Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:53:00 (2036696): wrapper (7.7.26015): starting
04:53:00 (2036696): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 04:53:00] Arguments: --nthreads 12
[2025-11-22 04:53:00] Threads: 12
[2025-11-22 04:53:00] Checking for CVMFS
[2025-11-22 04:53:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:53:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:53:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:53:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:53:03] 2.11.5.0 2882695 22607 359164 153172 2 812 25470923 45568001 14233 130560 0 183961138 99.762 125641351 26371 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 04:53:03] CVMFS is ok
[2025-11-22 04:53:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:53:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:53:03] Further information can be found at the LHC@home message board.
[2025-11-22 04:53:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:53:03] Checking for apptainer binary...
[2025-11-22 04:53:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 04:53:03] Running /usr/bin/apptainer --version
[2025-11-22 04:53:03] apptainer version 1.4.1-1.el9
[2025-11-22 04:53:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:53:04] wns0083.triumf.lcg
[2025-11-22 04:53:04] apptainer works
[2025-11-22 04:53:04] Set ATHENA_PROC_NUMBER=12
[2025-11-22 04:53:04] Set ATHENA_CORE_NUMBER=12
[2025-11-22 04:53:04] Starting ATLAS job with PandaID=6895333069
[2025-11-22 04:53:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:04:19]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:04:19] 2025-11-22 13:03:44,029 | WARNING  | wrong length of table data, x=[1763816197.0, 1763816258.0, 1763816319.0, 1763816380.0, 1763816441.0], y=[1889.0, 341458.0, 715434.0, 418289.0, 725875.0] (must be s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | could have reported an average CPU frequency of 2535 MHz (4 samples)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . Timing measurements:
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . get job = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . initial setup = 6 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload setup = 42 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-in = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload execution = 302 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-out = 1 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . log creation = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895333069/pilotlog.txt
[2025-11-22 05:04:19] 2025-11-22 13:03:44,040 | INFO     | time since job start (589s) is within the limit (172800.0s)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,061 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 05:04:19] - Log from pilotlog.txt -
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | INFO     | extracted standard info from prmon json
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:04:19] 2025-11-22 13:03:44,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 05:04:19] 2025-11-22 13:03:44,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 05:04:19] 2025-11-22 13:03:44,029 | WARNING  | wrong length of table data, x=[1763816197.0, 1763816258.0, 1763816319.0, 1763816380.0, 1763816441.0], y=[1889.0, 341458.0, 715434.0, 418289.0, 725875.0] (must be s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | could have reported an average CPU frequency of 2535 MHz (4 samples)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . Timing measurements:
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . get job = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . initial setup = 6 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload setup = 42 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-in = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload execution = 302 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-out = 1 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . log creation = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895333069/pilotlog.txt
[2025-11-22 05:04:19] 2025-11-22 13:03:44,040 | INFO     | time since job start (589s) is within the limit (172800.0s)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,062 | WARNING  | 
[2025-11-22 05:04:19] [begin log extracts]
[2025-11-22 05:04:19] - Log from pilotlog.txt -
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | INFO     | extracted standard info from prmon json
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:04:19] 2025-11-22 13:03:44,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:04:19] 2025-11-22 13:03:44,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 05:04:19] 2025-11-22 13:03:44,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 05:04:19] 2025-11-22 13:03:44,029 | WARNING  | wrong length of table data, x=[1763816197.0, 1763816258.0, 1763816319.0, 1763816380.0, 1763816441.0], y=[1889.0, 341458.0, 715434.0, 418289.0, 725875.0] (must be s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | could have reported an average CPU frequency of 2535 MHz (4 samples)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . Timing measurements:
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . get job = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . initial setup = 6 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload setup = 42 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-in = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . payload execution = 302 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . stage-out = 1 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | . log creation = 0 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | ..............................
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:04:19] 2025-11-22 13:03:44,030 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895333069/pilotlog.txt
[2025-11-22 05:04:19] 2025-11-22 13:03:44,040 | INFO     | time since job start (589s) is within the limit (172800.0s)
[2025-11-22 05:04:19] [end log extracts]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,062 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,062 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 05:04:19] 2025-11-22 13:03:44,156 | INFO     | 
[2025-11-22 05:04:19] 2025-11-22 13:03:44,156 | INFO     | job summary report
[2025-11-22 05:04:19] 2025-11-22 13:03:44,156 | INFO     | --------------------------------------------------
[2025-11-22 05:04:19] 2025-11-22 13:03:44,156 | INFO     | PanDA job id: 6895333069
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | task id: 47556149
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 05:00:57,846 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | pilot state: failed 
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | transexitcode: 65
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | exeerrorcode: 65
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | exitcode: 65
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | cpuconsumptiontime: 51 s
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | nevents: 0
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | neventsw: 0
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | pid: 2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | pgrp: 2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | corecount: 12
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | event service: False
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | sizes: {0: 2297976, 1: 2298658, 2: 2298658, 3: 2298885, 4: 2298885, 15: 2298913, 26: 2299069, 37: 2299097, 38: 2299387, 48: 2299415, 348: 2325203, 350: 2329493, 35
[2025-11-22 05:04:19] 2025-11-22 13:03:44,157 | INFO     | --------------------------------------------------
[2025-11-22 05:04:19] 2025-11-22 13:03:44,158 | INFO     | 
[2025-11-22 05:04:19] 2025-11-22 13:03:44,158 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 05:04:19] 2025-11-22 13:03:44,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | job 6895333069 has completed (purged errors)
[2025-11-22 05:04:19] 2025-11-22 13:03:44,219 | INFO     | overall cleanup function is called
[2025-11-22 05:04:19] 2025-11-22 13:03:45,233 | INFO     | --- collectZombieJob: --- 10, [2047263]
[2025-11-22 05:04:19] 2025-11-22 13:03:45,233 | INFO     | zombie collector waiting for pid 2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:45,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:04:19] 2025-11-22 13:03:45,234 | INFO     | collected zombie processes
[2025-11-22 05:04:19] 2025-11-22 13:03:45,234 | INFO     | will attempt to kill all subprocesses of pid=2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:46,158 | INFO     | process IDs to be killed: [2047263] (in reverse order)
[2025-11-22 05:04:19] 2025-11-22 13:03:46,500 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:04:19] 2025-11-22 13:03:46,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:04:19] 2025-11-22 13:03:46,528 | INFO     | did not find any defunct processes belonging to 2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:46,566 | INFO     | did not find any defunct processes belonging to 2047263
[2025-11-22 05:04:19] 2025-11-22 13:03:46,567 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:04:19] 2025-11-22 13:03:46,587 | INFO     | ready for new job
[2025-11-22 05:04:19] 2025-11-22 13:03:46,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:04:19] 2025-11-22 13:03:46,589 | INFO     | ***************************************
[2025-11-22 05:04:19] 2025-11-22 13:03:46,589 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:04:19] 2025-11-22 13:03:46,589 | INFO     | ***************************************
[2025-11-22 05:04:19] 2025-11-22 13:03:46,589 | INFO     | 
[2025-11-22 05:04:19] 2025-11-22 13:03:46,591 | INFO     | architecture information:
[2025-11-22 05:04:19] 2025-11-22 13:03:46,613 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:04:19] 2025-11-22 13:03:46,666 | INFO     | cat /etc/os-release:
[2025-11-22 05:04:19] NAME="CentOS Linux"
[2025-11-22 05:04:19] VERSION="7 (Core)"
[2025-11-22 05:04:19] ID="centos"
[2025-11-22 05:04:19] ID_LIKE="rhel fedora"
[2025-11-22 05:04:19] VERSION_ID="7"
[2025-11-22 05:04:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:04:19] ANSI_COLOR="0;31"
[2025-11-22 05:04:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:04:19] HOME_URL="https://www.centos.org/"
[2025-11-22 05:04:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:04:19] 
[2025-11-22 05:04:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:04:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:04:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:04:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:04:19] 
[2025-11-22 05:04:19] 2025-11-22 13:03:46,666 | INFO     | ***************************************
[2025-11-22 05:04:19] 2025-11-22 13:03:47,169 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 05:04:19] 2025-11-22 13:03:47,256 | INFO     | sufficient remaining disk space (1750617554944 B)
[2025-11-22 05:04:19] 2025-11-22 13:03:47,256 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:04:19] 2025-11-22 13:03:47,256 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:04:19] 2025-11-22 13:03:47,256 | INFO     | update_server=False
[2025-11-22 05:04:19] 2025-11-22 13:03:47,256 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:04:19] 2025-11-22 13:03:47,647 | INFO     | all payload control threads have been joined
[2025-11-22 05:04:19] 2025-11-22 13:03:47,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:04:19] 2025-11-22 13:03:47,711 | INFO     | all job control threads have been joined
[2025-11-22 05:04:19] 2025-11-22 13:03:47,913 | INFO     | all data control threads have been joined
[2025-11-22 05:04:19] 2025-11-22 13:03:48,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:04:19] 2025-11-22 13:03:48,236 | INFO     | aborting loop
[2025-11-22 05:04:19] 2025-11-22 13:03:48,262 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,570 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,657 | INFO     | [payload] control thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,717 | INFO     | [job] control thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,845 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,880 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,919 | INFO     | [data] control thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:48,957 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:04:19] 2025-11-22 13:03:49,242 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,257 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,295 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,385 | INFO     | [job] validate thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:49,718 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:50,176 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:50,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:04:19] 2025-11-22 13:03:54,725 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:04:19] 2025-11-22 13:03:55,692 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:04:19] 2025-11-22 13:03:56,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773855213376)>', '<ExcThread(monitor, started 139772714538752)>']
[2025-11-22 05:04:19] 2025-11-22 13:04:01,695 | INFO     | all workflow threads have been joined
[2025-11-22 05:04:19] 2025-11-22 13:04:01,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:04:19] 2025-11-22 13:04:01,696 | INFO     | traces error code: 0
[2025-11-22 05:04:19] 2025-11-22 13:04:01,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:04:19] 2025-11-22 13:04:17,339 | INFO     | PID=2040433 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 05:04:19] 2025-11-22 13:04:17,339 | INFO     | .. there are 21 such processes running
[2025-11-22 05:04:19] 2025-11-22 13:04:17,340 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:04:19] 2025-11-22 13:04:17,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:04:19] 2025-11-22 13:04:17,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:04:19] 2025-11-22 13:04:17,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:04:19] 2025-11-22 13:04:17,340 | INFO     | [monitor] control thread has ended
[2025-11-22 05:04:19] 2025-11-22 13:04:17,920 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:04:19] 2025-11-22 13:04:17,931 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:04:19] 2025-11-22 13:04:17,966 [wrapper] pilotpid: 2040433
[2025-11-22 05:04:19] 2025-11-22 13:04:17,996 [wrapper] Pilot exit status: 0
[2025-11-22 05:04:19] 2025-11-22 13:04:18,110 [wrapper] pandaids: 6895333069
[2025-11-22 05:04:19] 2025-11-22 13:04:18,503 [wrapper] cleanup supervisor_pilot 2040439 2040434
[2025-11-22 05:04:19] 2025-11-22 13:04:18,538 [wrapper] Test setup, not cleaning
[2025-11-22 05:04:19] 2025-11-22 13:04:18,563 [wrapper] apfmon messages muted
[2025-11-22 05:04:19] 2025-11-22 13:04:18,570 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:04:19] 2025-11-22 13:04:18,584 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:04:19]  *** Error codes and diagnostics ***
[2025-11-22 05:04:19]     "exeErrorCode": 65,
[2025-11-22 05:04:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 05:04:19]     "pilotErrorCode": 1305,
[2025-11-22 05:04:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 05:04:19]  *** Listing of results directory ***
[2025-11-22 05:04:19] total 405420
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc    576529 Nov 21 17:07 pilot3.tar.gz
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc      5112 Nov 21 17:25 queuedata.json
[2025-11-22 05:04:19] -rwx------. 1 boinc boinc     36292 Nov 21 17:25 runpilot2-wrapper.sh
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc       100 Nov 22 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:04:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 04:52 run_atlas
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc       105 Nov 22 04:52 job.xml
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc 410852173 Nov 22 04:53 EVNT.47483658._001053.pool.root.1
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc      6595 Nov 22 04:53 init_data.xml
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc     15847 Nov 22 04:53 start_atlas.sh
[2025-11-22 05:04:19] drwxrwx--x. 2 boinc boinc      4096 Nov 22 04:53 shared
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc    590095 Nov 22 04:53 input.tar.gz
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc         0 Nov 22 04:53 boinc_lockfile
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc      2784 Nov 22 04:53 pandaJob.out
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc    989768 Nov 22 04:53 agis_schedconf.cvmfs.json
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc   1526164 Nov 22 04:53 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:04:19] drwx------. 5 boinc boinc      4096 Nov 22 04:53 pilot3
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc       525 Nov 22 05:00 boinc_task_state.xml
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc       995 Nov 22 05:01 memory_monitor_summary.json
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc     53033 Nov 22 05:01 log.47556149._000392.job.log.tgz.1
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc     10340 Nov 22 05:03 heartbeat.json
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc        23 Nov 22 05:04 wrapper_checkpoint.txt
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc        95 Nov 22 05:04 pilot_heartbeat.json
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc       823 Nov 22 05:04 pilotlog.txt
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc    136750 Nov 22 05:04 log.47556149._000392.job.log.1
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc      8192 Nov 22 05:04 boinc_mmap_file
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc       186 Nov 22 05:04 output.list
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc       620 Nov 22 05:04 runtime_log
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc    215040 Nov 22 05:04 result.tar.gz
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc       645 Nov 22 05:04 sGlKDmzYrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmppJKDmsCE5Lo.diag
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc      8636 Nov 22 05:04 runtime_log.err
[2025-11-22 05:04:19] -rw-r--r--. 1 boinc boinc     22578 Nov 22 05:04 stderr.txt
[2025-11-22 05:04:19] No HITS result produced
[2025-11-22 05:04:19]  *** Contents of shared directory: ***
[2025-11-22 05:04:19] total 402036
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc 410852173 Nov 22 04:53 ATLAS.root_0
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc     15847 Nov 22 04:53 start_atlas.sh
[2025-11-22 05:04:19] -rw-r--r--. 2 boinc boinc    590095 Nov 22 04:53 input.tar.gz
[2025-11-22 05:04:19] -rw-------. 1 boinc boinc    215040 Nov 22 05:04 result.tar.gz
05:04:21 (2036696): run_atlas exited; CPU time 64.748952
05:04:21 (2036696): called boinc_finish(0)

</stderr_txt>
]]>

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