Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:40:52 (15936): wrapper (7.7.26015): starting
07:40:52 (15936): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 07:40:52] Arguments: --nthreads 12
[2025-11-22 07:40:52] Threads: 12
[2025-11-22 07:40:52] Checking for CVMFS
[2025-11-22 07:40:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:40:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:40:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:40:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:40:52] 2.11.2.0 723 111881 88884 153172 3 81 10816435 20275200 1 130560 0 47996800 99.911 6173692 32944 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:40:52] CVMFS is ok
[2025-11-22 07:40:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:40:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:40:52] Further information can be found at the LHC@home message board.
[2025-11-22 07:40:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:40:52] Checking for apptainer binary...
[2025-11-22 07:40:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:40:52] Running /usr/bin/apptainer --version
[2025-11-22 07:40:52] apptainer version 1.3.2-1.el7
[2025-11-22 07:40:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:40:53] c-205-1.aglt2.org
[2025-11-22 07:40:53] apptainer works
[2025-11-22 07:40:53] Set ATHENA_PROC_NUMBER=12
[2025-11-22 07:40:53] Set ATHENA_CORE_NUMBER=12
[2025-11-22 07:40:53] Starting ATLAS job with PandaID=6894274102
[2025-11-22 07:40:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:44:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:44:56] 2025-11-22 19:44:15,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,367 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 14:44:56] 2025-11-22 19:44:15,371 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-22 14:44:56] 2025-11-22 19:44:15,373 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894274102/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,374 | INFO     | extracted standard info from prmon json
[2025-11-22 14:44:56] 2025-11-22 19:44:15,374 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:44:56] 2025-11-22 19:44:15,375 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:44:56] 2025-11-22 19:44:15,382 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:44:56] 2025-11-22 19:44:15,382 | INFO     | sum of square deviations: 22323312183.836422
[2025-11-22 14:44:56] 2025-11-22 19:44:15,386 | INFO     | sum of deviations: 317295479091.88007
[2025-11-22 14:44:56] 2025-11-22 19:44:15,386 | INFO     | mean x: 1763827955.8028846
[2025-11-22 14:44:56] 2025-11-22 19:44:15,386 | INFO     | mean y: 3420792.266826923
[2025-11-22 14:44:56] 2025-11-22 19:44:15,386 | INFO     | intersect: -25066991325.042328
[2025-11-22 14:44:56] 2025-11-22 19:44:15,387 | INFO     | chi2: 6.456487992072299
[2025-11-22 14:44:56] 2025-11-22 19:44:15,387 | INFO     | sum of square deviations: 21528061283.3723
[2025-11-22 14:44:56] 2025-11-22 19:44:15,391 | INFO     | sum of deviations: 484718790945.59125
[2025-11-22 14:44:56] 2025-11-22 19:44:15,391 | INFO     | mean x: 1763827803.3065693
[2025-11-22 14:44:56] 2025-11-22 19:44:15,391 | INFO     | mean y: 3452881.114355231
[2025-11-22 14:44:56] 2025-11-22 19:44:15,391 | INFO     | intersect: -39710317393.0035
[2025-11-22 14:44:56] 2025-11-22 19:44:15,392 | INFO     | chi2: 3.154987810616874
[2025-11-22 14:44:56] 2025-11-22 19:44:15,392 | INFO     | current chi2=3.154987810616874 (change=51.13461351603572 %)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,392 | INFO     | sum of square deviations: 20751927020.396557
[2025-11-22 14:44:56] 2025-11-22 19:44:15,396 | INFO     | sum of deviations: 532616303354.5173
[2025-11-22 14:44:56] 2025-11-22 19:44:15,396 | INFO     | mean x: 1763827650.810345
[2025-11-22 14:44:56] 2025-11-22 19:44:15,396 | INFO     | mean y: 3462227.4482758623
[2025-11-22 14:44:56] 2025-11-22 19:44:15,396 | INFO     | intersect: -45266712547.44047
[2025-11-22 14:44:56] 2025-11-22 19:44:15,397 | INFO     | chi2: 2.550274209825109
[2025-11-22 14:44:56] 2025-11-22 19:44:15,397 | INFO     | current chi2=2.550274209825109 (change=19.166907674154498 %)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,397 | INFO     | right removable region: 405
[2025-11-22 14:44:56] 2025-11-22 19:44:15,397 | INFO     | sum of square deviations: 21527984423.372288
[2025-11-22 14:44:56] 2025-11-22 19:44:15,401 | INFO     | sum of deviations: 176637050346.7666
[2025-11-22 14:44:56] 2025-11-22 19:44:15,401 | INFO     | mean x: 1763828108.3065693
[2025-11-22 14:44:56] 2025-11-22 19:44:15,401 | INFO     | mean y: 3447684.8272506082
[2025-11-22 14:44:56] 2025-11-22 19:44:15,402 | INFO     | intersect: -14468756876.587288
[2025-11-22 14:44:56] 2025-11-22 19:44:15,402 | INFO     | chi2: 4.056396095762735
[2025-11-22 14:44:56] 2025-11-22 19:44:15,402 | INFO     | current chi2=4.056396095762735 (change=37.17333477978361 %)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,403 | INFO     | sum of square deviations: 20751798615.014824
[2025-11-22 14:44:56] 2025-11-22 19:44:15,406 | INFO     | sum of deviations: 145902984092.53683
[2025-11-22 14:44:56] 2025-11-22 19:44:15,406 | INFO     | mean x: 1763828260.8078818
[2025-11-22 14:44:56] 2025-11-22 19:44:15,406 | INFO     | mean y: 3453717.0197044336
[2025-11-22 14:44:56] 2025-11-22 19:44:15,407 | INFO     | intersect: -12397775277.77292
[2025-11-22 14:44:56] 2025-11-22 19:44:15,407 | INFO     | chi2: 4.004480017429126
[2025-11-22 14:44:56] 2025-11-22 19:44:15,407 | INFO     | current chi2=4.004480017429126 (change=1.2798572207442998 %)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,407 | INFO     | left removable region: 20
[2025-11-22 14:44:56] 2025-11-22 19:44:15,408 | INFO     | sum of square deviations: 17695530952.218105
[2025-11-22 14:44:56] 2025-11-22 19:44:15,411 | INFO     | sum of deviations: 322259073299.4911
[2025-11-22 14:44:56] 2025-11-22 19:44:15,411 | INFO     | mean x: 1763828230.3090909
[2025-11-22 14:44:56] 2025-11-22 19:44:15,411 | INFO     | mean y: 3504236.5168831167
[2025-11-22 14:44:56] 2025-11-22 19:44:15,411 | INFO     | intersect: -32118145715.311195
[2025-11-22 14:44:56] 2025-11-22 19:44:15,412 | INFO     | chi2: 0.03450480034923436
[2025-11-22 14:44:56] 2025-11-22 19:44:15,412 | INFO     | current memory leak: 18.21 B/s (using 385 data points, chi2=0.03)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,412 | INFO     | could have reported an average CPU frequency of 2358 MHz (18 samples)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | ..............................
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . Timing measurements:
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . get job = 0 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . initial setup = 2 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . payload setup = 7 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . stage-in = 0 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . payload execution = 25347 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . stage-out = 3 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | . log creation = 0 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,413 | INFO     | ..............................
[2025-11-22 14:44:56] 2025-11-22 19:44:15,496 | INFO     | 
[2025-11-22 14:44:56] 2025-11-22 19:44:15,496 | INFO     | job summary report
[2025-11-22 14:44:56] 2025-11-22 19:44:15,496 | INFO     | --------------------------------------------------
[2025-11-22 14:44:56] 2025-11-22 19:44:15,496 | INFO     | PanDA job id: 6894274102
[2025-11-22 14:44:56] 2025-11-22 19:44:15,496 | INFO     | task id: 47533967
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | errors: (none)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | pilot state: finished 
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | transexitcode: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | exeerrorcode: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | exeerrordiag: 
[2025-11-22 14:44:56] 2025-11-22 19:44:15,497 | INFO     | exitcode: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | exitmsg: OK
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | cpuconsumptiontime: 289992 s
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | nevents: 1000
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | neventsw: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | pid: 26034
[2025-11-22 14:44:56] 2025-11-22 19:44:15,498 | INFO     | pgrp: 26034
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | corecount: 12
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | event service: False
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 11: 2299125, 25359: 2336221, 25363: 2345215, 25366: 2345399, 25371: 2345645}
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | --------------------------------------------------
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | 
[2025-11-22 14:44:56] 2025-11-22 19:44:15,499 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 14:44:56] 2025-11-22 19:44:15,524 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,525 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,525 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,525 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,526 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,527 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:44:56] 2025-11-22 19:44:15,528 | INFO     | job 6894274102 has completed (purged errors)
[2025-11-22 14:44:56] 2025-11-22 19:44:15,528 | INFO     | overall cleanup function is called
[2025-11-22 14:44:56] 2025-11-22 19:44:16,542 | INFO     | --- collectZombieJob: --- 10, [26034]
[2025-11-22 14:44:56] 2025-11-22 19:44:16,543 | INFO     | zombie collector waiting for pid 26034
[2025-11-22 14:44:56] 2025-11-22 19:44:16,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:44:56] 2025-11-22 19:44:16,543 | INFO     | collected zombie processes
[2025-11-22 14:44:56] 2025-11-22 19:44:16,543 | INFO     | will attempt to kill all subprocesses of pid=26034
[2025-11-22 14:44:56] 2025-11-22 19:44:16,635 | INFO     | process IDs to be killed: [26034] (in reverse order)
[2025-11-22 14:44:56] 2025-11-22 19:44:16,690 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:44:56] 2025-11-22 19:44:16,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:44:56] 2025-11-22 19:44:16,694 | INFO     | did not find any defunct processes belonging to 26034
[2025-11-22 14:44:56] 2025-11-22 19:44:16,697 | INFO     | did not find any defunct processes belonging to 26034
[2025-11-22 14:44:56] 2025-11-22 19:44:16,699 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:44:56] 2025-11-22 19:44:16,699 | INFO     | ready for new job
[2025-11-22 14:44:56] 2025-11-22 19:44:16,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:44:56] 2025-11-22 19:44:16,702 | INFO     | ***************************************
[2025-11-22 14:44:56] 2025-11-22 19:44:16,702 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:44:56] 2025-11-22 19:44:16,702 | INFO     | ***************************************
[2025-11-22 14:44:56] 2025-11-22 19:44:16,702 | INFO     | 
[2025-11-22 14:44:56] 2025-11-22 19:44:16,703 | INFO     | architecture information:
[2025-11-22 14:44:56] 2025-11-22 19:44:16,703 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:44:56] 2025-11-22 19:44:16,720 | INFO     | cat /etc/os-release:
[2025-11-22 14:44:56] NAME="CentOS Linux"
[2025-11-22 14:44:56] VERSION="7 (Core)"
[2025-11-22 14:44:56] ID="centos"
[2025-11-22 14:44:56] ID_LIKE="rhel fedora"
[2025-11-22 14:44:56] VERSION_ID="7"
[2025-11-22 14:44:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:44:56] ANSI_COLOR="0;31"
[2025-11-22 14:44:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:44:56] HOME_URL="https://www.centos.org/"
[2025-11-22 14:44:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:44:56] 
[2025-11-22 14:44:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:44:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:44:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:44:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:44:56] 
[2025-11-22 14:44:56] 2025-11-22 19:44:16,720 | INFO     | ***************************************
[2025-11-22 14:44:56] 2025-11-22 19:44:17,223 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 14:44:56] 2025-11-22 19:44:17,241 | INFO     | sufficient remaining disk space (28392292352 B)
[2025-11-22 14:44:56] 2025-11-22 19:44:17,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:44:56] 2025-11-22 19:44:17,242 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:44:56] 2025-11-22 19:44:17,242 | INFO     | update_server=False
[2025-11-22 14:44:56] 2025-11-22 19:44:17,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:44:56] 2025-11-22 19:44:17,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:44:56] 2025-11-22 19:44:17,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:44:56] 2025-11-22 19:44:17,354 | INFO     | all job control threads have been joined
[2025-11-22 14:44:56] 2025-11-22 19:44:17,579 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:44:56] 2025-11-22 19:44:17,579 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:44:56] 2025-11-22 19:44:17,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:44:56] 2025-11-22 19:44:17,579 | INFO     | will abort loop
[2025-11-22 14:44:56] 2025-11-22 19:44:17,722 | INFO     | all data control threads have been joined
[2025-11-22 14:44:56] 2025-11-22 19:44:18,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:44:56] 2025-11-22 19:44:18,244 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,248 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,294 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,359 | INFO     | [job] control thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,585 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,648 | INFO     | all payload control threads have been joined
[2025-11-22 14:44:56] 2025-11-22 19:44:18,672 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,728 | INFO     | [data] control thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:18,980 | INFO     | [job] validate thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:19,021 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:19,246 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:19,289 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:19,599 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:19,654 | INFO     | [payload] control thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:20,195 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:21,248 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:27,789 | INFO     | job.realtimelogging is not enabled
[2025-11-22 14:44:56] 2025-11-22 19:44:28,795 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:44:56] 2025-11-22 19:44:47,413 | INFO     | PID=19667 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 14:44:56] 2025-11-22 19:44:47,413 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:44:56] 2025-11-22 19:44:47,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:44:56] 2025-11-22 19:44:47,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:44:56] 2025-11-22 19:44:49,633 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:44:56] 2025-11-22 19:44:50,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649450903360)>', '<ExcThread(monitor, started 140648418105088)>']
[2025-11-22 14:44:56] 2025-11-22 19:44:51,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:44:56] 2025-11-22 19:44:51,434 | INFO     | [monitor] control thread has ended
[2025-11-22 14:44:56] 2025-11-22 19:44:55,917 | INFO     | all workflow threads have been joined
[2025-11-22 14:44:56] 2025-11-22 19:44:55,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:44:56] 2025-11-22 19:44:55,917 | INFO     | traces error code: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:55,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:44:56] 2025-11-22 19:44:56,002 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:44:56] 2025-11-22 19:44:56,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:44:56] 2025-11-22 19:44:56,010 [wrapper] pilotpid: 19667
[2025-11-22 14:44:56] 2025-11-22 19:44:56,014 [wrapper] Pilot exit status: 0
[2025-11-22 14:44:56] 2025-11-22 19:44:56,028 [wrapper] pandaids: 6894274102
[2025-11-22 14:44:56] 2025-11-22 19:44:56,075 [wrapper] cleanup supervisor_pilot 23700 19668
[2025-11-22 14:44:56] 2025-11-22 19:44:56,079 [wrapper] Test setup, not cleaning
[2025-11-22 14:44:56] 2025-11-22 19:44:56,082 [wrapper] apfmon messages muted
[2025-11-22 14:44:56] 2025-11-22 19:44:56,086 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:44:56] 2025-11-22 19:44:56,090 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:44:56]  *** Error codes and diagnostics ***
[2025-11-22 14:44:56]     "exeErrorCode": 0,
[2025-11-22 14:44:56]     "exeErrorDiag": "",
[2025-11-22 14:44:56]     "pilotErrorCode": 0,
[2025-11-22 14:44:56]     "pilotErrorDiag": "",
[2025-11-22 14:44:56]  *** Listing of results directory ***
[2025-11-22 14:44:56] total 1294708
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-22 14:44:56] -rwx------ 1 boincer umatlas     36292 Nov 21 02:23 runpilot2-wrapper.sh
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 02:23 queuedata.json
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas       100 Nov 22 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:44:56] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 07:40 run_atlas
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas       105 Nov 22 07:40 job.xml
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas 408831677 Nov 22 07:40 EVNT.47493127._002299.pool.root.1
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:40 start_atlas.sh
[2025-11-22 14:44:56] drwxrwx--x 2 boincer umatlas      4096 Nov 22 07:40 shared
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 07:40 input.tar.gz
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas         0 Nov 22 07:40 boinc_lockfile
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 07:40 pandaJob.out
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas        57 Nov 22 07:40 setup.sh.local
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas    989768 Nov 22 07:41 agis_schedconf.cvmfs.json
[2025-11-22 14:44:56] drwx------ 5 boincer umatlas      4096 Nov 22 07:41 pilot3
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas       532 Nov 22 14:35 boinc_task_state.xml
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas      5955 Nov 22 14:39 init_data.xml
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas 901555840 Nov 22 14:43 HITS.47533967._002705.pool.root.1
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas      1076 Nov 22 14:44 memory_monitor_summary.json
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas   1526164 Nov 22 14:44 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas   2178411 Nov 22 14:44 log.47533967._002705.job.log.tgz.1
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas        95 Nov 22 14:44 pilot_heartbeat.json
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas      8663 Nov 22 14:44 heartbeat.json
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 14:44 boinc_mmap_file
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas        29 Nov 22 14:44 wrapper_checkpoint.txt
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas      5004 Nov 22 14:44 pilotlog.txt
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas   3555613 Nov 22 14:44 log.47533967._002705.job.log.1
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas       353 Nov 22 14:44 output.list
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas       620 Nov 22 14:44 runtime_log
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas   5754880 Nov 22 14:44 result.tar.gz
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas       669 Nov 22 14:44 tBINDmEfag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpBJKDm83YAzm.diag
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas      9340 Nov 22 14:44 runtime_log.err
[2025-11-22 14:44:56] -rw-r--r-- 1 boincer umatlas     21283 Nov 22 14:44 stderr.txt
[2025-11-22 14:44:56] HITS file was successfully produced:
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas 901555840 Nov 22 14:43 shared/HITS.pool.root.1
[2025-11-22 14:44:56]  *** Contents of shared directory: ***
[2025-11-22 14:44:56] total 1285900
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas 408831677 Nov 22 07:40 ATLAS.root_0
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:40 start_atlas.sh
[2025-11-22 14:44:56] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 07:40 input.tar.gz
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas 901555840 Nov 22 14:43 HITS.pool.root.1
[2025-11-22 14:44:56] -rw------- 1 boincer umatlas   5754880 Nov 22 14:44 result.tar.gz
14:44:57 (15936): run_atlas exited; CPU time 283353.942822
14:44:57 (15936): called boinc_finish(0)

</stderr_txt>
]]>

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