Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:08:06 (29652): wrapper (7.7.26015): starting
07:08:06 (29652): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 07:08:06] Arguments: --nthreads 8
[2025-11-22 07:08:06] Threads: 8
[2025-11-22 07:08:06] Checking for CVMFS
[2025-11-22 07:08:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:08:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:08:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:08:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:08:06] 2.11.2.0 2910 41636 84520 153171 0 1 10754430 20275201 1 130560 0 4534909 99.476 2850506 28203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:08:06] CVMFS is ok
[2025-11-22 07:08:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:08:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:08:06] Further information can be found at the LHC@home message board.
[2025-11-22 07:08:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:08:06] Checking for apptainer binary...
[2025-11-22 07:08:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:08:06] Running /usr/bin/apptainer --version
[2025-11-22 07:08:06] apptainer version 1.3.2-1.el7
[2025-11-22 07:08:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:08:08] c-204-13.aglt2.org
[2025-11-22 07:08:08] apptainer works
[2025-11-22 07:08:08] Set ATHENA_PROC_NUMBER=8
[2025-11-22 07:08:08] Set ATHENA_CORE_NUMBER=8
[2025-11-22 07:08:08] Starting ATLAS job with PandaID=6895325306
[2025-11-22 07:08:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:49:02]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:49:02] 2025-11-23 00:48:28,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:49:02] 2025-11-23 00:48:28,928 | INFO     | time since job start (45602s) is within the limit (172800.0s)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,025 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 19:49:02] 2025-11-23 00:48:29,029 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-22 19:49:02] 2025-11-23 00:48:29,030 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895325306/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,031 | INFO     | extracted standard info from prmon json
[2025-11-22 19:49:02] 2025-11-23 00:48:29,031 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:49:02] 2025-11-23 00:48:29,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:49:02] 2025-11-23 00:48:29,043 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:49:02] 2025-11-23 00:48:29,044 | INFO     | sum of square deviations: 129252500134.40979
[2025-11-22 19:49:02] 2025-11-23 00:48:29,055 | INFO     | sum of deviations: 859722197422.0956
[2025-11-22 19:49:02] 2025-11-23 00:48:29,056 | INFO     | mean x: 1763836092.6385543
[2025-11-22 19:49:02] 2025-11-23 00:48:29,056 | INFO     | mean y: 3217416.4966532798
[2025-11-22 19:49:02] 2025-11-23 00:48:29,056 | INFO     | intersect: -11728927337.98551
[2025-11-22 19:49:02] 2025-11-23 00:48:29,057 | INFO     | chi2: 5.9856981562305505
[2025-11-22 19:49:02] 2025-11-23 00:48:29,058 | INFO     | sum of square deviations: 126674541464.85722
[2025-11-22 19:49:02] 2025-11-23 00:48:29,069 | INFO     | sum of deviations: 1120969249255.1436
[2025-11-22 19:49:02] 2025-11-23 00:48:29,069 | INFO     | mean x: 1763835940.142857
[2025-11-22 19:49:02] 2025-11-23 00:48:29,069 | INFO     | mean y: 3232864.6967654987
[2025-11-22 19:49:02] 2025-11-23 00:48:29,070 | INFO     | intersect: -15605316625.728716
[2025-11-22 19:49:02] 2025-11-23 00:48:29,070 | INFO     | chi2: 3.19123517203898
[2025-11-22 19:49:02] 2025-11-23 00:48:29,071 | INFO     | current chi2=3.19123517203898 (change=46.685664917513364 %)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,071 | INFO     | sum of square deviations: 124131095070.27678
[2025-11-22 19:49:02] 2025-11-23 00:48:29,082 | INFO     | sum of deviations: 1236474802532.8057
[2025-11-22 19:49:02] 2025-11-23 00:48:29,082 | INFO     | mean x: 1763835787.6472185
[2025-11-22 19:49:02] 2025-11-23 00:48:29,083 | INFO     | mean y: 3239782.6607869742
[2025-11-22 19:49:02] 2025-11-23 00:48:29,083 | INFO     | intersect: -17566399041.49244
[2025-11-22 19:49:02] 2025-11-23 00:48:29,084 | INFO     | chi2: 2.5206098165276654
[2025-11-22 19:49:02] 2025-11-23 00:48:29,084 | INFO     | current chi2=2.5206098165276654 (change=21.0146015369601 %)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,084 | INFO     | right removable region: 736
[2025-11-22 19:49:02] 2025-11-23 00:48:29,085 | INFO     | sum of square deviations: 126674250494.85716
[2025-11-22 19:49:02] 2025-11-23 00:48:29,096 | INFO     | sum of deviations: 625470630909.8564
[2025-11-22 19:49:02] 2025-11-23 00:48:29,096 | INFO     | mean x: 1763836245.142857
[2025-11-22 19:49:02] 2025-11-23 00:48:29,096 | INFO     | mean y: 3231252.2371967654
[2025-11-22 19:49:02] 2025-11-23 00:48:29,097 | INFO     | intersect: -8705940223.112995
[2025-11-22 19:49:02] 2025-11-23 00:48:29,097 | INFO     | chi2: 3.699200028789428
[2025-11-22 19:49:02] 2025-11-23 00:48:29,098 | INFO     | current chi2=3.699200028789428 (change=38.19935566014288 %)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,099 | INFO     | sum of square deviations: 124130513130.27675
[2025-11-22 19:49:02] 2025-11-23 00:48:29,110 | INFO     | sum of deviations: 561486620349.0974
[2025-11-22 19:49:02] 2025-11-23 00:48:29,110 | INFO     | mean x: 1763836397.6472185
[2025-11-22 19:49:02] 2025-11-23 00:48:29,110 | INFO     | mean y: 3235087.169606513
[2025-11-22 19:49:02] 2025-11-23 00:48:29,110 | INFO     | intersect: -7975226556.054694
[2025-11-22 19:49:02] 2025-11-23 00:48:29,111 | INFO     | chi2: 3.602790836779329
[2025-11-22 19:49:02] 2025-11-23 00:48:29,111 | INFO     | current chi2=3.602790836779329 (change=2.6062173242804887 %)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,111 | INFO     | left removable region: 20
[2025-11-22 19:49:02] 2025-11-23 00:48:29,112 | INFO     | sum of square deviations: 113819303153.8493
[2025-11-22 19:49:02] 2025-11-23 00:48:29,122 | INFO     | sum of deviations: 851967567496.4723
[2025-11-22 19:49:02] 2025-11-23 00:48:29,123 | INFO     | mean x: 1763836367.1592178
[2025-11-22 19:49:02] 2025-11-23 00:48:29,123 | INFO     | mean y: 3262976.5572625697
[2025-11-22 19:49:02] 2025-11-23 00:48:29,123 | INFO     | intersect: -13199518428.273643
[2025-11-22 19:49:02] 2025-11-23 00:48:29,124 | INFO     | chi2: 0.073370840101602
[2025-11-22 19:49:02] 2025-11-23 00:48:29,124 | INFO     | current memory leak: 7.49 B/s (using 716 data points, chi2=0.07)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,124 | INFO     | could have reported an average CPU frequency of 2172 MHz (28 samples)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,124 | INFO     | ..............................
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . Timing measurements:
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . get job = 0 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . initial setup = 2 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . payload setup = 9 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . stage-in = 0 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . payload execution = 45555 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . stage-out = 3 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,125 | INFO     | . log creation = 0 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,126 | INFO     | ..............................
[2025-11-22 19:49:02] 2025-11-23 00:48:29,293 | INFO     | 
[2025-11-22 19:49:02] 2025-11-23 00:48:29,293 | INFO     | job summary report
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | --------------------------------------------------
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | PanDA job id: 6895325306
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | task id: 47556137
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | errors: (none)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:49:02] 2025-11-23 00:48:29,294 | INFO     | pilot state: finished 
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | transexitcode: 0
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | exeerrorcode: 0
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | exeerrordiag: 
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | exitcode: 0
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | exitmsg: OK
[2025-11-22 19:49:02] 2025-11-23 00:48:29,295 | INFO     | cpuconsumptiontime: 353380 s
[2025-11-22 19:49:02] 2025-11-23 00:48:29,296 | INFO     | nevents: 1000
[2025-11-22 19:49:02] 2025-11-23 00:48:29,296 | INFO     | neventsw: 0
[2025-11-22 19:49:02] 2025-11-23 00:48:29,296 | INFO     | pid: 7426
[2025-11-22 19:49:02] 2025-11-23 00:48:29,296 | INFO     | pgrp: 7426
[2025-11-22 19:49:02] 2025-11-23 00:48:29,296 | INFO     | corecount: 8
[2025-11-22 19:49:02] 2025-11-23 00:48:29,297 | INFO     | event service: False
[2025-11-22 19:49:02] 2025-11-23 00:48:29,297 | INFO     | sizes: {0: 2298581, 1: 2298780, 7: 2299042, 11: 2299070, 45569: 2345218, 45570: 2345217, 45575: 2354395, 45578: 2354451, 45585: 2354697}
[2025-11-22 19:49:02] 2025-11-23 00:48:29,297 | INFO     | --------------------------------------------------
[2025-11-22 19:49:02] 2025-11-23 00:48:29,297 | INFO     | 
[2025-11-22 19:49:02] 2025-11-23 00:48:29,297 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:49:02] 2025-11-23 00:48:29,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,330 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:49:02] 2025-11-23 00:48:29,334 | INFO     | job 6895325306 has completed (purged errors)
[2025-11-22 19:49:02] 2025-11-23 00:48:29,334 | INFO     | overall cleanup function is called
[2025-11-22 19:49:02] 2025-11-23 00:48:30,345 | INFO     | --- collectZombieJob: --- 10, [7426]
[2025-11-22 19:49:02] 2025-11-23 00:48:30,345 | INFO     | zombie collector waiting for pid 7426
[2025-11-22 19:49:02] 2025-11-23 00:48:30,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:49:02] 2025-11-23 00:48:30,346 | INFO     | collected zombie processes
[2025-11-22 19:49:02] 2025-11-23 00:48:30,346 | INFO     | will attempt to kill all subprocesses of pid=7426
[2025-11-22 19:49:02] 2025-11-23 00:48:30,439 | INFO     | process IDs to be killed: [7426] (in reverse order)
[2025-11-22 19:49:02] 2025-11-23 00:48:30,496 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:49:02] 2025-11-23 00:48:30,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:49:02] 2025-11-23 00:48:30,501 | INFO     | did not find any defunct processes belonging to 7426
[2025-11-22 19:49:02] 2025-11-23 00:48:30,505 | INFO     | did not find any defunct processes belonging to 7426
[2025-11-22 19:49:02] 2025-11-23 00:48:30,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:49:02] 2025-11-23 00:48:30,508 | INFO     | ready for new job
[2025-11-22 19:49:02] 2025-11-23 00:48:30,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:49:02] 2025-11-23 00:48:30,512 | INFO     | ***************************************
[2025-11-22 19:49:02] 2025-11-23 00:48:30,512 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:49:02] 2025-11-23 00:48:30,512 | INFO     | ***************************************
[2025-11-22 19:49:02] 2025-11-23 00:48:30,513 | INFO     | 
[2025-11-22 19:49:02] 2025-11-23 00:48:30,513 | INFO     | architecture information:
[2025-11-22 19:49:02] 2025-11-23 00:48:30,514 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:49:02] 2025-11-23 00:48:30,534 | INFO     | cat /etc/os-release:
[2025-11-22 19:49:02] NAME="CentOS Linux"
[2025-11-22 19:49:02] VERSION="7 (Core)"
[2025-11-22 19:49:02] ID="centos"
[2025-11-22 19:49:02] ID_LIKE="rhel fedora"
[2025-11-22 19:49:02] VERSION_ID="7"
[2025-11-22 19:49:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:49:02] ANSI_COLOR="0;31"
[2025-11-22 19:49:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:49:02] HOME_URL="https://www.centos.org/"
[2025-11-22 19:49:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:49:02] 
[2025-11-22 19:49:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:49:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:49:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:49:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:49:02] 
[2025-11-22 19:49:02] 2025-11-23 00:48:30,534 | INFO     | ***************************************
[2025-11-22 19:49:02] 2025-11-23 00:48:31,036 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:49:02] 2025-11-23 00:48:31,057 | INFO     | sufficient remaining disk space (17465081856 B)
[2025-11-22 19:49:02] 2025-11-23 00:48:31,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:49:02] 2025-11-23 00:48:31,058 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:49:02] 2025-11-23 00:48:31,058 | INFO     | update_server=False
[2025-11-22 19:49:02] 2025-11-23 00:48:31,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:49:02] 2025-11-23 00:48:31,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:49:02] 2025-11-23 00:48:31,153 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 19:49:02] 2025-11-23 00:48:31,153 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 19:49:02] 2025-11-23 00:48:31,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:49:02] 2025-11-23 00:48:31,160 | INFO     | will abort loop
[2025-11-22 19:49:02] 2025-11-23 00:48:31,206 | INFO     | all payload control threads have been joined
[2025-11-22 19:49:02] 2025-11-23 00:48:31,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:49:02] 2025-11-23 00:48:31,966 | INFO     | all data control threads have been joined
[2025-11-22 19:49:02] 2025-11-23 00:48:32,063 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,064 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,072 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,101 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,113 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,166 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,212 | INFO     | [payload] control thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:49:02] 2025-11-23 00:48:32,505 | INFO     | all job control threads have been joined
[2025-11-22 19:49:02] 2025-11-23 00:48:32,572 | INFO     | [job] validate thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,817 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:32,971 | INFO     | [data] control thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:33,269 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:33,345 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:33,510 | INFO     | [job] control thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:33,607 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:36,431 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:49:02] 2025-11-23 00:48:42,246 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:49:02] 2025-11-23 00:48:43,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159667300160)>', '<ExcThread(monitor, started 140158926051072)>']
[2025-11-22 19:49:02] 2025-11-23 00:48:48,886 | INFO     | all workflow threads have been joined
[2025-11-22 19:49:02] 2025-11-23 00:48:48,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:49:02] 2025-11-23 00:48:48,893 | INFO     | traces error code: 0
[2025-11-22 19:49:02] 2025-11-23 00:48:48,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:49:02] 2025-11-23 00:49:02,136 | INFO     | PID=888 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-22 19:49:02] 2025-11-23 00:49:02,137 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:49:02] 2025-11-23 00:49:02,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:49:02] 2025-11-23 00:49:02,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:49:02] 2025-11-23 00:49:02,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:49:02] 2025-11-23 00:49:02,137 | INFO     | [monitor] control thread has ended
[2025-11-22 19:49:02] 2025-11-23 00:49:02,242 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:49:02] 2025-11-23 00:49:02,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:49:02] 2025-11-23 00:49:02,252 [wrapper] pilotpid: 888
[2025-11-22 19:49:02] 2025-11-23 00:49:02,257 [wrapper] Pilot exit status: 0
[2025-11-22 19:49:02] 2025-11-23 00:49:02,273 [wrapper] pandaids: 6895325306
[2025-11-22 19:49:02] 2025-11-23 00:49:02,316 [wrapper] cleanup supervisor_pilot 15440 889
[2025-11-22 19:49:02] 2025-11-23 00:49:02,320 [wrapper] Test setup, not cleaning
[2025-11-22 19:49:02] 2025-11-23 00:49:02,325 [wrapper] apfmon messages muted
[2025-11-22 19:49:02] 2025-11-23 00:49:02,329 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:49:02] 2025-11-23 00:49:02,334 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:49:02]  *** Error codes and diagnostics ***
[2025-11-22 19:49:02]     "exeErrorCode": 0,
[2025-11-22 19:49:02]     "exeErrorDiag": "",
[2025-11-22 19:49:02]     "pilotErrorCode": 0,
[2025-11-22 19:49:02]     "pilotErrorDiag": "",
[2025-11-22 19:49:02]  *** Listing of results directory ***
[2025-11-22 19:49:02] total 1316396
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-22 19:49:02] -rwx------ 1 boincer umatlas     36292 Nov 21 09:39 runpilot2-wrapper.sh
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 09:39 queuedata.json
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas       100 Nov 22 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:49:02] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 07:08 run_atlas
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas       105 Nov 22 07:08 job.xml
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas 411501564 Nov 22 07:08 EVNT.47483658._000030.pool.root.1
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:08 start_atlas.sh
[2025-11-22 19:49:02] drwxrwx--x 2 boincer umatlas      4096 Nov 22 07:08 shared
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 07:08 input.tar.gz
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas         0 Nov 22 07:08 boinc_lockfile
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas      2783 Nov 22 07:08 pandaJob.out
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas        57 Nov 22 07:08 setup.sh.local
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas    989768 Nov 22 07:08 agis_schedconf.cvmfs.json
[2025-11-22 19:49:02] drwx------ 5 boincer umatlas      4096 Nov 22 07:08 pilot3
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas       532 Nov 22 19:37 boinc_task_state.xml
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 19:37 init_data.xml
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas 915979442 Nov 22 19:47 HITS.47556137._000298.pool.root.1
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas      1060 Nov 22 19:48 memory_monitor_summary.json
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas   1526164 Nov 22 19:48 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas   2001524 Nov 22 19:48 log.47556137._000298.job.log.tgz.1
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas      8658 Nov 22 19:48 heartbeat.json
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 19:48 boinc_mmap_file
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas        29 Nov 22 19:48 wrapper_checkpoint.txt
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas        95 Nov 22 19:49 pilot_heartbeat.json
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas       743 Nov 22 19:49 pilotlog.txt
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas   6289636 Nov 22 19:49 log.47556137._000298.job.log.1
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas       353 Nov 22 19:49 output.list
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas       620 Nov 22 19:49 runtime_log
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas   8314880 Nov 22 19:49 result.tar.gz
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 19:49 runtime_log.err
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas       668 Nov 22 19:49 0VBLDmFThg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgUJKDmoWJian.diag
[2025-11-22 19:49:02] -rw-r--r-- 1 boincer umatlas     21303 Nov 22 19:49 stderr.txt
[2025-11-22 19:49:02] HITS file was successfully produced:
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas 915979442 Nov 22 19:47 shared/HITS.pool.root.1
[2025-11-22 19:49:02]  *** Contents of shared directory: ***
[2025-11-22 19:49:02] total 1305096
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas 411501564 Nov 22 07:08 ATLAS.root_0
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:08 start_atlas.sh
[2025-11-22 19:49:02] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 07:08 input.tar.gz
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas 915979442 Nov 22 19:47 HITS.pool.root.1
[2025-11-22 19:49:02] -rw------- 1 boincer umatlas   8314880 Nov 22 19:49 result.tar.gz
19:49:04 (29652): run_atlas exited; CPU time 351140.104054
19:49:04 (29652): called boinc_finish(0)

</stderr_txt>
]]>

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