Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:44:31 (642452): wrapper (7.7.26015): starting
06:44:31 (642452): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:44:31] Arguments: --nthreads 4
[2025-11-22 06:44:31] Threads: 4
[2025-11-22 06:44:31] Checking for CVMFS
[2025-11-22 06:44:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:44:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:44:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:44:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:44:31] 2.13.2.0 489841 5 49676 153170 2 89 2506965 4096001 5970 130560 0 413452 99.216 277522 2121 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:44:31] CVMFS is ok
[2025-11-22 06:44:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:44:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:44:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:44:31] Further information can be found at the LHC@home message board.
[2025-11-22 06:44:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:44:31] Checking for apptainer binary...
[2025-11-22 06:44:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:44:31] Running /usr/bin/apptainer --version
[2025-11-22 06:44:31] apptainer version 1.4.3
[2025-11-22 06:44:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:44:31] SETI64-Ubuntu
[2025-11-22 06:44:31] apptainer works
[2025-11-22 06:44:31] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:44:31] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:44:31] Starting ATLAS job with PandaID=6895325326
[2025-11-22 06:44:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:02:52]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:02:52] 2025-11-22 20:02:16,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:02:52] 2025-11-22 20:02:16,883 | INFO     | time since job start (29855s) is within the limit (172800.0s)
[2025-11-22 15:02:52] 2025-11-22 20:02:18,888 | INFO     | time since job start (29857s) is within the limit (172800.0s)
[2025-11-22 15:02:52] 2025-11-22 20:02:18,975 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:02:52] 2025-11-22 20:02:18,988 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 1852.0142109374997
[2025-11-22 15:02:52] 2025-11-22 20:02:19,002 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/24/PanDA_Pilot-6895325326/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,003 | INFO     | extracted standard info from prmon json
[2025-11-22 15:02:52] 2025-11-22 20:02:19,003 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:02:52] 2025-11-22 20:02:19,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:02:52] 2025-11-22 20:02:19,008 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:02:52] 2025-11-22 20:02:19,008 | INFO     | sum of square deviations: 36257944940.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,011 | INFO     | sum of deviations: 150389936860.9999
[2025-11-22 15:02:52] 2025-11-22 20:02:19,011 | INFO     | mean x: 1763826788.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,012 | INFO     | mean y: 2233679.124744376
[2025-11-22 15:02:52] 2025-11-22 20:02:19,012 | INFO     | intersect: -7313729752.338845
[2025-11-22 15:02:52] 2025-11-22 20:02:19,012 | INFO     | chi2: 4.634233464615778
[2025-11-22 15:02:52] 2025-11-22 20:02:19,012 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | sum of deviations: 271780869154.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | mean x: 1763826635.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | mean y: 2250501.138429752
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | intersect: -13632968721.948265
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | chi2: 1.8384600859278457
[2025-11-22 15:02:52] 2025-11-22 20:02:19,016 | INFO     | current chi2=1.8384600859278457 (change=60.32871239730967 %)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,017 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | sum of deviations: 277752722215.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | mean x: 1763826483.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | mean y: 2251334.354906054
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | intersect: -14373518531.13346
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | chi2: 1.7646668788280677
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | current chi2=1.7646668788280677 (change=4.013859624400579 %)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,020 | INFO     | right removable region: 478
[2025-11-22 15:02:52] 2025-11-22 20:02:19,021 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,024 | INFO     | sum of deviations: 69547201812.49997
[2025-11-22 15:02:52] 2025-11-22 20:02:19,024 | INFO     | mean x: 1763826940.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,024 | INFO     | mean y: 2244834.9194214875
[2025-11-22 15:02:52] 2025-11-22 20:02:19,024 | INFO     | intersect: -3486931978.716662
[2025-11-22 15:02:52] 2025-11-22 20:02:19,025 | INFO     | chi2: 2.9585873207442246
[2025-11-22 15:02:52] 2025-11-22 20:02:19,025 | INFO     | current chi2=2.9585873207442246 (change=36.158000166926854 %)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,025 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,028 | INFO     | sum of deviations: 55432657489.99992
[2025-11-22 15:02:52] 2025-11-22 20:02:19,028 | INFO     | mean x: 1763827093.0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,028 | INFO     | mean y: 2246830.014613779
[2025-11-22 15:02:52] 2025-11-22 20:02:19,028 | INFO     | intersect: -2866806608.4121222
[2025-11-22 15:02:52] 2025-11-22 20:02:19,029 | INFO     | chi2: 2.938633222072438
[2025-11-22 15:02:52] 2025-11-22 20:02:19,029 | INFO     | current chi2=2.938633222072438 (change=0.6744468392694641 %)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,029 | INFO     | left removable region: 20
[2025-11-22 15:02:52] 2025-11-22 20:02:19,029 | INFO     | sum of square deviations: 29790156694.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,032 | INFO     | sum of deviations: 158407607311.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,032 | INFO     | mean x: 1763827062.5
[2025-11-22 15:02:52] 2025-11-22 20:02:19,032 | INFO     | mean y: 2268529.3427947597
[2025-11-22 15:02:52] 2025-11-22 20:02:19,032 | INFO     | intersect: -9376790048.535763
[2025-11-22 15:02:52] 2025-11-22 20:02:19,032 | INFO     | chi2: 0.03114309191325192
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | current memory leak: 5.32 B/s (using 458 data points, chi2=0.03)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | could have reported an average CPU frequency of 2283 MHz (20 samples)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | ..............................
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . Timing measurements:
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . get job = 0 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . initial setup = 3 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . payload setup = 4 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . stage-in = 0 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . payload execution = 29823 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . stage-out = 4 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | . log creation = 0 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,033 | INFO     | ..............................
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | 
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | job summary report
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | --------------------------------------------------
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | PanDA job id: 6895325326
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | task id: 47556137
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | errors: (none)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | pilot state: finished 
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | transexitcode: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | exeerrorcode: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | exeerrordiag: 
[2025-11-22 15:02:52] 2025-11-22 20:02:19,196 | INFO     | exitcode: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | exitmsg: OK
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | cpuconsumptiontime: 117818 s
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | nevents: 1000
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | neventsw: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | pid: 670075
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | pgrp: 670075
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | corecount: 4
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | event service: False
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | sizes: {0: 2298818, 4: 2299080, 11: 2299108, 29831: 2338051, 29837: 2347075, 29839: 2347131, 29843: 2347505}
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | --------------------------------------------------
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | 
[2025-11-22 15:02:52] 2025-11-22 20:02:19,197 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/24
[2025-11-22 15:02:52] 2025-11-22 20:02:19,213 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,213 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,213 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,213 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | job 6895325326 has completed (purged errors)
[2025-11-22 15:02:52] 2025-11-22 20:02:19,214 | INFO     | overall cleanup function is called
[2025-11-22 15:02:52] 2025-11-22 20:02:20,225 | INFO     | --- collectZombieJob: --- 10, [670075]
[2025-11-22 15:02:52] 2025-11-22 20:02:20,225 | INFO     | zombie collector waiting for pid 670075
[2025-11-22 15:02:52] 2025-11-22 20:02:20,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:02:52] 2025-11-22 20:02:20,225 | INFO     | collected zombie processes
[2025-11-22 15:02:52] 2025-11-22 20:02:20,226 | INFO     | will attempt to kill all subprocesses of pid=670075
[2025-11-22 15:02:52] 2025-11-22 20:02:20,503 | INFO     | process IDs to be killed: [670075] (in reverse order)
[2025-11-22 15:02:52] 2025-11-22 20:02:20,589 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:02:52] 2025-11-22 20:02:20,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:02:52] 2025-11-22 20:02:20,597 | INFO     | did not find any defunct processes belonging to 670075
[2025-11-22 15:02:52] 2025-11-22 20:02:20,605 | INFO     | did not find any defunct processes belonging to 670075
[2025-11-22 15:02:52] 2025-11-22 20:02:20,606 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:02:52] 2025-11-22 20:02:20,606 | INFO     | ready for new job
[2025-11-22 15:02:52] 2025-11-22 20:02:20,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:02:52] 2025-11-22 20:02:20,608 | INFO     | ***************************************
[2025-11-22 15:02:52] 2025-11-22 20:02:20,608 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:02:52] 2025-11-22 20:02:20,608 | INFO     | ***************************************
[2025-11-22 15:02:52] 2025-11-22 20:02:20,608 | INFO     | 
[2025-11-22 15:02:52] 2025-11-22 20:02:20,613 | INFO     | architecture information:
[2025-11-22 15:02:52] 2025-11-22 20:02:20,613 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:02:52] 2025-11-22 20:02:20,625 | INFO     | cat /etc/os-release:
[2025-11-22 15:02:52] NAME="CentOS Linux"
[2025-11-22 15:02:52] VERSION="7 (Core)"
[2025-11-22 15:02:52] ID="centos"
[2025-11-22 15:02:52] ID_LIKE="rhel fedora"
[2025-11-22 15:02:52] VERSION_ID="7"
[2025-11-22 15:02:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:02:52] ANSI_COLOR="0;31"
[2025-11-22 15:02:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:02:52] HOME_URL="https://www.centos.org/"
[2025-11-22 15:02:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:02:52] 
[2025-11-22 15:02:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:02:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:02:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:02:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:02:52] 
[2025-11-22 15:02:52] 2025-11-22 20:02:20,625 | INFO     | ***************************************
[2025-11-22 15:02:52] 2025-11-22 20:02:21,128 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/24
[2025-11-22 15:02:52] 2025-11-22 20:02:21,139 | INFO     | sufficient remaining disk space (367535325184 B)
[2025-11-22 15:02:52] 2025-11-22 20:02:21,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:02:52] 2025-11-22 20:02:21,139 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:02:52] 2025-11-22 20:02:21,139 | INFO     | update_server=False
[2025-11-22 15:02:52] 2025-11-22 20:02:21,139 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:02:52] 2025-11-22 20:02:21,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:02:52] 2025-11-22 20:02:21,140 | INFO     | aborting loop
[2025-11-22 15:02:52] 2025-11-22 20:02:21,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:02:52] 2025-11-22 20:02:21,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:02:52] 2025-11-22 20:02:21,529 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:02:52] 2025-11-22 20:02:21,656 | INFO     | all data control threads have been joined
[2025-11-22 15:02:52] 2025-11-22 20:02:22,145 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,145 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,206 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,439 | INFO     | all job control threads have been joined
[2025-11-22 15:02:52] 2025-11-22 20:02:22,512 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,631 | INFO     | all payload control threads have been joined
[2025-11-22 15:02:52] 2025-11-22 20:02:22,661 | INFO     | [data] control thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,756 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:22,985 | INFO     | [job] validate thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,063 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,146 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,346 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,405 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,444 | INFO     | [job] control thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:23,637 | INFO     | [payload] control thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:24,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:02:52] 2025-11-22 20:02:25,093 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:25,146 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:02:52] 2025-11-22 20:02:25,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137327522297664)>', '<ExcThread(monitor, started 137326806165248)>']
[2025-11-22 15:02:52] 2025-11-22 20:02:30,902 | INFO     | all workflow threads have been joined
[2025-11-22 15:02:52] 2025-11-22 20:02:30,903 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:02:52] 2025-11-22 20:02:30,903 | INFO     | traces error code: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:30,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:02:52] 2025-11-22 20:02:52,292 | INFO     | PID=648976 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 15:02:52] 2025-11-22 20:02:52,292 | INFO     | .. there are 7 such processes running
[2025-11-22 15:02:52] 2025-11-22 20:02:52,293 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:02:52] 2025-11-22 20:02:52,293 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:02:52] 2025-11-22 20:02:52,293 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:02:52] 2025-11-22 20:02:52,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:02:52] 2025-11-22 20:02:52,293 | INFO     | [monitor] control thread has ended
[2025-11-22 15:02:52] 2025-11-22 20:02:52,371 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:02:52] 2025-11-22 20:02:52,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:02:52] 2025-11-22 20:02:52,377 [wrapper] pilotpid: 648976
[2025-11-22 15:02:52] 2025-11-22 20:02:52,380 [wrapper] Pilot exit status: 0
[2025-11-22 15:02:52] 2025-11-22 20:02:52,389 [wrapper] pandaids: 6895325326
[2025-11-22 15:02:52] 2025-11-22 20:02:52,451 [wrapper] cleanup supervisor_pilot 1188367 648977
[2025-11-22 15:02:52] 2025-11-22 20:02:52,453 [wrapper] Test setup, not cleaning
[2025-11-22 15:02:52] 2025-11-22 20:02:52,456 [wrapper] apfmon messages muted
[2025-11-22 15:02:52] 2025-11-22 20:02:52,459 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:02:52] 2025-11-22 20:02:52,461 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:02:52]  *** Error codes and diagnostics ***
[2025-11-22 15:02:52]     "exeErrorCode": 0,
[2025-11-22 15:02:52]     "exeErrorDiag": "",
[2025-11-22 15:02:52]     "pilotErrorCode": 0,
[2025-11-22 15:02:52]     "pilotErrorDiag": "",
[2025-11-22 15:02:52]  *** Listing of results directory ***
[2025-11-22 15:02:52] total 1309628
[2025-11-22 15:02:52] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-22 15:02:52] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:40 runpilot2-wrapper.sh
[2025-11-22 15:02:52] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:40 queuedata.json
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:02:52] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:44 run_atlas
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:44 job.xml
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd 408891296 Nov 22 06:44 EVNT.47483658._000032.pool.root.1
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:44 start_atlas.sh
[2025-11-22 15:02:52] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:44 shared
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 06:44 input.tar.gz
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:44 init_data.xml
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:44 boinc_setup_complete
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:44 boinc_lockfile
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 22 06:44 pandaJob.out
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:44 agis_schedconf.cvmfs.json
[2025-11-22 15:02:52] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:44 pilot3
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd       530 Nov 22 14:54 boinc_task_state.xml
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd 917109195 Nov 22 15:01 HITS.47556137._000318.pool.root.1
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd      1043 Nov 22 15:02 memory_monitor_summary.json
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 15:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd   1325699 Nov 22 15:02 log.47556137._000318.job.log.tgz.1
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd      8584 Nov 22 15:02 heartbeat.json
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 15:02 boinc_mmap_file
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd        28 Nov 22 15:02 wrapper_checkpoint.txt
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd       821 Nov 22 15:02 pilotlog.txt
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd        95 Nov 22 15:02 pilot_heartbeat.json
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd   4242023 Nov 22 15:02 log.47556137._000318.job.log.1
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd       353 Nov 22 15:02 output.list
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 15:02 runtime_log
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd   5591040 Nov 22 15:02 result.tar.gz
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 15:02 runtime_log.err
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd       661 Nov 22 15:02 QwuKDmwUhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpUJKDmUsvpRn.diag
[2025-11-22 15:02:52] -rw-rw-r-- 1 whitlerd whitlerd     21349 Nov 22 15:02 stderr.txt
[2025-11-22 15:02:52] HITS file was successfully produced:
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd 917109195 Nov 22 15:01 shared/HITS.pool.root.1
[2025-11-22 15:02:52]  *** Contents of shared directory: ***
[2025-11-22 15:02:52] total 1300988
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd 408891296 Nov 22 06:44 ATLAS.root_0
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:44 start_atlas.sh
[2025-11-22 15:02:52] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 06:44 input.tar.gz
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd 917109195 Nov 22 15:01 HITS.pool.root.1
[2025-11-22 15:02:52] -rw------- 1 whitlerd whitlerd   5591040 Nov 22 15:02 result.tar.gz
15:02:53 (642452): run_atlas exited; CPU time 118539.426252
15:02:53 (642452): called boinc_finish(0)

</stderr_txt>
]]>

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