Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:29:06 (12415): wrapper (7.7.26015): starting
06:29:06 (12415): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 06:29:06] Arguments: --nthreads 8
[2025-11-25 06:29:06] Threads: 8
[2025-11-25 06:29:06] Checking for CVMFS
[2025-11-25 06:29:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:29:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:29:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:29:09] 2.11.2.0 23125 170316 135856 153272 1 84 20737692 25165825 4632 130560 10 56929323 99.893 27246114 2006 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 06:29:09] CVMFS is ok
[2025-11-25 06:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:29:09] Checking for apptainer binary...
[2025-11-25 06:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:29:09] Running /usr/bin/apptainer --version
[2025-11-25 06:29:09] apptainer version 1.3.2-1.el7
[2025-11-25 06:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:29:21] cg-vwn409.simple-grid.lan
[2025-11-25 06:29:21] apptainer works
[2025-11-25 06:29:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 06:29:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 06:29:21] Starting ATLAS job with PandaID=6894278628
[2025-11-25 06:29:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:35:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:36:00] 2025-11-26 06:34:34,450 | INFO     | monitor loop #6045: job 0:6894278628 is in state 'finished'
[2025-11-26 07:36:00] 2025-11-26 06:34:34,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:36:00] 2025-11-26 06:34:35,258 | INFO     | time since job start (90082s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:36,963 | INFO     | monitor loop #6046: job 0:6894278628 is in state 'finished'
[2025-11-26 07:36:00] 2025-11-26 06:34:36,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:36:00] 2025-11-26 06:34:37,265 | INFO     | time since job start (90084s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:39,272 | INFO     | time since job start (90086s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:39,475 | INFO     | monitor loop #6047: job 0:6894278628 is in state 'finished'
[2025-11-26 07:36:00] 2025-11-26 06:34:39,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:36:00] 2025-11-26 06:34:41,279 | INFO     | time since job start (90088s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:41,981 | INFO     | monitor loop #6048: job 0:6894278628 is in state 'finished'
[2025-11-26 07:36:00] 2025-11-26 06:34:41,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:36:00] 2025-11-26 06:34:43,288 | INFO     | time since job start (90090s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:44,492 | INFO     | monitor loop #6049: job 0:6894278628 is in state 'finished'
[2025-11-26 07:36:00] 2025-11-26 06:34:44,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:36:00] 2025-11-26 06:34:45,296 | INFO     | time since job start (90092s) is within the limit (172800.0s)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,066 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:36:00] 2025-11-26 06:34:46,067 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 07:36:00] 2025-11-26 06:34:46,069 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6894278628/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,070 | INFO     | extracted standard info from prmon json
[2025-11-26 07:36:00] 2025-11-26 06:34:46,070 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:36:00] 2025-11-26 06:34:46,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:36:00] 2025-11-26 06:34:46,105 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:36:00] 2025-11-26 06:34:46,107 | INFO     | sum of square deviations: 978965600586.7865
[2025-11-26 07:36:00] 2025-11-26 06:34:46,181 | INFO     | sum of deviations: 3239500571641.8413
[2025-11-26 07:36:00] 2025-11-26 06:34:46,181 | INFO     | mean x: 1764094050.2665303
[2025-11-26 07:36:00] 2025-11-26 06:34:46,181 | INFO     | mean y: 2837437.522154056
[2025-11-26 07:36:00] 2025-11-26 06:34:46,181 | INFO     | intersect: -5834736100.141464
[2025-11-26 07:36:00] 2025-11-26 06:34:46,183 | INFO     | chi2: 23.69457801333473
[2025-11-26 07:36:00] 2025-11-26 06:34:46,185 | INFO     | sum of square deviations: 968990343016.2386
[2025-11-26 07:36:00] 2025-11-26 06:34:46,289 | INFO     | sum of deviations: 3719209043181.9883
[2025-11-26 07:36:00] 2025-11-26 06:34:46,289 | INFO     | mean x: 1764093897.7708619
[2025-11-26 07:36:00] 2025-11-26 06:34:46,289 | INFO     | mean y: 2844770.2298221616
[2025-11-26 07:36:00] 2025-11-26 06:34:46,289 | INFO     | intersect: -6768155606.501073
[2025-11-26 07:36:00] 2025-11-26 06:34:46,291 | INFO     | chi2: 20.539099649143065
[2025-11-26 07:36:00] 2025-11-26 06:34:46,291 | INFO     | current chi2=20.539099649143065 (change=13.317301377622506 %)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,291 | INFO     | right removable region: 1461
[2025-11-26 07:36:00] 2025-11-26 06:34:46,294 | INFO     | sum of square deviations: 968989209636.239
[2025-11-26 07:36:00] 2025-11-26 06:34:46,375 | INFO     | sum of deviations: 2622695629750.216
[2025-11-26 07:36:00] 2025-11-26 06:34:46,375 | INFO     | mean x: 1764094202.7708619
[2025-11-26 07:36:00] 2025-11-26 06:34:46,375 | INFO     | mean y: 2846865.812585499
[2025-11-26 07:36:00] 2025-11-26 06:34:46,376 | INFO     | intersect: -4771904091.230268
[2025-11-26 07:36:00] 2025-11-26 06:34:46,377 | INFO     | chi2: 18.965216574786414
[2025-11-26 07:36:00] 2025-11-26 06:34:46,378 | INFO     | current chi2=18.965216574786414 (change=19.959677846496138 %)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,378 | INFO     | left removable region: 10
[2025-11-26 07:36:00] 2025-11-26 06:34:46,380 | INFO     | sum of square deviations: 947281546640.8383
[2025-11-26 07:36:00] 2025-11-26 06:34:46,462 | INFO     | sum of deviations: 2715462693113.7275
[2025-11-26 07:36:00] 2025-11-26 06:34:46,462 | INFO     | mean x: 1764094172.2804961
[2025-11-26 07:36:00] 2025-11-26 06:34:46,462 | INFO     | mean y: 2863521.322536182
[2025-11-26 07:36:00] 2025-11-26 06:34:46,462 | INFO     | intersect: -5054061665.232673
[2025-11-26 07:36:00] 2025-11-26 06:34:46,464 | INFO     | chi2: 12.107720865495157
[2025-11-26 07:36:00] 2025-11-26 06:34:46,464 | INFO     | current memory leak: 2.87 B/s (using 1451 data points, chi2=12.11)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | ..............................
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . Timing measurements:
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . get job = 0 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . initial setup = 10 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . payload setup = 159 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . stage-in = 0 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . payload execution = 89618 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,466 | INFO     | . stage-out = 4 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,467 | INFO     | . log creation = 0 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,467 | INFO     | ..............................
[2025-11-26 07:36:00] 2025-11-26 06:34:46,812 | INFO     | 
[2025-11-26 07:36:00] 2025-11-26 06:34:46,812 | INFO     | job summary report
[2025-11-26 07:36:00] 2025-11-26 06:34:46,812 | INFO     | --------------------------------------------------
[2025-11-26 07:36:00] 2025-11-26 06:34:46,812 | INFO     | PanDA job id: 6894278628
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | task id: 47533967
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | errors: (none)
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | pilot state: finished 
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | transexitcode: 0
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | exeerrorcode: 0
[2025-11-26 07:36:00] 2025-11-26 06:34:46,813 | INFO     | exeerrordiag: 
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | exitcode: 0
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | exitmsg: OK
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | cpuconsumptiontime: 335651 s
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | nevents: 1000
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | neventsw: 0
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | pid: 22790
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | pgrp: 22790
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | corecount: 8
[2025-11-26 07:36:00] 2025-11-26 06:34:46,814 | INFO     | event service: False
[2025-11-26 07:36:00] 2025-11-26 06:34:46,815 | INFO     | sizes: {0: 2284082, 1: 2284337, 2: 2284337, 12: 2284365, 23: 2284393, 34: 2284421, 45: 2284577, 55: 2284605, 66: 2284633, 77: 2284661, 88: 2284717, 98: 2285025, 10
[2025-11-26 07:36:00] 2025-11-26 06:34:46,815 | INFO     | --------------------------------------------------
[2025-11-26 07:36:00] 2025-11-26 06:34:46,815 | INFO     | 
[2025-11-26 07:36:00] 2025-11-26 06:34:46,815 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-26 07:36:00] 2025-11-26 06:34:47,108 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:36:00] 2025-11-26 06:34:47,110 | INFO     | job 6894278628 has completed (purged errors)
[2025-11-26 07:36:00] 2025-11-26 06:34:47,111 | INFO     | overall cleanup function is called
[2025-11-26 07:36:00] 2025-11-26 06:34:48,128 | INFO     | --- collectZombieJob: --- 10, [22790]
[2025-11-26 07:36:00] 2025-11-26 06:34:48,128 | INFO     | zombie collector waiting for pid 22790
[2025-11-26 07:36:00] 2025-11-26 06:34:48,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:36:00] 2025-11-26 06:34:48,128 | INFO     | collected zombie processes
[2025-11-26 07:36:00] 2025-11-26 06:34:48,129 | INFO     | will attempt to kill all subprocesses of pid=22790
[2025-11-26 07:36:00] 2025-11-26 06:34:48,283 | INFO     | process IDs to be killed: [22790] (in reverse order)
[2025-11-26 07:36:00] 2025-11-26 06:34:49,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:36:00] 2025-11-26 06:34:49,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:36:00] 2025-11-26 06:34:49,134 | INFO     | did not find any defunct processes belonging to 22790
[2025-11-26 07:36:00] 2025-11-26 06:34:49,136 | INFO     | did not find any defunct processes belonging to 22790
[2025-11-26 07:36:00] 2025-11-26 06:34:49,178 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:36:00] 2025-11-26 06:34:49,178 | INFO     | ready for new job
[2025-11-26 07:36:00] 2025-11-26 06:34:49,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:36:00] 2025-11-26 06:34:49,184 | INFO     | ***************************************
[2025-11-26 07:36:00] 2025-11-26 06:34:49,184 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:36:00] 2025-11-26 06:34:49,185 | INFO     | ***************************************
[2025-11-26 07:36:00] 2025-11-26 06:34:49,185 | INFO     | 
[2025-11-26 07:36:00] 2025-11-26 06:34:49,185 | INFO     | pilot is running in a VM
[2025-11-26 07:36:00] 2025-11-26 06:34:49,185 | INFO     | architecture information:
[2025-11-26 07:36:00] 2025-11-26 06:34:49,195 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:36:00] 2025-11-26 06:34:49,431 | INFO     | cat /etc/os-release:
[2025-11-26 07:36:00] NAME="CentOS Linux"
[2025-11-26 07:36:00] VERSION="7 (Core)"
[2025-11-26 07:36:00] ID="centos"
[2025-11-26 07:36:00] ID_LIKE="rhel fedora"
[2025-11-26 07:36:00] VERSION_ID="7"
[2025-11-26 07:36:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:36:00] ANSI_COLOR="0;31"
[2025-11-26 07:36:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:36:00] HOME_URL="https://www.centos.org/"
[2025-11-26 07:36:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:36:00] 
[2025-11-26 07:36:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:36:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:36:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:36:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:36:00] 
[2025-11-26 07:36:00] 2025-11-26 06:34:49,432 | INFO     | ***************************************
[2025-11-26 07:36:00] 2025-11-26 06:34:49,935 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-26 07:36:00] 2025-11-26 06:34:50,130 | INFO     | sufficient remaining disk space (495874736128 B)
[2025-11-26 07:36:00] 2025-11-26 06:34:50,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:36:00] 2025-11-26 06:34:50,131 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:36:00] 2025-11-26 06:34:50,131 | INFO     | update_server=False
[2025-11-26 07:36:00] 2025-11-26 06:34:50,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:36:00] 2025-11-26 06:34:50,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:36:00] 2025-11-26 06:34:50,162 | INFO     | all data control threads have been joined
[2025-11-26 07:36:00] 2025-11-26 06:34:50,291 | INFO     | all payload control threads have been joined
[2025-11-26 07:36:00] 2025-11-26 06:34:50,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:36:00] 2025-11-26 06:34:50,519 | INFO     | aborting loop
[2025-11-26 07:36:00] 2025-11-26 06:34:50,593 | INFO     | all job control threads have been joined
[2025-11-26 07:36:00] 2025-11-26 06:34:51,137 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,167 | INFO     | [data] control thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:36:00] 2025-11-26 06:34:51,297 | INFO     | [payload] control thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,322 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,336 | INFO     | [job] validate thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,525 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,599 | INFO     | [job] control thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,656 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:36:00] 2025-11-26 06:34:51,772 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:51,950 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:52,064 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:52,165 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:52,564 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:52,566 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:52,662 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:53,272 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:34:54,141 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:36:00] 2025-11-26 06:35:18,505 | INFO     | PID=16187 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 07:36:00] 2025-11-26 06:35:18,505 | INFO     | .. there are 9 such processes running
[2025-11-26 07:36:00] 2025-11-26 06:35:18,505 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:36:00] 2025-11-26 06:35:18,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:36:00] 2025-11-26 06:35:18,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:36:00] 2025-11-26 06:35:49,892 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:36:00] 2025-11-26 06:35:50,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623394854720)>', '<ExcThread(monitor, started 140622639908608)>']
[2025-11-26 07:36:00] 2025-11-26 06:35:50,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:36:00] 2025-11-26 06:35:50,697 | INFO     | [monitor] control thread has ended
[2025-11-26 07:36:00] 2025-11-26 06:35:55,545 | INFO     | all workflow threads have been joined
[2025-11-26 07:36:00] 2025-11-26 06:35:55,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:36:00] 2025-11-26 06:35:55,545 | INFO     | traces error code: 0
[2025-11-26 07:36:00] 2025-11-26 06:35:55,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:36:00] 2025-11-26 06:35:55,699 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:36:00] 2025-11-26 06:35:55,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:36:00] 2025-11-26 06:35:55,715 [wrapper] pilotpid: 16187
[2025-11-26 07:36:00] 2025-11-26 06:35:55,842 [wrapper] Pilot exit status: 0
[2025-11-26 07:36:00] 2025-11-26 06:35:56,302 [wrapper] pandaids: 6894278628
[2025-11-26 07:36:00] 2025-11-26 06:35:57,317 [wrapper] cleanup supervisor_pilot 26557 16188
[2025-11-26 07:36:00] 2025-11-26 06:35:57,397 [wrapper] Test setup, not cleaning
[2025-11-26 07:36:00] 2025-11-26 06:35:57,496 [wrapper] apfmon messages muted
[2025-11-26 07:36:00] 2025-11-26 06:35:57,615 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:36:00] 2025-11-26 06:35:57,682 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:36:00]  *** Error codes and diagnostics ***
[2025-11-26 07:36:00]     "exeErrorCode": 0,
[2025-11-26 07:36:00]     "exeErrorDiag": "",
[2025-11-26 07:36:00]     "pilotErrorCode": 0,
[2025-11-26 07:36:00]     "pilotErrorDiag": "",
[2025-11-26 07:36:00]  *** Listing of results directory ***
[2025-11-26 07:36:00] total 1319628
[2025-11-26 07:36:00] -rwx------. 1 boinc boinc     36292 Nov 21 09:19 runpilot2-wrapper.sh
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc      5112 Nov 21 09:19 queuedata.json
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc    576529 Nov 21 09:19 pilot3.tar.gz
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc       100 Nov 25 06:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:36:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 06:29 run_atlas
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc       105 Nov 25 06:29 job.xml
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc 408652949 Nov 25 06:29 EVNT.47493127._002323.pool.root.1
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc      6393 Nov 25 06:29 init_data.xml
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc     15847 Nov 25 06:29 start_atlas.sh
[2025-11-26 07:36:00] drwxrwx--x. 2 boinc boinc        68 Nov 25 06:29 shared
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc    590090 Nov 25 06:29 input.tar.gz
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc         0 Nov 25 06:29 boinc_lockfile
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc      2785 Nov 25 06:29 pandaJob.out
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc    991801 Nov 25 06:33 agis_schedconf.cvmfs.json
[2025-11-26 07:36:00] drwx------. 5 boinc boinc      4096 Nov 25 06:33 pilot3
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc       533 Nov 26 07:08 boinc_task_state.xml
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc 909719773 Nov 26 07:31 HITS.47533967._002948.pool.root.1
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc      1031 Nov 26 07:33 memory_monitor_summary.json
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc   1516240 Nov 26 07:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc   2538936 Nov 26 07:33 log.47533967._002948.job.log.tgz.1
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc        95 Nov 26 07:34 pilot_heartbeat.json
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc      8637 Nov 26 07:34 heartbeat.json
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc        29 Nov 26 07:35 wrapper_checkpoint.txt
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc      8192 Nov 26 07:35 boinc_mmap_file
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc      4884 Nov 26 07:35 pilotlog.txt
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc  11972722 Nov 26 07:35 log.47533967._002948.job.log.1
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc       353 Nov 26 07:35 output.list
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc       620 Nov 26 07:35 runtime_log
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc  14530560 Nov 26 07:35 result.tar.gz
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc       662 Nov 26 07:35 XBMMDmEYbg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKDJKDmAYJV3n.diag
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc      8817 Nov 26 07:35 runtime_log.err
[2025-11-26 07:36:00] -rw-r--r--. 1 boinc boinc     21384 Nov 26 07:36 stderr.txt
[2025-11-26 07:36:00] HITS file was successfully produced:
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc 909719773 Nov 26 07:31 shared/HITS.pool.root.1
[2025-11-26 07:36:00]  *** Contents of shared directory: ***
[2025-11-26 07:36:00] total 1302264
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc 408652949 Nov 25 06:29 ATLAS.root_0
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc     15847 Nov 25 06:29 start_atlas.sh
[2025-11-26 07:36:00] -rw-r--r--. 2 boinc boinc    590090 Nov 25 06:29 input.tar.gz
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc 909719773 Nov 26 07:31 HITS.pool.root.1
[2025-11-26 07:36:00] -rw-------. 1 boinc boinc  14530560 Nov 26 07:35 result.tar.gz
07:36:01 (12415): run_atlas exited; CPU time 336220.913178
07:36:01 (12415): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN