49:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:49:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:49:43] 
[2025-11-22 14:49:43] 2025-11-22 19:48:37,057 | INFO     | ***************************************
[2025-11-22 14:49:43] 2025-11-22 19:48:37,560 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 14:49:43] 2025-11-22 19:48:37,576 | INFO     | sufficient remaining disk space (28241297408 B)
[2025-11-22 14:49:43] 2025-11-22 19:48:37,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:49:43] 2025-11-22 19:48:37,576 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:49:43] 2025-11-22 19:48:37,577 | INFO     | update_server=False
[2025-11-22 14:49:43] 2025-11-22 19:48:37,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:49:43] 2025-11-22 19:48:37,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:49:43] 2025-11-22 19:48:37,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:49:43] 2025-11-22 19:48:37,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:49:43] 2025-11-22 19:48:37,578 | INFO     | aborting loop
[2025-11-22 14:49:43] 2025-11-22 19:48:37,615 | INFO     | all data control threads have been joined
[2025-11-22 14:49:43] 2025-11-22 19:48:38,581 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,582 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,620 | INFO     | [data] control thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,621 | INFO     | all payload control threads have been joined
[2025-11-22 14:49:43] 2025-11-22 19:48:38,734 | INFO     | [job] validate thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,764 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,777 | INFO     | all job control threads have been joined
[2025-11-22 14:49:43] 2025-11-22 19:48:38,787 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:38,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,214 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,290 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,391 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,438 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,583 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,626 | INFO     | [payload] control thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:39,782 | INFO     | [job] control thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:40,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:49:43] 2025-11-22 19:48:41,569 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:48:41,580 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:49:43] 2025-11-22 19:49:07,155 | INFO     | PID=13076 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 14:49:43] 2025-11-22 19:49:07,155 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:49:43] 2025-11-22 19:49:07,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:49:43] 2025-11-22 19:49:07,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:49:43] 2025-11-22 19:49:37,064 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:49:43] 2025-11-22 19:49:38,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800573073216)>', '<ExcThread(monitor, started 139799776196352)>']
[2025-11-22 14:49:43] 2025-11-22 19:49:38,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:49:43] 2025-11-22 19:49:38,299 | INFO     | [monitor] control thread has ended
[2025-11-22 14:49:43] 2025-11-22 19:49:43,147 | INFO     | all workflow threads have been joined
[2025-11-22 14:49:43] 2025-11-22 19:49:43,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:49:43] 2025-11-22 19:49:43,147 | INFO     | traces error code: 0
[2025-11-22 14:49:43] 2025-11-22 19:49:43,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:49:43] 2025-11-22 19:49:43,245 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:49:43] 2025-11-22 19:49:43,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:49:43] 2025-11-22 19:49:43,253 [wrapper] pilotpid: 13076
[2025-11-22 14:49:43] 2025-11-22 19:49:43,257 [wrapper] Pilot exit status: 0
[2025-11-22 14:49:43] 2025-11-22 19:49:43,272 [wrapper] pandaids: 6895326357
[2025-11-22 14:49:43] 2025-11-22 19:49:43,317 [wrapper] cleanup supervisor_pilot  9672 13077
[2025-11-22 14:49:43] 2025-11-22 19:49:43,321 [wrapper] Test setup, not cleaning
[2025-11-22 14:49:43] 2025-11-22 19:49:43,325 [wrapper] apfmon messages muted
[2025-11-22 14:49:43] 2025-11-22 19:49:43,329 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:49:43] 2025-11-22 19:49:43,333 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:49:43]  *** Error codes and diagnostics ***
[2025-11-22 14:49:43]     "exeErrorCode": 0,
[2025-11-22 14:49:43]     "exeErrorDiag": "",
[2025-11-22 14:49:43]     "pilotErrorCode": 0,
[2025-11-22 14:49:43]     "pilotErrorDiag": "",
[2025-11-22 14:49:43]  *** Listing of results directory ***
[2025-11-22 14:49:43] total 1313432
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 10:23 pilot3.tar.gz
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 10:27 queuedata.json
[2025-11-22 14:49:43] -rwx------ 1 boincer umatlas     36292 Nov 21 10:28 runpilot2-wrapper.sh
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas       100 Nov 22 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:49:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 07:35 run_atlas
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas       105 Nov 22 07:35 job.xml
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas 410466273 Nov 22 07:35 EVNT.47483658._001022.pool.root.1
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:35 start_atlas.sh
[2025-11-22 14:49:43] drwxrwx--x 2 boincer umatlas      4096 Nov 22 07:35 shared
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 07:35 input.tar.gz
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas         0 Nov 22 07:35 boinc_lockfile
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas      2783 Nov 22 07:35 pandaJob.out
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas        57 Nov 22 07:35 setup.sh.local
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas    989768 Nov 22 07:35 agis_schedconf.cvmfs.json
[2025-11-22 14:49:43] drwx------ 5 boincer umatlas      4096 Nov 22 07:35 pilot3
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas       533 Nov 22 14:37 boinc_task_state.xml
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas 918926818 Nov 22 14:47 HITS.47556149._000083.pool.root.1
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas      1064 Nov 22 14:48 memory_monitor_summary.json
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 14:48 init_data.xml
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas   1526164 Nov 22 14:48 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas   2189594 Nov 22 14:48 log.47556149._000083.job.log.tgz.1
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas      8662 Nov 22 14:48 heartbeat.json
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas        95 Nov 22 14:49 pilot_heartbeat.json
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas        29 Nov 22 14:49 wrapper_checkpoint.txt
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 14:49 boinc_mmap_file
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas      4746 Nov 22 14:49 pilotlog.txt
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas   3632006 Nov 22 14:49 log.47556149._000083.job.log.1
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas       353 Nov 22 14:49 output.list
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas       620 Nov 22 14:49 runtime_log
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas   5836800 Nov 22 14:49 result.tar.gz
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas       670 Nov 22 14:49 WkOODmuEig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpVJKDmrofiAo.diag
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 14:49 runtime_log.err
[2025-11-22 14:49:43] -rw-r--r-- 1 boincer umatlas     21348 Nov 22 14:49 stderr.txt
[2025-11-22 14:49:43] HITS file was successfully produced:
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas 918926818 Nov 22 14:47 shared/HITS.pool.root.1
[2025-11-22 14:49:43]  *** Contents of shared directory: ***
[2025-11-22 14:49:43] total 1304540
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas 410466273 Nov 22 07:35 ATLAS.root_0
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:35 start_atlas.sh
[2025-11-22 14:49:43] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 07:35 input.tar.gz
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas 918926818 Nov 22 14:47 HITS.pool.root.1
[2025-11-22 14:49:43] -rw------- 1 boincer umatlas   5836800 Nov 22 14:49 result.tar.gz
14:49:44 (9390): run_atlas exited; CPU time 290836.685110
14:49:44 (9390): called boinc_finish(0)

</stderr_txt>
]]>

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