Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 23:53:22 (288844): vboxwrapper version 26210
2025-11-23 23:53:22 (288844): BOINC client version: 8.2.4
2025-11-23 23:53:22 (288844): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-23 23:53:22 (288844): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 23:53:22 (288844): Create VM. (boinc_d6855c56cc37bb54, slot#0)
2025-11-23 23:53:22 (288844): Setting Memory Size for VM. (4800MB)
2025-11-23 23:53:22 (288844): Setting CPU Count for VM. (8)
2025-11-23 23:53:22 (288844): Setting Chipset Options for VM.
2025-11-23 23:53:22 (288844): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 23:53:22 (288844): Setting Boot Options for VM.
2025-11-23 23:53:22 (288844): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 23:53:22 (288844): Enabling VM Network Access.
2025-11-23 23:53:22 (288844): Disabling USB Support for VM.
2025-11-23 23:53:23 (288844): Disabling COM Port Support for VM.
2025-11-23 23:53:23 (288844): Disabling LPT Port Support for VM.
2025-11-23 23:53:23 (288844): Disabling Audio Support for VM.
2025-11-23 23:53:23 (288844): Disabling Clipboard Support for VM.
2025-11-23 23:53:23 (288844): Disabling Drag and Drop Support for VM.
2025-11-23 23:53:23 (288844): Adding storage controller(s) to VM.
2025-11-23 23:53:23 (288844): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 23:53:23 (288844): Adding VirtualBox Guest Additions to VM.
2025-11-23 23:53:23 (288844): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 23:53:23 (288844): forwarding host port 38635 to guest port 80
2025-11-23 23:53:23 (288844): Enabling remote desktop for VM.
2025-11-23 23:53:23 (288844): Required extension pack not installed, remote desktop not enabled.
2025-11-23 23:53:23 (288844): Enabling shared directory for VM.
2025-11-23 23:53:23 (288844): Starting VM using VBoxManage interface. (boinc_d6855c56cc37bb54, slot#0)
2025-11-23 23:53:25 (288844): Successfully started VM. (PID = '289442')
2025-11-23 23:53:25 (288844): Reporting VM Process ID to BOINC.
2025-11-23 23:53:25 (288844): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-23 23:53:25 (288844): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 23:53:25 (288844): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 23:53:25 (288844): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 23:53:25 (288844): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 23:53:25 (288844): Detected: Web Application Enabled (http://localhost:38635)
2025-11-23 23:53:25 (288844): Preference change detected
2025-11-23 23:53:25 (288844): Setting CPU throttle for VM. (100%)
2025-11-23 23:53:25 (288844): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 23:53:27 (288844): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 23:53:27 (288844): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 23:53:30 (288844): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 23:53:30 (288844): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 23:53:30 (288844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 23:53:37 (288844): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 23:53:37 (288844): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 23:53:40 (288844): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000215 main     Log opened 2025-11-23T21:53:39.350048000Z
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000296 main     OS Product: Linux
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000315 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000336 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000351 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000351 main     Process ID: 1368
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000352 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 23:53:40 (288844): Guest Log: 00:00:00.000899 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 23:53:40 (288844): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 23:53:40 (288844): Guest Log: [INFO] Mounting shared directory
2025-11-23 23:53:41 (288844): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 23:53:43 (288844): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 23:53:43 (288844): Guest Log: [INFO] Detected branch: prod
2025-11-23 23:53:43 (288844): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 23:53:43 (288844): Guest Log: Copying input files
2025-11-23 23:53:44 (288844): Guest Log: Copied input files into RunAtlas.
2025-11-23 23:53:44 (288844): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 23:53:44 (288844): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 23:53:44 (288844): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 23:53:44 (288844): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 23:53:52 (288844): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 23:53:52 (288844): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 23:53:52 (288844): Guest Log: 2.6.3.0 1644 0 30180 153221 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 23:53:52 (288844): Guest Log: copied the webapp to /var/www
2025-11-23 23:53:52 (288844): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 23:53:52 (288844): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 23:53:52 (288844): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 23:53:53 (288844): Guest Log:  *** Starting ATLAS job. (PandaID=6894245883 taskID=47533967) ***
2025-11-24 01:32:25 (288844): Status Report: Elapsed Time: '6000.000000'
2025-11-24 01:32:25 (288844): Status Report: CPU Time: '44645.400000'
2025-11-24 03:11:26 (288844): Status Report: Elapsed Time: '12000.000000'
2025-11-24 03:11:26 (288844): Status Report: CPU Time: '92004.520000'
2025-11-24 04:50:27 (288844): Status Report: Elapsed Time: '18000.000000'
2025-11-24 04:50:27 (288844): Status Report: CPU Time: '139359.130000'
2025-11-24 06:29:28 (288844): Status Report: Elapsed Time: '24000.000000'
2025-11-24 06:29:28 (288844): Status Report: CPU Time: '186694.740000'
2025-11-24 08:08:28 (288844): Status Report: Elapsed Time: '30000.000000'
2025-11-24 08:08:28 (288844): Status Report: CPU Time: '234042.140000'
2025-11-24 09:47:29 (288844): Status Report: Elapsed Time: '36000.000000'
2025-11-24 09:47:29 (288844): Status Report: CPU Time: '281366.300000'
2025-11-24 11:26:30 (288844): Status Report: Elapsed Time: '42000.000000'
2025-11-24 11:26:30 (288844): Status Report: CPU Time: '328722.100000'
2025-11-24 11:42:40 (288844): Guest Log:  *** Job finished ***
2025-11-24 11:42:40 (288844): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:30,094 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:30,095 | INFO     | traces error code: 0
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:30,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,550 | INFO     | PID=6084 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | INFO     | found 0 job(s) in 20 queues
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | CRITICAL | thread 'MainThread' is not alive
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,551 | INFO     | [monitor] control thread has ended
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,655 [wrapper] ==== pilot stdout END ====
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,661 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,666 [wrapper] pilotpid: 6084
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,671 [wrapper] Pilot exit status: 0
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,689 [wrapper] pandaids: 6894245883
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,717 [wrapper] cleanup supervisor_pilot 27523 6085
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,723 [wrapper] Test setup, not cleaning
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,728 [wrapper] apfmon messages muted
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,734 [wrapper] ==== wrapper stdout END ====
2025-11-24 11:42:40 (288844): Guest Log: 2025-11-24 09:42:38,739 [wrapper] ==== wrapper stderr END ====
2025-11-24 11:42:40 (288844): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 11:42:40 (288844): Guest Log:     "exeErrorCode": 0,
2025-11-24 11:42:40 (288844): Guest Log:     "exeErrorDiag": "",
2025-11-24 11:42:40 (288844): Guest Log:     "pilotErrorCode": 0,
2025-11-24 11:42:40 (288844): Guest Log:     "pilotErrorDiag": "",
2025-11-24 11:42:40 (288844): Guest Log:  *** Listing of results directory ***
2025-11-24 11:42:40 (288844): Guest Log: total 913612
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 01:08 pilot3.tar.gz
2025-11-24 11:42:40 (288844): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 01:22 runpilot2-wrapper.sh
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 01:22 queuedata.json
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 23 21:53 start_atlas.sh
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas      6346 Nov 23 21:53 init_data.xml
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas    590096 Nov 23 21:53 input.tar.gz
2025-11-24 11:42:40 (288844): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 21:53 EVNT.47493127._002086.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 23 21:53 pandaJob.out
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 23 21:54 agis_schedconf.cvmfs.json
2025-11-24 11:42:40 (288844): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 21:54 pilot3
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas 916843584 Nov 24 09:41 HITS.47533967._000574.pool.root.1
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 24 09:41 memory_monitor_summary.json
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 24 09:41 agis_ddmendpoints.agis.ALL.json
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas   1942458 Nov 24 09:41 log.47533967._000574.job.log.tgz.1
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas      8645 Nov 24 09:42 heartbeat.json
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 09:42 pilot_heartbeat.json
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas       814 Nov 24 09:42 pilotlog.txt
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas   5483124 Nov 24 09:42 log.47533967._000574.job.log.1
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 09:42 output.list
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 09:42 runtime_log
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas   7444480 Nov 24 09:42 result.tar.gz
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 atlas atlas      8780 Nov 24 09:42 runtime_log.err
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas       672 Nov 24 09:42 dgtNDmB2Ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9nIKDmNA2cKo.diag
2025-11-24 11:42:40 (288844): Guest Log: Looking for outputfile HITS.47533967._000574.pool.root.1
2025-11-24 11:42:40 (288844): Guest Log: HITS file was successfully produced
2025-11-24 11:42:40 (288844): Guest Log: -rw-------. 1 atlas atlas 916843584 Nov 24 09:41 /home/atlas/RunAtlas/HITS.47533967._000574.pool.root.1
2025-11-24 11:42:40 (288844): Guest Log: Successfully finished the ATLAS job!
2025-11-24 11:42:40 (288844): Guest Log: Copying the results back to the shared directory!
2025-11-24 11:42:40 (288844): Guest Log:  *** Contents of shared directory: ***
2025-11-24 11:42:40 (288844): Guest Log: total 406312
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 root root 407992713 Nov 23 21:53 ATLAS.root_0
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 root root      6346 Nov 23 21:53 init_data.xml
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 root root    590096 Nov 23 21:53 input.tar.gz
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 root root   7444480 Nov 24  2025 result.tar.gz
2025-11-24 11:42:40 (288844): Guest Log: -rw-r--r--. 1 root root     15847 Nov 23 21:53 start_atlas.sh
2025-11-24 11:42:40 (288844): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 11:42:40 (288844): VM Completion File Detected.
2025-11-24 11:42:40 (288844): Powering off VM.
2025-11-24 11:42:41 (288844): Successfully stopped VM.
2025-11-24 11:42:41 (288844): Deregistering VM. (boinc_d6855c56cc37bb54, slot#0)
2025-11-24 11:42:41 (288844): Removing network bandwidth throttle group from VM.
2025-11-24 11:42:41 (288844): Removing VM from VirtualBox.
2025-11-24 11:42:46 (288844): called boinc_finish(0)

</stderr_txt>
]]>

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