Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
15:03:14 (1211832): wrapper (7.7.26015): starting
15:03:14 (1211832): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 15:03:14] Arguments: --nthreads 4
[2025-11-22 15:03:14] Threads: 4
[2025-11-22 15:03:14] Checking for CVMFS
[2025-11-22 15:03:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 15:03:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 15:03:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 15:03:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 15:03:15] 2.13.2.0 489841 504 66252 153183 0 89 2619719 4096001 3648 130560 0 1937927 99.739 308333 1388 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 15:03:15] CVMFS is ok
[2025-11-22 15:03:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 15:03:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 15:03:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 15:03:15] Further information can be found at the LHC@home message board.
[2025-11-22 15:03:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:03:15] Checking for apptainer binary...
[2025-11-22 15:03:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 15:03:15] Running /usr/bin/apptainer --version
[2025-11-22 15:03:15] apptainer version 1.4.3
[2025-11-22 15:03:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:03:15] SETI64-Ubuntu
[2025-11-22 15:03:15] apptainer works
[2025-11-22 15:03:15] Set ATHENA_PROC_NUMBER=4
[2025-11-22 15:03:15] Set ATHENA_CORE_NUMBER=4
[2025-11-22 15:03:15] Starting ATLAS job with PandaID=6894275539
[2025-11-22 15:03:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:09:16]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:09:16] 2025-11-23 05:08:43,222 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:09:16] 2025-11-23 05:08:43,223 | INFO     | sum of square deviations: 47749769710.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,227 | INFO     | sum of deviations: 377150262254.50006
[2025-11-23 00:09:16] 2025-11-23 05:08:43,227 | INFO     | mean x: 1763858144.5
[2025-11-23 00:09:16] 2025-11-23 05:08:43,227 | INFO     | mean y: 2228047.6847014925
[2025-11-23 00:09:16] 2025-11-23 05:08:43,227 | INFO     | intersect: -13929557714.176113
[2025-11-23 00:09:16] 2025-11-23 05:08:43,228 | INFO     | chi2: 6.610770169869515
[2025-11-23 00:09:16] 2025-11-23 05:08:43,228 | INFO     | sum of square deviations: 46425912330.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,232 | INFO     | sum of deviations: 474634704190.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,232 | INFO     | mean x: 1763857992.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,232 | INFO     | mean y: 2239256.009416196
[2025-11-23 00:09:16] 2025-11-23 05:08:43,233 | INFO     | intersect: -18030539729.8998
[2025-11-23 00:09:16] 2025-11-23 05:08:43,233 | INFO     | chi2: 4.724217898193477
[2025-11-23 00:09:16] 2025-11-23 05:08:43,233 | INFO     | current chi2=4.724217898193477 (change=28.537556490385075 %)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,233 | INFO     | sum of square deviations: 45126753087.5
[2025-11-23 00:09:16] 2025-11-23 05:08:43,237 | INFO     | sum of deviations: 467941899662.99994
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | mean x: 1763857839.5
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | mean y: 2238470.4486692017
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | intersect: -18288086706.519005
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | chi2: 4.722801585692927
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | current chi2=4.722801585692927 (change=0.029979830123674524 %)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,238 | INFO     | right removable region: 525
[2025-11-23 00:09:16] 2025-11-23 05:08:43,239 | INFO     | sum of square deviations: 46425912330.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | sum of deviations: 240981561095.00024
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | mean x: 1763858297.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | mean y: 2243722.8173258
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | intersect: -9153361512.03684
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | chi2: 3.718330547360832
[2025-11-23 00:09:16] 2025-11-23 05:08:43,243 | INFO     | current chi2=3.718330547360832 (change=43.75344397377189 %)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,244 | INFO     | sum of square deviations: 45126753087.5
[2025-11-23 00:09:16] 2025-11-23 05:08:43,248 | INFO     | sum of deviations: 134274121588.00005
[2025-11-23 00:09:16] 2025-11-23 05:08:43,248 | INFO     | mean x: 1763858449.5
[2025-11-23 00:09:16] 2025-11-23 05:08:43,248 | INFO     | mean y: 2256240.224334601
[2025-11-23 00:09:16] 2025-11-23 05:08:43,248 | INFO     | intersect: -5246083773.358173
[2025-11-23 00:09:16] 2025-11-23 05:08:43,248 | INFO     | chi2: 2.0199698934452526
[2025-11-23 00:09:16] 2025-11-23 05:08:43,249 | INFO     | current chi2=2.0199698934452526 (change=45.675354363560515 %)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,249 | INFO     | sum of square deviations: 43852059420.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,253 | INFO     | sum of deviations: 115956985407.00026
[2025-11-23 00:09:16] 2025-11-23 05:08:43,253 | INFO     | mean x: 1763858602.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,253 | INFO     | mean y: 2258429.2226487524
[2025-11-23 00:09:16] 2025-11-23 05:08:43,253 | INFO     | intersect: -4661872033.002422
[2025-11-23 00:09:16] 2025-11-23 05:08:43,253 | INFO     | chi2: 1.9884903353959273
[2025-11-23 00:09:16] 2025-11-23 05:08:43,254 | INFO     | current chi2=1.9884903353959273 (change=1.558417189853945 %)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,254 | INFO     | left removable region: 30
[2025-11-23 00:09:16] 2025-11-23 05:08:43,254 | INFO     | sum of square deviations: 37609040040.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | sum of deviations: 167965441447.0001
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | mean x: 1763858724.0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | mean y: 2274882.2303030305
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | intersect: -7875280857.339228
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | chi2: 0.03537842930933518
[2025-11-23 00:09:16] 2025-11-23 05:08:43,258 | INFO     | current memory leak: 4.47 B/s (using 495 data points, chi2=0.04)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | could have reported an average CPU frequency of 2306 MHz (22 samples)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | ..............................
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . Timing measurements:
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . get job = 0 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . initial setup = 3 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . payload setup = 4 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . stage-in = 0 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . payload execution = 32682 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . stage-out = 4 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | . log creation = 0 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,259 | INFO     | ..............................
[2025-11-23 00:09:16] 2025-11-23 05:08:43,783 | INFO     | 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,783 | INFO     | job summary report
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | --------------------------------------------------
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | PanDA job id: 6894275539
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | task id: 47533967
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | errors: (none)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | pilot state: finished 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | transexitcode: 0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | exeerrorcode: 0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | exeerrordiag: 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | exitcode: 0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | exitmsg: OK
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | cpuconsumptiontime: 128181 s
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | nevents: 1000
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | neventsw: 0
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | pid: 1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | pgrp: 1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:43,784 | INFO     | corecount: 4
[2025-11-23 00:09:16] 2025-11-23 05:08:43,785 | INFO     | event service: False
[2025-11-23 00:09:16] 2025-11-23 05:08:43,785 | INFO     | sizes: {0: 2298822, 1: 2298822, 4: 2299112, 11: 2299140, 32691: 2338946, 32696: 2347970, 32700: 2348182, 32705: 2348428}
[2025-11-23 00:09:16] 2025-11-23 05:08:43,785 | INFO     | --------------------------------------------------
[2025-11-23 00:09:16] 2025-11-23 05:08:43,785 | INFO     | 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,785 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/12
[2025-11-23 00:09:16] 2025-11-23 05:08:43,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,801 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,801 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,801 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,802 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | job 6894275539 has completed (purged errors)
[2025-11-23 00:09:16] 2025-11-23 05:08:43,803 | INFO     | overall cleanup function is called
[2025-11-23 00:09:16] 2025-11-23 05:08:43,982 | INFO     | PID=1217307 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 00:09:16] 2025-11-23 05:08:43,982 | INFO     | .. there are 7 such processes running
[2025-11-23 00:09:16] 2025-11-23 05:08:44,821 | INFO     | --- collectZombieJob: --- 10, [1236702]
[2025-11-23 00:09:16] 2025-11-23 05:08:44,822 | INFO     | zombie collector waiting for pid 1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:44,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:09:16] 2025-11-23 05:08:44,822 | INFO     | collected zombie processes
[2025-11-23 00:09:16] 2025-11-23 05:08:44,822 | INFO     | will attempt to kill all subprocesses of pid=1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:45,165 | INFO     | process IDs to be killed: [1236702] (in reverse order)
[2025-11-23 00:09:16] 2025-11-23 05:08:45,255 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:09:16] 2025-11-23 05:08:45,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:09:16] 2025-11-23 05:08:45,265 | INFO     | did not find any defunct processes belonging to 1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:45,275 | INFO     | did not find any defunct processes belonging to 1236702
[2025-11-23 00:09:16] 2025-11-23 05:08:45,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:09:16] 2025-11-23 05:08:45,276 | INFO     | ready for new job
[2025-11-23 00:09:16] 2025-11-23 05:08:45,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:09:16] 2025-11-23 05:08:45,279 | INFO     | ***************************************
[2025-11-23 00:09:16] 2025-11-23 05:08:45,279 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:09:16] 2025-11-23 05:08:45,279 | INFO     | ***************************************
[2025-11-23 00:09:16] 2025-11-23 05:08:45,279 | INFO     | 
[2025-11-23 00:09:16] 2025-11-23 05:08:45,285 | INFO     | architecture information:
[2025-11-23 00:09:16] 2025-11-23 05:08:45,286 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:09:16] 2025-11-23 05:08:45,297 | INFO     | cat /etc/os-release:
[2025-11-23 00:09:16] NAME="CentOS Linux"
[2025-11-23 00:09:16] VERSION="7 (Core)"
[2025-11-23 00:09:16] ID="centos"
[2025-11-23 00:09:16] ID_LIKE="rhel fedora"
[2025-11-23 00:09:16] VERSION_ID="7"
[2025-11-23 00:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:09:16] ANSI_COLOR="0;31"
[2025-11-23 00:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:09:16] HOME_URL="https://www.centos.org/"
[2025-11-23 00:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:09:16] 
[2025-11-23 00:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:09:16] 
[2025-11-23 00:09:16] 2025-11-23 05:08:45,297 | INFO     | ***************************************
[2025-11-23 00:09:16] 2025-11-23 05:08:45,799 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/12
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | INFO     | sufficient remaining disk space (372372406272 B)
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | INFO     | update_server=False
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:09:16] 2025-11-23 05:08:45,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:09:16] 2025-11-23 05:08:45,873 | INFO     | all data control threads have been joined
[2025-11-23 00:09:16] 2025-11-23 05:08:45,882 | INFO     | all job control threads have been joined
[2025-11-23 00:09:16] 2025-11-23 05:08:46,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:09:16] 2025-11-23 05:08:46,546 | INFO     | aborting loop
[2025-11-23 00:09:16] 2025-11-23 05:08:46,819 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:46,876 | INFO     | [data] control thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:46,887 | INFO     | [job] control thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,109 | INFO     | all payload control threads have been joined
[2025-11-23 00:09:16] 2025-11-23 05:08:47,195 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,197 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,296 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,552 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,581 | INFO     | [job] validate thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,819 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:47,951 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:48,017 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:48,115 | INFO     | [payload] control thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:48,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:09:16] 2025-11-23 05:08:48,400 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:48,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:09:16] 2025-11-23 05:08:49,321 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:08:52,853 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:09:16] 2025-11-23 05:09:09,671 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:09:16] 2025-11-23 05:09:11,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139132156000064)>', '<ExcThread(monitor, started 139131791316736)>']
[2025-11-23 00:09:16] 2025-11-23 05:09:16,040 | INFO     | all workflow threads have been joined
[2025-11-23 00:09:16] 2025-11-23 05:09:16,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:09:16] 2025-11-23 05:09:16,041 | INFO     | traces error code: 0
[2025-11-23 00:09:16] 2025-11-23 05:09:16,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:09:16] 2025-11-23 05:09:16,435 | INFO     | PID=1217307 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 00:09:16] 2025-11-23 05:09:16,435 | INFO     | .. there are 7 such processes running
[2025-11-23 00:09:16] 2025-11-23 05:09:16,436 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:09:16] 2025-11-23 05:09:16,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:09:16] 2025-11-23 05:09:16,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:09:16] 2025-11-23 05:09:16,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:09:16] 2025-11-23 05:09:16,436 | INFO     | [monitor] control thread has ended
[2025-11-23 00:09:16] 2025-11-23 05:09:16,516 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:09:16] 2025-11-23 05:09:16,519 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:09:16] 2025-11-23 05:09:16,522 [wrapper] pilotpid: 1217307
[2025-11-23 00:09:16] 2025-11-23 05:09:16,525 [wrapper] Pilot exit status: 0
[2025-11-23 00:09:16] 2025-11-23 05:09:16,534 [wrapper] pandaids: 6894275539
[2025-11-23 00:09:16] 2025-11-23 05:09:16,616 [wrapper] cleanup supervisor_pilot 1712425 1217308
[2025-11-23 00:09:16] 2025-11-23 05:09:16,618 [wrapper] Test setup, not cleaning
[2025-11-23 00:09:16] 2025-11-23 05:09:16,620 [wrapper] apfmon messages muted
[2025-11-23 00:09:16] 2025-11-23 05:09:16,623 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:09:16] 2025-11-23 05:09:16,625 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:09:16]  *** Error codes and diagnostics ***
[2025-11-23 00:09:16]     "exeErrorCode": 0,
[2025-11-23 00:09:16]     "exeErrorDiag": "",
[2025-11-23 00:09:16]     "pilotErrorCode": 0,
[2025-11-23 00:09:16]     "pilotErrorDiag": "",
[2025-11-23 00:09:16]  *** Listing of results directory ***
[2025-11-23 00:09:16] total 1311256
[2025-11-23 00:09:16] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-23 00:09:16] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 02:36 runpilot2-wrapper.sh
[2025-11-23 00:09:16] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 02:36 queuedata.json
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 15:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:09:16] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 15:03 run_atlas
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 15:03 job.xml
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd 408242068 Nov 22 15:03 EVNT.47493127._002309.pool.root.1
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 15:03 start_atlas.sh
[2025-11-23 00:09:16] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 15:03 shared
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd    590101 Nov 22 15:03 input.tar.gz
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd      9475 Nov 22 15:03 init_data.xml
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 15:03 boinc_setup_complete
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 15:03 boinc_lockfile
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd      2786 Nov 22 15:03 pandaJob.out
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd    989768 Nov 22 15:03 agis_schedconf.cvmfs.json
[2025-11-23 00:09:16] drwx------ 5 whitlerd whitlerd      4096 Nov 22 15:03 pilot3
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 23 00:02 boinc_task_state.xml
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd 918576488 Nov 23 00:08 HITS.47533967._002804.pool.root.1
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd      1037 Nov 23 00:08 memory_monitor_summary.json
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 00:08 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd   1359088 Nov 23 00:08 log.47533967._002804.job.log.tgz.1
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd      8574 Nov 23 00:08 heartbeat.json
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 00:09 boinc_mmap_file
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 00:09 wrapper_checkpoint.txt
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd        95 Nov 23 00:09 pilot_heartbeat.json
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd       822 Nov 23 00:09 pilotlog.txt
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd   4633416 Nov 23 00:09 log.47533967._002804.job.log.1
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd       353 Nov 23 00:09 output.list
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 00:09 runtime_log
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd   6010880 Nov 23 00:09 result.tar.gz
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd       658 Nov 23 00:09 XboNDmEsag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZRHKDmzS1qsn.diag
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 23 00:09 runtime_log.err
[2025-11-23 00:09:16] -rw-rw-r-- 1 whitlerd whitlerd     21260 Nov 23 00:09 stderr.txt
[2025-11-23 00:09:16] HITS file was successfully produced:
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd 918576488 Nov 23 00:08 shared/HITS.pool.root.1
[2025-11-23 00:09:16]  *** Contents of shared directory: ***
[2025-11-23 00:09:16] total 1302200
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd 408242068 Nov 22 15:03 ATLAS.root_0
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 15:03 start_atlas.sh
[2025-11-23 00:09:16] -rw-r--r-- 2 whitlerd whitlerd    590101 Nov 22 15:03 input.tar.gz
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd 918576488 Nov 23 00:08 HITS.pool.root.1
[2025-11-23 00:09:16] -rw------- 1 whitlerd whitlerd   6010880 Nov 23 00:09 result.tar.gz
00:09:18 (1211832): run_atlas exited; CPU time 129174.353025
00:09:18 (1211832): called boinc_finish(0)

</stderr_txt>
]]>

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