Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:05 (1090055): wrapper (7.7.26015): starting
13:44:05 (1090055): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 13:44:05] Arguments: --nthreads 3
[2025-11-22 13:44:05] Threads: 3
[2025-11-22 13:44:05] Checking for CVMFS
[2025-11-22 13:44:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:44:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:44:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:44:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:44:06] 2.9.2.0 1027257 13 49576 153172 2 88 34681544 36864000 0 130560 0 187962 99.999 1293 4295 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 13:44:06] CVMFS is ok
[2025-11-22 13:44:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:44:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:44:06] Further information can be found at the LHC@home message board.
[2025-11-22 13:44:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:44:06] Checking for apptainer binary...
[2025-11-22 13:44:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:44:06] Running /usr/bin/apptainer --version
[2025-11-22 13:44:06] apptainer version 1.4.1-1.1
[2025-11-22 13:44:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:44:06] thA335
[2025-11-22 13:44:06] apptainer works
[2025-11-22 13:44:06] Set ATHENA_PROC_NUMBER=3
[2025-11-22 13:44:06] Set ATHENA_CORE_NUMBER=3
[2025-11-22 13:44:06] Starting ATLAS job with PandaID=6895325354
[2025-11-22 13:44:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:48:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:48:25] 2025-11-22 12:47:37,669 | INFO     | update_server=False
[2025-11-22 13:48:25] 2025-11-22 12:47:37,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:48:25] 2025-11-22 12:47:37,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:48:25] 2025-11-22 12:47:37,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:48:25] 2025-11-22 12:47:37,670 | INFO     | aborting loop
[2025-11-22 13:48:25] 2025-11-22 12:47:38,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:48:25] 2025-11-22 12:47:38,205 | INFO     | all job control threads have been joined
[2025-11-22 13:48:25] 2025-11-22 12:47:38,271 | INFO     | all data control threads have been joined
[2025-11-22 13:48:25] 2025-11-22 12:47:38,675 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:38,675 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:38,675 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:38,746 | INFO     | all payload control threads have been joined
[2025-11-22 13:48:25] 2025-11-22 12:47:39,157 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,211 | INFO     | [job] control thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,277 | INFO     | [data] control thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,564 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,588 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,695 | INFO     | [job] validate thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,752 | INFO     | [payload] control thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,775 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,832 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:39,872 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:40,067 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:40,170 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:47:40,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:48:25] 2025-11-22 12:47:44,342 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:48:25] 2025-11-22 12:48:07,335 | INFO     | PID=1093789 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 13:48:25] 2025-11-22 12:48:07,335 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:48:25] 2025-11-22 12:48:07,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:48:25] 2025-11-22 12:48:07,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:48:25] 2025-11-22 12:48:18,431 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:48:25] 2025-11-22 12:48:20,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422841616192)>', '<ExcThread(monitor, started 140422034728704)>']
[2025-11-22 13:48:25] 2025-11-22 12:48:20,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:48:25] 2025-11-22 12:48:20,405 | INFO     | [monitor] control thread has ended
[2025-11-22 13:48:25] 2025-11-22 12:48:25,229 | INFO     | all workflow threads have been joined
[2025-11-22 13:48:25] 2025-11-22 12:48:25,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:48:25] 2025-11-22 12:48:25,230 | INFO     | traces error code: 0
[2025-11-22 13:48:25] 2025-11-22 12:48:25,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:48:25] 2025-11-22 12:48:25,276 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:48:25] 2025-11-22 12:48:25,280 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:48:25] 2025-11-22 12:48:25,283 [wrapper] pilotpid: 1093789
[2025-11-22 13:48:25] 2025-11-22 12:48:25,286 [wrapper] Pilot exit status: 0
[2025-11-22 13:48:25] 2025-11-22 12:48:25,294 [wrapper] pandaids: 6895325354
[2025-11-22 13:48:25] 2025-11-22 12:48:25,311 [wrapper] cleanup supervisor_pilot 1093795 1093790
[2025-11-22 13:48:25] 2025-11-22 12:48:25,314 [wrapper] Test setup, not cleaning
[2025-11-22 13:48:25] 2025-11-22 12:48:25,317 [wrapper] apfmon messages muted
[2025-11-22 13:48:25] 2025-11-22 12:48:25,320 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:48:25] 2025-11-22 12:48:25,323 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:48:25]  *** Error codes and diagnostics ***
[2025-11-22 13:48:25]     "exeErrorCode": 65,
[2025-11-22 13:48:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 13:48:25]     "pilotErrorCode": 1305,
[2025-11-22 13:48:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 13:48:25]  *** Listing of results directory ***
[2025-11-22 13:48:25] total 404232
[2025-11-22 13:48:25] -rwx------ 1 boinc boinc     36292 Nov 21 15:45 runpilot2-wrapper.sh
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc    576529 Nov 21 15:45 pilot3.tar.gz
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:45 queuedata.json
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc       100 Nov 22 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:48:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 13:44 run_atlas
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc       105 Nov 22 13:44 job.xml
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc 409728012 Nov 22 13:44 EVNT.47483658._001020.pool.root.1
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc    590093 Nov 22 13:44 input.tar.gz
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:44 start_atlas.sh
[2025-11-22 13:48:25] drwxrwx--x 2 boinc boinc      4096 Nov 22 13:44 shared
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc         0 Nov 22 13:44 boinc_setup_complete
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      6194 Nov 22 13:44 init_data.xml
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc         0 Nov 22 13:44 boinc_lockfile
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      2784 Nov 22 13:44 pandaJob.out
[2025-11-22 13:48:25] -rw------- 1 boinc boinc    989768 Nov 22 13:44 agis_schedconf.cvmfs.json
[2025-11-22 13:48:25] -rw------- 1 boinc boinc   1526164 Nov 22 13:44 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:48:25] drwx------ 5 boinc boinc      4096 Nov 22 13:44 pilot3
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc       523 Nov 22 13:45 boinc_task_state.xml
[2025-11-22 13:48:25] -rw------- 1 boinc boinc       951 Nov 22 13:45 memory_monitor_summary.json
[2025-11-22 13:48:25] -rw------- 1 boinc boinc     55755 Nov 22 13:45 log.47556149._000062.job.log.tgz.1
[2025-11-22 13:48:25] -rw------- 1 boinc boinc        95 Nov 22 13:47 pilot_heartbeat.json
[2025-11-22 13:48:25] -rw------- 1 boinc boinc      8401 Nov 22 13:47 heartbeat.json
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc        23 Nov 22 13:48 wrapper_checkpoint.txt
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      8192 Nov 22 13:48 boinc_mmap_file
[2025-11-22 13:48:25] -rw------- 1 boinc boinc      4752 Nov 22 13:48 pilotlog.txt
[2025-11-22 13:48:25] -rw------- 1 boinc boinc     93842 Nov 22 13:48 log.47556149._000062.job.log.1
[2025-11-22 13:48:25] -rw------- 1 boinc boinc       186 Nov 22 13:48 output.list
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc       620 Nov 22 13:48 runtime_log
[2025-11-22 13:48:25] -rw------- 1 boinc boinc    174080 Nov 22 13:48 result.tar.gz
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      8744 Nov 22 13:48 runtime_log.err
[2025-11-22 13:48:25] -rw------- 1 boinc boinc       649 Nov 22 13:48 lEbKDmBZhg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWgHKDmMegXWo.diag
[2025-11-22 13:48:25] -rw-r--r-- 1 boinc boinc      7786 Nov 22 13:48 stderr.txt
[2025-11-22 13:48:25] No HITS result produced
[2025-11-22 13:48:25]  *** Contents of shared directory: ***
[2025-11-22 13:48:25] total 400900
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc 409728012 Nov 22 13:44 ATLAS.root_0
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc    590093 Nov 22 13:44 input.tar.gz
[2025-11-22 13:48:25] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:44 start_atlas.sh
[2025-11-22 13:48:25] -rw------- 1 boinc boinc    174080 Nov 22 13:48 result.tar.gz
13:48:26 (1090055): run_atlas exited; CPU time 33.047971
13:48:26 (1090055): called boinc_finish(0)

</stderr_txt>
]]>

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