Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:00 (1173340): wrapper (7.7.26015): starting
14:02:00 (1173340): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 14:02:00] Arguments: --nthreads 3
[2025-11-22 14:02:00] Threads: 3
[2025-11-22 14:02:00] Checking for CVMFS
[2025-11-22 14:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:02:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:02:00] 2.9.2.0 1027257 31 54348 153172 0 88 34681544 36864000 0 130560 0 438500 100.000 1296 4167 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 14:02:00] CVMFS is ok
[2025-11-22 14:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:02:00] Further information can be found at the LHC@home message board.
[2025-11-22 14:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:02:00] Checking for apptainer binary...
[2025-11-22 14:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:02:00] Running /usr/bin/apptainer --version
[2025-11-22 14:02:00] apptainer version 1.4.1-1.1
[2025-11-22 14:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:02:01] thA335
[2025-11-22 14:02:01] apptainer works
[2025-11-22 14:02:01] Set ATHENA_PROC_NUMBER=3
[2025-11-22 14:02:01] Set ATHENA_CORE_NUMBER=3
[2025-11-22 14:02:01] Starting ATLAS job with PandaID=6895324418
[2025-11-22 14:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:06:19]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:06:19] VERSION="7 (Core)"
[2025-11-22 14:06:19] ID="centos"
[2025-11-22 14:06:19] ID_LIKE="rhel fedora"
[2025-11-22 14:06:19] VERSION_ID="7"
[2025-11-22 14:06:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:06:19] ANSI_COLOR="0;31"
[2025-11-22 14:06:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:06:19] HOME_URL="https://www.centos.org/"
[2025-11-22 14:06:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:06:19] 
[2025-11-22 14:06:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:06:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:06:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:06:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:06:19] 
[2025-11-22 14:06:19] 2025-11-22 13:05:26,737 | INFO     | ***************************************
[2025-11-22 14:06:19] 2025-11-22 13:05:27,241 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | INFO     | sufficient remaining disk space (827475361792 B)
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | INFO     | update_server=False
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | INFO     | aborting loop
[2025-11-22 14:06:19] 2025-11-22 13:05:27,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:06:19] 2025-11-22 13:05:27,987 | INFO     | all data control threads have been joined
[2025-11-22 14:06:19] 2025-11-22 13:05:28,257 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,261 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,261 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,290 | INFO     | all payload control threads have been joined
[2025-11-22 14:06:19] 2025-11-22 13:05:28,589 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,895 | INFO     | all job control threads have been joined
[2025-11-22 14:06:19] 2025-11-22 13:05:28,931 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:28,993 | INFO     | [data] control thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,073 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,261 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,296 | INFO     | [payload] control thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,345 | INFO     | [job] validate thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,420 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,431 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,475 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,900 | INFO     | [job] control thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:29,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:06:19] 2025-11-22 13:05:33,999 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:06:19] 2025-11-22 13:05:57,394 | INFO     | PID=1177074 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:06:19] 2025-11-22 13:05:57,394 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:06:19] 2025-11-22 13:05:57,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:06:19] 2025-11-22 13:05:57,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:06:19] 2025-11-22 13:06:12,495 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:06:19] 2025-11-22 13:06:13,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931092756288)>', '<ExcThread(monitor, started 139930604910336)>']
[2025-11-22 14:06:19] 2025-11-22 13:06:14,484 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:06:19] 2025-11-22 13:06:14,484 | INFO     | [monitor] control thread has ended
[2025-11-22 14:06:19] 2025-11-22 13:06:18,873 | INFO     | all workflow threads have been joined
[2025-11-22 14:06:19] 2025-11-22 13:06:18,874 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:06:19] 2025-11-22 13:06:18,874 | INFO     | traces error code: 0
[2025-11-22 14:06:19] 2025-11-22 13:06:18,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:06:19] 2025-11-22 13:06:18,922 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:06:19] 2025-11-22 13:06:18,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:06:19] 2025-11-22 13:06:18,928 [wrapper] pilotpid: 1177074
[2025-11-22 14:06:19] 2025-11-22 13:06:18,931 [wrapper] Pilot exit status: 0
[2025-11-22 14:06:19] 2025-11-22 13:06:18,938 [wrapper] pandaids: 6895324418
[2025-11-22 14:06:19] 2025-11-22 13:06:18,953 [wrapper] cleanup supervisor_pilot 1177080 1177075
[2025-11-22 14:06:19] 2025-11-22 13:06:18,956 [wrapper] Test setup, not cleaning
[2025-11-22 14:06:19] 2025-11-22 13:06:18,959 [wrapper] apfmon messages muted
[2025-11-22 14:06:19] 2025-11-22 13:06:18,961 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:06:19] 2025-11-22 13:06:18,964 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:06:19]  *** Error codes and diagnostics ***
[2025-11-22 14:06:19]     "exeErrorCode": 65,
[2025-11-22 14:06:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 14:06:19]     "pilotErrorCode": 1305,
[2025-11-22 14:06:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 14:06:19]  *** Listing of results directory ***
[2025-11-22 14:06:19] total 405848
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-22 14:06:19] -rwx------ 1 boinc boinc     36292 Nov 21 15:21 runpilot2-wrapper.sh
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:21 queuedata.json
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc       100 Nov 22 14:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:06:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 14:01 run_atlas
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc       105 Nov 22 14:01 job.xml
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc 411394950 Nov 22 14:02 EVNT.47483658._000022.pool.root.1
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc    590103 Nov 22 14:02 input.tar.gz
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:02 start_atlas.sh
[2025-11-22 14:06:19] drwxrwx--x 2 boinc boinc      4096 Nov 22 14:02 shared
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:02 boinc_setup_complete
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      6194 Nov 22 14:02 init_data.xml
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:02 boinc_lockfile
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      2784 Nov 22 14:02 pandaJob.out
[2025-11-22 14:06:19] -rw------- 1 boinc boinc    989768 Nov 22 14:02 agis_schedconf.cvmfs.json
[2025-11-22 14:06:19] -rw------- 1 boinc boinc   1526164 Nov 22 14:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:06:19] drwx------ 5 boinc boinc      4096 Nov 22 14:02 pilot3
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc       522 Nov 22 14:03 boinc_task_state.xml
[2025-11-22 14:06:19] -rw------- 1 boinc boinc       978 Nov 22 14:03 memory_monitor_summary.json
[2025-11-22 14:06:19] -rw------- 1 boinc boinc     56291 Nov 22 14:03 log.47556137._000218.job.log.tgz.1
[2025-11-22 14:06:19] -rw------- 1 boinc boinc        95 Nov 22 14:05 pilot_heartbeat.json
[2025-11-22 14:06:19] -rw------- 1 boinc boinc      8394 Nov 22 14:05 heartbeat.json
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc        22 Nov 22 14:06 wrapper_checkpoint.txt
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      8192 Nov 22 14:06 boinc_mmap_file
[2025-11-22 14:06:19] -rw------- 1 boinc boinc      4752 Nov 22 14:06 pilotlog.txt
[2025-11-22 14:06:19] -rw------- 1 boinc boinc     92237 Nov 22 14:06 log.47556137._000218.job.log.1
[2025-11-22 14:06:19] -rw------- 1 boinc boinc       186 Nov 22 14:06 output.list
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc       620 Nov 22 14:06 runtime_log
[2025-11-22 14:06:19] -rw------- 1 boinc boinc    163840 Nov 22 14:06 result.tar.gz
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      8744 Nov 22 14:06 runtime_log.err
[2025-11-22 14:06:19] -rw------- 1 boinc boinc       649 Nov 22 14:06 pJsNDmGChg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIfHKDmUCkTcn.diag
[2025-11-22 14:06:19] -rw-r--r-- 1 boinc boinc      9037 Nov 22 14:06 stderr.txt
[2025-11-22 14:06:19] No HITS result produced
[2025-11-22 14:06:19]  *** Contents of shared directory: ***
[2025-11-22 14:06:19] total 402516
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc 411394950 Nov 22 14:02 ATLAS.root_0
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc    590103 Nov 22 14:02 input.tar.gz
[2025-11-22 14:06:19] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:02 start_atlas.sh
[2025-11-22 14:06:19] -rw------- 1 boinc boinc    163840 Nov 22 14:06 result.tar.gz
14:06:20 (1173340): run_atlas exited; CPU time 30.871136
14:06:20 (1173340): called boinc_finish(0)

</stderr_txt>
]]>

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