Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
14:57:31 (1142720): wrapper (7.7.26015): starting
14:57:31 (1142720): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 14:57:31] Arguments: --nthreads 4
[2025-11-22 14:57:31] Threads: 4
[2025-11-22 14:57:31] Checking for CVMFS
[2025-11-22 14:57:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:57:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:57:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:57:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:57:32] 2.13.2.0 489841 498 68760 153183 1 81 2618656 4096000 3307 130560 0 1742395 99.710 308253 1398 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 14:57:32] CVMFS is ok
[2025-11-22 14:57:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:57:32] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 14:57:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 14:57:32] Further information can be found at the LHC@home message board.
[2025-11-22 14:57:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:57:32] Checking for apptainer binary...
[2025-11-22 14:57:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:57:32] Running /usr/bin/apptainer --version
[2025-11-22 14:57:32] apptainer version 1.4.3
[2025-11-22 14:57:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:57:32] SETI64-Ubuntu
[2025-11-22 14:57:32] apptainer works
[2025-11-22 14:57:32] Set ATHENA_PROC_NUMBER=4
[2025-11-22 14:57:32] Set ATHENA_CORE_NUMBER=4
[2025-11-22 14:57:32] Starting ATLAS job with PandaID=6895325329
[2025-11-22 14:57:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:13:51]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:13:51] 2025-11-23 05:13:17,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,448 | INFO     | time since job start (33335s) is within the limit (172800.0s)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,899 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 00:13:51] 2025-11-23 05:13:17,912 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2365.530617187501
[2025-11-23 00:13:51] 2025-11-23 05:13:17,927 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-6895325329/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,928 | INFO     | extracted standard info from prmon json
[2025-11-23 00:13:51] 2025-11-23 05:13:17,928 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:13:51] 2025-11-23 05:13:17,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:13:51] 2025-11-23 05:13:17,934 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:13:51] 2025-11-23 05:13:17,934 | INFO     | sum of square deviations: 50472509132.5
[2025-11-23 00:13:51] 2025-11-23 05:13:17,938 | INFO     | sum of deviations: 446332929744.49994
[2025-11-23 00:13:51] 2025-11-23 05:13:17,939 | INFO     | mean x: 1763858108.5
[2025-11-23 00:13:51] 2025-11-23 05:13:17,939 | INFO     | mean y: 2238212.141025641
[2025-11-23 00:13:51] 2025-11-23 05:13:17,939 | INFO     | intersect: -15595717402.7397
[2025-11-23 00:13:51] 2025-11-23 05:13:17,939 | INFO     | chi2: 5.797166064826356
[2025-11-23 00:13:51] 2025-11-23 05:13:17,940 | INFO     | sum of square deviations: 49098557790.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,944 | INFO     | sum of deviations: 508188725187.99994
[2025-11-23 00:13:51] 2025-11-23 05:13:17,944 | INFO     | mean x: 1763857956.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,944 | INFO     | mean y: 2245046.9722735677
[2025-11-23 00:13:51] 2025-11-23 05:13:17,944 | INFO     | intersect: -18254354869.99957
[2025-11-23 00:13:51] 2025-11-23 05:13:17,944 | INFO     | chi2: 4.6727671425166335
[2025-11-23 00:13:51] 2025-11-23 05:13:17,945 | INFO     | current chi2=4.6727671425166335 (change=19.39566522221753 %)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,945 | INFO     | right removable region: 540
[2025-11-23 00:13:51] 2025-11-23 05:13:17,945 | INFO     | sum of square deviations: 49098557790.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,949 | INFO     | sum of deviations: 306277832575.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,949 | INFO     | mean x: 1763858261.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,949 | INFO     | mean y: 2253747.7634011093
[2025-11-23 00:13:51] 2025-11-23 05:13:17,950 | INFO     | intersect: -11000731053.933126
[2025-11-23 00:13:51] 2025-11-23 05:13:17,950 | INFO     | chi2: 2.882071717202835
[2025-11-23 00:13:51] 2025-11-23 05:13:17,950 | INFO     | current chi2=2.882071717202835 (change=50.28481701275599 %)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,950 | INFO     | sum of square deviations: 47749769710.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | sum of deviations: 197520183037.50003
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | mean x: 1763858413.5
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | mean y: 2266039.005597015
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | intersect: -7294054734.951794
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | chi2: 1.2375894131129073
[2025-11-23 00:13:51] 2025-11-23 05:13:17,955 | INFO     | current chi2=1.2375894131129073 (change=57.05903480035407 %)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,956 | INFO     | sum of square deviations: 46425912330.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,960 | INFO     | sum of deviations: 178441880712.99988
[2025-11-23 00:13:51] 2025-11-23 05:13:17,960 | INFO     | mean x: 1763858566.0
[2025-11-23 00:13:51] 2025-11-23 05:13:17,960 | INFO     | mean y: 2268234.1487758947
[2025-11-23 00:13:51] 2025-11-23 05:13:17,960 | INFO     | intersect: -6777269830.53216
[2025-11-23 00:13:51] 2025-11-23 05:13:17,961 | INFO     | chi2: 1.2084442648199076
[2025-11-23 00:13:51] 2025-11-23 05:13:17,961 | INFO     | current chi2=1.2084442648199076 (change=2.3549933430418473 %)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,961 | INFO     | left removable region: 30
[2025-11-23 00:13:51] 2025-11-23 05:13:17,961 | INFO     | sum of square deviations: 41132706107.5
[2025-11-23 00:13:51] 2025-11-23 05:13:17,965 | INFO     | sum of deviations: 199620700835.49988
[2025-11-23 00:13:51] 2025-11-23 05:13:17,965 | INFO     | mean x: 1763858840.5
[2025-11-23 00:13:51] 2025-11-23 05:13:17,965 | INFO     | mean y: 2280402.7666666666
[2025-11-23 00:13:51] 2025-11-23 05:13:17,965 | INFO     | intersect: -8557884274.832821
[2025-11-23 00:13:51] 2025-11-23 05:13:17,966 | INFO     | chi2: 0.042535213065813066
[2025-11-23 00:13:51] 2025-11-23 05:13:17,966 | INFO     | current memory leak: 4.85 B/s (using 510 data points, chi2=0.04)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,966 | INFO     | could have reported an average CPU frequency of 2364 MHz (22 samples)
[2025-11-23 00:13:51] 2025-11-23 05:13:17,966 | INFO     | ..............................
[2025-11-23 00:13:51] 2025-11-23 05:13:17,966 | INFO     | . Timing measurements:
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . get job = 0 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . initial setup = 3 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . payload setup = 5 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . stage-in = 0 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . payload execution = 33304 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . stage-out = 3 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | . log creation = 0 s
[2025-11-23 00:13:51] 2025-11-23 05:13:17,967 | INFO     | ..............................
[2025-11-23 00:13:51] 2025-11-23 05:13:18,016 | INFO     | 
[2025-11-23 00:13:51] 2025-11-23 05:13:18,016 | INFO     | job summary report
[2025-11-23 00:13:51] 2025-11-23 05:13:18,016 | INFO     | --------------------------------------------------
[2025-11-23 00:13:51] 2025-11-23 05:13:18,016 | INFO     | PanDA job id: 6895325329
[2025-11-23 00:13:51] 2025-11-23 05:13:18,016 | INFO     | task id: 47556137
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | errors: (none)
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | pilot state: finished 
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | transexitcode: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | exeerrorcode: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | exeerrordiag: 
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | exitcode: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | exitmsg: OK
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | cpuconsumptiontime: 130815 s
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | nevents: 1000
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | neventsw: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | pid: 1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | pgrp: 1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:18,017 | INFO     | corecount: 4
[2025-11-23 00:13:51] 2025-11-23 05:13:18,018 | INFO     | event service: False
[2025-11-23 00:13:51] 2025-11-23 05:13:18,018 | INFO     | sizes: {0: 2298640, 1: 2298839, 4: 2299101, 11: 2299129, 33312: 2339529, 33316: 2348735, 33320: 2348925}
[2025-11-23 00:13:51] 2025-11-23 05:13:18,018 | INFO     | --------------------------------------------------
[2025-11-23 00:13:51] 2025-11-23 05:13:18,018 | INFO     | 
[2025-11-23 00:13:51] 2025-11-23 05:13:18,018 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/4
[2025-11-23 00:13:51] 2025-11-23 05:13:18,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | job 6895325329 has completed (purged errors)
[2025-11-23 00:13:51] 2025-11-23 05:13:18,037 | INFO     | overall cleanup function is called
[2025-11-23 00:13:51] 2025-11-23 05:13:19,051 | INFO     | --- collectZombieJob: --- 10, [1165761]
[2025-11-23 00:13:51] 2025-11-23 05:13:19,051 | INFO     | zombie collector waiting for pid 1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:19,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:13:51] 2025-11-23 05:13:19,051 | INFO     | collected zombie processes
[2025-11-23 00:13:51] 2025-11-23 05:13:19,051 | INFO     | will attempt to kill all subprocesses of pid=1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:19,381 | INFO     | process IDs to be killed: [1165761] (in reverse order)
[2025-11-23 00:13:51] 2025-11-23 05:13:19,468 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:13:51] 2025-11-23 05:13:19,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:13:51] 2025-11-23 05:13:19,476 | INFO     | did not find any defunct processes belonging to 1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:19,482 | INFO     | did not find any defunct processes belonging to 1165761
[2025-11-23 00:13:51] 2025-11-23 05:13:19,483 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:13:51] 2025-11-23 05:13:19,483 | INFO     | ready for new job
[2025-11-23 00:13:51] 2025-11-23 05:13:19,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:13:51] 2025-11-23 05:13:19,486 | INFO     | ***************************************
[2025-11-23 00:13:51] 2025-11-23 05:13:19,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:13:51] 2025-11-23 05:13:19,486 | INFO     | ***************************************
[2025-11-23 00:13:51] 2025-11-23 05:13:19,486 | INFO     | 
[2025-11-23 00:13:51] 2025-11-23 05:13:19,490 | INFO     | architecture information:
[2025-11-23 00:13:51] 2025-11-23 05:13:19,491 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:13:51] 2025-11-23 05:13:19,502 | INFO     | cat /etc/os-release:
[2025-11-23 00:13:51] NAME="CentOS Linux"
[2025-11-23 00:13:51] VERSION="7 (Core)"
[2025-11-23 00:13:51] ID="centos"
[2025-11-23 00:13:51] ID_LIKE="rhel fedora"
[2025-11-23 00:13:51] VERSION_ID="7"
[2025-11-23 00:13:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:13:51] ANSI_COLOR="0;31"
[2025-11-23 00:13:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:13:51] HOME_URL="https://www.centos.org/"
[2025-11-23 00:13:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:13:51] 
[2025-11-23 00:13:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:13:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:13:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:13:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:13:51] 
[2025-11-23 00:13:51] 2025-11-23 05:13:19,502 | INFO     | ***************************************
[2025-11-23 00:13:51] 2025-11-23 05:13:20,004 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/4
[2025-11-23 00:13:51] 2025-11-23 05:13:20,019 | INFO     | sufficient remaining disk space (372840071168 B)
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | INFO     | update_server=False
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:13:51] 2025-11-23 05:13:20,020 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:13:51] 2025-11-23 05:13:20,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:13:51] 2025-11-23 05:13:20,053 | INFO     | all data control threads have been joined
[2025-11-23 00:13:51] 2025-11-23 05:13:20,446 | INFO     | all job control threads have been joined
[2025-11-23 00:13:51] 2025-11-23 05:13:20,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:13:51] 2025-11-23 05:13:20,610 | INFO     | aborting loop
[2025-11-23 00:13:51] 2025-11-23 05:13:20,972 | INFO     | all payload control threads have been joined
[2025-11-23 00:13:51] 2025-11-23 05:13:21,025 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,026 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,059 | INFO     | [data] control thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,099 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,451 | INFO     | [job] control thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,452 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,615 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:21,978 | INFO     | [payload] control thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,002 | INFO     | [job] validate thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,023 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,062 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,218 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,331 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:22,560 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:24,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:27,627 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:13:51] 2025-11-23 05:13:30,980 | INFO     | job.realtimelogging is not enabled
[2025-11-23 00:13:51] 2025-11-23 05:13:31,985 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:13:51] 2025-11-23 05:13:32,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132444497741632)>', '<ExcThread(monitor, started 132443487065856)>']
[2025-11-23 00:13:51] 2025-11-23 05:13:37,911 | INFO     | all workflow threads have been joined
[2025-11-23 00:13:51] 2025-11-23 05:13:37,911 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:13:51] 2025-11-23 05:13:37,911 | INFO     | traces error code: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:37,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:13:51] 2025-11-23 05:13:50,901 | INFO     | PID=1151191 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 00:13:51] 2025-11-23 05:13:50,901 | INFO     | .. there are 6 such processes running
[2025-11-23 00:13:51] 2025-11-23 05:13:50,902 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:13:51] 2025-11-23 05:13:50,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:13:51] 2025-11-23 05:13:50,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:13:51] 2025-11-23 05:13:50,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:13:51] 2025-11-23 05:13:50,902 | INFO     | [monitor] control thread has ended
[2025-11-23 00:13:51] 2025-11-23 05:13:50,994 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:13:51] 2025-11-23 05:13:50,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:13:51] 2025-11-23 05:13:50,998 [wrapper] pilotpid: 1151191
[2025-11-23 00:13:51] 2025-11-23 05:13:51,001 [wrapper] Pilot exit status: 0
[2025-11-23 00:13:51] 2025-11-23 05:13:51,010 [wrapper] pandaids: 6895325329
[2025-11-23 00:13:51] 2025-11-23 05:13:51,079 [wrapper] cleanup supervisor_pilot 1743671 1151193
[2025-11-23 00:13:51] 2025-11-23 05:13:51,081 [wrapper] Test setup, not cleaning
[2025-11-23 00:13:51] 2025-11-23 05:13:51,084 [wrapper] apfmon messages muted
[2025-11-23 00:13:51] 2025-11-23 05:13:51,086 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:13:51] 2025-11-23 05:13:51,088 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:13:51]  *** Error codes and diagnostics ***
[2025-11-23 00:13:51]     "exeErrorCode": 0,
[2025-11-23 00:13:51]     "exeErrorDiag": "",
[2025-11-23 00:13:51]     "pilotErrorCode": 0,
[2025-11-23 00:13:51]     "pilotErrorDiag": "",
[2025-11-23 00:13:51]  *** Listing of results directory ***
[2025-11-23 00:13:51] total 1320980
[2025-11-23 00:13:51] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-23 00:13:51] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:40 runpilot2-wrapper.sh
[2025-11-23 00:13:51] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:40 queuedata.json
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:13:51] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 14:57 run_atlas
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 14:57 job.xml
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd 410312737 Nov 22 14:57 EVNT.47483658._000033.pool.root.1
[2025-11-23 00:13:51] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 14:57 shared
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd    590098 Nov 22 14:57 input.tar.gz
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 14:57 start_atlas.sh
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 14:57 init_data.xml
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 14:57 boinc_setup_complete
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 14:57 boinc_lockfile
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd      2781 Nov 22 14:57 pandaJob.out
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd    989768 Nov 22 14:57 agis_schedconf.cvmfs.json
[2025-11-23 00:13:51] drwx------ 5 whitlerd whitlerd      4096 Nov 22 14:57 pilot3
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 23 00:08 boinc_task_state.xml
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd 926325699 Nov 23 00:12 HITS.47556137._000321.pool.root.1
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd      1053 Nov 23 00:13 memory_monitor_summary.json
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 00:13 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd   1361450 Nov 23 00:13 log.47556137._000321.job.log.tgz.1
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd      8568 Nov 23 00:13 heartbeat.json
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 00:13 wrapper_checkpoint.txt
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 00:13 boinc_mmap_file
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd        95 Nov 23 00:13 pilot_heartbeat.json
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd       822 Nov 23 00:13 pilotlog.txt
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd   4697656 Nov 23 00:13 log.47556137._000321.job.log.1
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd       353 Nov 23 00:13 output.list
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 00:13 runtime_log
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd   6082560 Nov 23 00:13 result.tar.gz
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd      9026 Nov 23 00:13 runtime_log.err
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd       659 Nov 23 00:13 ElFLDmwUhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsUJKDmX6FPMo.diag
[2025-11-23 00:13:51] -rw-rw-r-- 1 whitlerd whitlerd     21338 Nov 23 00:13 stderr.txt
[2025-11-23 00:13:51] HITS file was successfully produced:
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd 926325699 Nov 23 00:12 shared/HITS.pool.root.1
[2025-11-23 00:13:51]  *** Contents of shared directory: ***
[2025-11-23 00:13:51] total 1311860
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd 410312737 Nov 22 14:57 ATLAS.root_0
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd    590098 Nov 22 14:57 input.tar.gz
[2025-11-23 00:13:51] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 14:57 start_atlas.sh
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd 926325699 Nov 23 00:12 HITS.pool.root.1
[2025-11-23 00:13:51] -rw------- 1 whitlerd whitlerd   6082560 Nov 23 00:13 result.tar.gz
00:13:52 (1142720): run_atlas exited; CPU time 131837.049557
00:13:52 (1142720): called boinc_finish(0)

</stderr_txt>
]]>

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