Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:24 (1722260): wrapper (7.7.26015): starting
00:09:24 (1722260): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 00:09:24] Arguments: --nthreads 4
[2025-11-23 00:09:24] Threads: 4
[2025-11-23 00:09:24] Checking for CVMFS
[2025-11-23 00:09:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:09:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:09:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:09:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:09:25] 2.13.2.0 489841 1050 60912 153197 2 90 2673014 4096001 4714 130560 0 3184171 99.838 325636 1343 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 00:09:25] CVMFS is ok
[2025-11-23 00:09:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:09:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 00:09:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 00:09:25] Further information can be found at the LHC@home message board.
[2025-11-23 00:09:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:09:25] Checking for apptainer binary...
[2025-11-23 00:09:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:09:25] Running /usr/bin/apptainer --version
[2025-11-23 00:09:25] apptainer version 1.4.3
[2025-11-23 00:09:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:09:25] SETI64-Ubuntu
[2025-11-23 00:09:25] apptainer works
[2025-11-23 00:09:25] Set ATHENA_PROC_NUMBER=4
[2025-11-23 00:09:25] Set ATHENA_CORE_NUMBER=4
[2025-11-23 00:09:25] Starting ATLAS job with PandaID=6895325346
[2025-11-23 00:09:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:08:27]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:08:27] 2025-11-23 14:07:53,843 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 09:08:27] 2025-11-23 14:07:53,864 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2293.744000000001
[2025-11-23 09:08:27] 2025-11-23 14:07:53,888 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/12/PanDA_Pilot-6895325346/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,888 | INFO     | extracted standard info from prmon json
[2025-11-23 09:08:27] 2025-11-23 14:07:53,889 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:08:27] 2025-11-23 14:07:53,889 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:08:27] 2025-11-23 14:07:53,893 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:08:27] 2025-11-23 14:07:53,894 | INFO     | sum of square deviations: 45903297880.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,897 | INFO     | sum of deviations: 260948456488.99994
[2025-11-23 09:08:27] 2025-11-23 14:07:53,897 | INFO     | mean x: 1763890704.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,897 | INFO     | mean y: 2263331.9735349715
[2025-11-23 09:08:27] 2025-11-23 14:07:53,897 | INFO     | intersect: -10025002199.739836
[2025-11-23 09:08:27] 2025-11-23 14:07:53,898 | INFO     | chi2: 3.3650925417881266
[2025-11-23 09:08:27] 2025-11-23 14:07:53,898 | INFO     | sum of square deviations: 44613952775.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | sum of deviations: 343081314453.5
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | mean x: 1763890551.5
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | mean y: 2273022.677480916
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | intersect: -13562046014.747892
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | chi2: 1.9080525441098417
[2025-11-23 09:08:27] 2025-11-23 14:07:53,902 | INFO     | current chi2=1.9080525441098417 (change=43.29866057425125 %)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,903 | INFO     | sum of square deviations: 43348980220.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,906 | INFO     | sum of deviations: 339626573994.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,906 | INFO     | mean x: 1763890399.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,906 | INFO     | mean y: 2272603.8342967243
[2025-11-23 09:08:27] 2025-11-23 14:07:53,906 | INFO     | intersect: -13817292471.813972
[2025-11-23 09:08:27] 2025-11-23 14:07:53,907 | INFO     | chi2: 1.9001910873859924
[2025-11-23 09:08:27] 2025-11-23 14:07:53,907 | INFO     | current chi2=1.9001910873859924 (change=0.41201468733749597 %)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,907 | INFO     | right removable region: 518
[2025-11-23 09:08:27] 2025-11-23 14:07:53,907 | INFO     | sum of square deviations: 44613952775.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | sum of deviations: 168447424772.99997
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | mean x: 1763890856.5
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | mean y: 2274234.9122137404
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | intersect: -6657590087.277208
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | chi2: 1.5562077779204828
[2025-11-23 09:08:27] 2025-11-23 14:07:53,911 | INFO     | current chi2=1.5562077779204828 (change=53.754383910834356 %)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,912 | INFO     | sum of square deviations: 43348980220.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,915 | INFO     | sum of deviations: 151963608028.99997
[2025-11-23 09:08:27] 2025-11-23 14:07:53,915 | INFO     | mean x: 1763891009.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,915 | INFO     | mean y: 2276221.909441233
[2025-11-23 09:08:27] 2025-11-23 14:07:53,915 | INFO     | intersect: -6181196619.60123
[2025-11-23 09:08:27] 2025-11-23 14:07:53,916 | INFO     | chi2: 1.5369440832115828
[2025-11-23 09:08:27] 2025-11-23 14:07:53,916 | INFO     | current chi2=1.5369440832115828 (change=1.2378613564469862 %)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,916 | INFO     | left removable region: 20
[2025-11-23 09:08:27] 2025-11-23 14:07:53,916 | INFO     | sum of square deviations: 38296995264.5
[2025-11-23 09:08:27] 2025-11-23 14:07:53,919 | INFO     | sum of deviations: 202511979415.0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,919 | INFO     | mean x: 1763890978.5
[2025-11-23 09:08:27] 2025-11-23 14:07:53,919 | INFO     | mean y: 2289353.124497992
[2025-11-23 09:08:27] 2025-11-23 14:07:53,919 | INFO     | intersect: -9325049542.817991
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | chi2: 0.04369418629953456
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | current memory leak: 5.29 B/s (using 498 data points, chi2=0.04)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | could have reported an average CPU frequency of 2266 MHz (21 samples)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | ..............................
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | . Timing measurements:
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | . get job = 0 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | . initial setup = 3 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,920 | INFO     | . payload setup = 5 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,921 | INFO     | . stage-in = 0 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,921 | INFO     | . payload execution = 32262 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,921 | INFO     | . stage-out = 4 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,921 | INFO     | . log creation = 0 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,921 | INFO     | ..............................
[2025-11-23 09:08:27] 2025-11-23 14:07:53,990 | INFO     | 
[2025-11-23 09:08:27] 2025-11-23 14:07:53,990 | INFO     | job summary report
[2025-11-23 09:08:27] 2025-11-23 14:07:53,990 | INFO     | --------------------------------------------------
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | PanDA job id: 6895325346
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | task id: 47556137
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | errors: (none)
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | pilot state: finished 
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | transexitcode: 0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | exeerrorcode: 0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | exeerrordiag: 
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | exitcode: 0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | exitmsg: OK
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | cpuconsumptiontime: 128097 s
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | nevents: 1000
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | neventsw: 0
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | pid: 1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | pgrp: 1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | corecount: 4
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | event service: False
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | sizes: {0: 2298818, 1: 2298818, 4: 2299108, 11: 2299136, 32271: 2338596, 32276: 2347832, 32283: 2348022}
[2025-11-23 09:08:27] 2025-11-23 14:07:53,991 | INFO     | --------------------------------------------------
[2025-11-23 09:08:27] 2025-11-23 14:07:53,992 | INFO     | 
[2025-11-23 09:08:27] 2025-11-23 14:07:53,992 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/12
[2025-11-23 09:08:27] 2025-11-23 14:07:54,016 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,017 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,018 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:08:27] 2025-11-23 14:07:54,018 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,018 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:08:27] 2025-11-23 14:07:54,018 | INFO     | job 6895325346 has completed (purged errors)
[2025-11-23 09:08:27] 2025-11-23 14:07:54,018 | INFO     | overall cleanup function is called
[2025-11-23 09:08:27] 2025-11-23 14:07:55,029 | INFO     | --- collectZombieJob: --- 10, [1733773]
[2025-11-23 09:08:27] 2025-11-23 14:07:55,029 | INFO     | zombie collector waiting for pid 1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:55,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:08:27] 2025-11-23 14:07:55,029 | INFO     | collected zombie processes
[2025-11-23 09:08:27] 2025-11-23 14:07:55,030 | INFO     | will attempt to kill all subprocesses of pid=1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:55,431 | INFO     | process IDs to be killed: [1733773] (in reverse order)
[2025-11-23 09:08:27] 2025-11-23 14:07:55,555 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:08:27] 2025-11-23 14:07:55,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:08:27] 2025-11-23 14:07:55,564 | INFO     | did not find any defunct processes belonging to 1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:55,572 | INFO     | did not find any defunct processes belonging to 1733773
[2025-11-23 09:08:27] 2025-11-23 14:07:55,574 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:08:27] 2025-11-23 14:07:55,574 | INFO     | ready for new job
[2025-11-23 09:08:27] 2025-11-23 14:07:55,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:08:27] 2025-11-23 14:07:55,576 | INFO     | ***************************************
[2025-11-23 09:08:27] 2025-11-23 14:07:55,576 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:08:27] 2025-11-23 14:07:55,576 | INFO     | ***************************************
[2025-11-23 09:08:27] 2025-11-23 14:07:55,576 | INFO     | 
[2025-11-23 09:08:27] 2025-11-23 14:07:55,581 | INFO     | architecture information:
[2025-11-23 09:08:27] 2025-11-23 14:07:55,582 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:08:27] 2025-11-23 14:07:55,594 | INFO     | cat /etc/os-release:
[2025-11-23 09:08:27] NAME="CentOS Linux"
[2025-11-23 09:08:27] VERSION="7 (Core)"
[2025-11-23 09:08:27] ID="centos"
[2025-11-23 09:08:27] ID_LIKE="rhel fedora"
[2025-11-23 09:08:27] VERSION_ID="7"
[2025-11-23 09:08:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:08:27] ANSI_COLOR="0;31"
[2025-11-23 09:08:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:08:27] HOME_URL="https://www.centos.org/"
[2025-11-23 09:08:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:08:27] 
[2025-11-23 09:08:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:08:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:08:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:08:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:08:27] 
[2025-11-23 09:08:27] 2025-11-23 14:07:55,594 | INFO     | ***************************************
[2025-11-23 09:08:27] 2025-11-23 14:07:56,097 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/12
[2025-11-23 09:08:27] 2025-11-23 14:07:56,118 | INFO     | sufficient remaining disk space (379907473408 B)
[2025-11-23 09:08:27] 2025-11-23 14:07:56,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:08:27] 2025-11-23 14:07:56,119 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:08:27] 2025-11-23 14:07:56,119 | INFO     | update_server=False
[2025-11-23 09:08:27] 2025-11-23 14:07:56,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:08:27] 2025-11-23 14:07:56,261 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 09:08:27] 2025-11-23 14:07:56,262 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 09:08:27] 2025-11-23 14:07:56,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:08:27] 2025-11-23 14:07:56,262 | INFO     | will abort loop
[2025-11-23 09:08:27] 2025-11-23 14:07:56,617 | INFO     | all job control threads have been joined
[2025-11-23 09:08:27] 2025-11-23 14:07:57,123 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,154 | INFO     | all data control threads have been joined
[2025-11-23 09:08:27] 2025-11-23 14:07:57,267 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:08:27] 2025-11-23 14:07:57,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:08:27] 2025-11-23 14:07:57,436 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,462 | INFO     | all payload control threads have been joined
[2025-11-23 09:08:27] 2025-11-23 14:07:57,620 | INFO     | [job] validate thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,622 | INFO     | [job] control thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,671 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,845 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:57,974 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:58,160 | INFO     | [data] control thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:58,468 | INFO     | [payload] control thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:58,582 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:07:58,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:08:27] 2025-11-23 14:07:59,310 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:08:00,000 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:08:01,386 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:08:06,380 | INFO     | job.realtimelogging is not enabled
[2025-11-23 09:08:27] 2025-11-23 14:08:07,386 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:08:27] 2025-11-23 14:08:21,317 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:08:27] 2025-11-23 14:08:21,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139099830011712)>', '<ExcThread(monitor, started 139098798933760)>']
[2025-11-23 09:08:27] 2025-11-23 14:08:26,635 | INFO     | all workflow threads have been joined
[2025-11-23 09:08:27] 2025-11-23 14:08:26,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:08:27] 2025-11-23 14:08:26,636 | INFO     | traces error code: 0
[2025-11-23 09:08:27] 2025-11-23 14:08:26,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | INFO     | PID=1726515 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | INFO     | .. there are 2 such processes running
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:08:27] 2025-11-23 14:08:26,773 | INFO     | [monitor] control thread has ended
[2025-11-23 09:08:27] 2025-11-23 14:08:26,889 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:08:27] 2025-11-23 14:08:26,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:08:27] 2025-11-23 14:08:26,898 [wrapper] pilotpid: 1726515
[2025-11-23 09:08:27] 2025-11-23 14:08:26,900 [wrapper] Pilot exit status: 0
[2025-11-23 09:08:27] 2025-11-23 14:08:26,909 [wrapper] pandaids: 6895325346
[2025-11-23 09:08:27] 2025-11-23 14:08:26,971 [wrapper] cleanup supervisor_pilot 1962838 1726516
[2025-11-23 09:08:27] 2025-11-23 14:08:26,974 [wrapper] Test setup, not cleaning
[2025-11-23 09:08:27] 2025-11-23 14:08:26,977 [wrapper] apfmon messages muted
[2025-11-23 09:08:27] 2025-11-23 14:08:26,979 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:08:27] 2025-11-23 14:08:26,982 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:08:27]  *** Error codes and diagnostics ***
[2025-11-23 09:08:27]     "exeErrorCode": 0,
[2025-11-23 09:08:27]     "exeErrorDiag": "",
[2025-11-23 09:08:27]     "pilotErrorCode": 0,
[2025-11-23 09:08:27]     "pilotErrorDiag": "",
[2025-11-23 09:08:27]  *** Listing of results directory ***
[2025-11-23 09:08:27] total 1312228
[2025-11-23 09:08:27] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:45 runpilot2-wrapper.sh
[2025-11-23 09:08:27] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 09:45 pilot3.tar.gz
[2025-11-23 09:08:27] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:45 queuedata.json
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 23 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:08:27] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 23 00:09 run_atlas
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 23 00:09 job.xml
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd 407997339 Nov 23 00:09 EVNT.47483658._000034.pool.root.1
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 23 00:09 start_atlas.sh
[2025-11-23 09:08:27] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 23 00:09 shared
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd    590094 Nov 23 00:09 input.tar.gz
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd      9475 Nov 23 00:09 init_data.xml
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 23 00:09 boinc_setup_complete
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 23 00:09 boinc_lockfile
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 23 00:09 pandaJob.out
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd    989784 Nov 23 00:09 agis_schedconf.cvmfs.json
[2025-11-23 09:08:27] drwx------ 5 whitlerd whitlerd      4096 Nov 23 00:09 pilot3
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd       533 Nov 23 09:01 boinc_task_state.xml
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd 919936935 Nov 23 09:07 HITS.47556137._000338.pool.root.1
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd        95 Nov 23 09:07 pilot_heartbeat.json
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd      1029 Nov 23 09:07 memory_monitor_summary.json
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 09:07 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd   1352931 Nov 23 09:07 log.47556137._000338.job.log.tgz.1
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd      8548 Nov 23 09:07 heartbeat.json
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 09:08 boinc_mmap_file
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 09:08 wrapper_checkpoint.txt
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd       822 Nov 23 09:08 pilotlog.txt
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd   4581072 Nov 23 09:08 log.47556137._000338.job.log.1
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd       353 Nov 23 09:08 output.list
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 09:08 runtime_log
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd   5949440 Nov 23 09:08 result.tar.gz
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 23 09:08 runtime_log.err
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd       656 Nov 23 09:08 fxUKDmBZhg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRgHKDmLLZbbm.diag
[2025-11-23 09:08:27] -rw-rw-r-- 1 whitlerd whitlerd     21312 Nov 23 09:08 stderr.txt
[2025-11-23 09:08:27] HITS file was successfully produced:
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd 919936935 Nov 23 09:07 shared/HITS.pool.root.1
[2025-11-23 09:08:27]  *** Contents of shared directory: ***
[2025-11-23 09:08:27] total 1303228
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd 407997339 Nov 23 00:09 ATLAS.root_0
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 23 00:09 start_atlas.sh
[2025-11-23 09:08:27] -rw-r--r-- 2 whitlerd whitlerd    590094 Nov 23 00:09 input.tar.gz
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd 919936935 Nov 23 09:07 HITS.pool.root.1
[2025-11-23 09:08:27] -rw------- 1 whitlerd whitlerd   5949440 Nov 23 09:08 result.tar.gz
09:08:28 (1722260): run_atlas exited; CPU time 128869.108982
09:08:28 (1722260): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN