Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:07 (1681459): wrapper (7.7.26015): starting
00:02:07 (1681459): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 00:02:07] Arguments: --nthreads 4
[2025-11-23 00:02:07] Threads: 4
[2025-11-23 00:02:07] Checking for CVMFS
[2025-11-23 00:02:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:08] 2.13.2.0 489841 1043 59616 153197 1 84 2672960 4096000 4317 130560 0 3052708 99.832 325628 1347 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 00:02:08] CVMFS is ok
[2025-11-23 00:02:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 00:02:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 00:02:08] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:08] Checking for apptainer binary...
[2025-11-23 00:02:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:08] Running /usr/bin/apptainer --version
[2025-11-23 00:02:08] apptainer version 1.4.3
[2025-11-23 00:02:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:08] SETI64-Ubuntu
[2025-11-23 00:02:08] apptainer works
[2025-11-23 00:02:08] Set ATHENA_PROC_NUMBER=4
[2025-11-23 00:02:08] Set ATHENA_CORE_NUMBER=4
[2025-11-23 00:02:08] Starting ATLAS job with PandaID=6895325312
[2025-11-23 00:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:00:28]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:00:28] 2025-11-23 13:59:52,729 | INFO     | monitor loop #2347: job 0:6895325312 is in state 'finished'
[2025-11-23 09:00:28] 2025-11-23 13:59:52,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,397 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 09:00:28] 2025-11-23 13:59:54,409 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2312.353765625
[2025-11-23 09:00:28] 2025-11-23 13:59:54,420 | INFO     | time since job start (32255s) is within the limit (172800.0s)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,422 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/14/PanDA_Pilot-6895325312/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,423 | INFO     | extracted standard info from prmon json
[2025-11-23 09:00:28] 2025-11-23 13:59:54,423 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:00:28] 2025-11-23 13:59:54,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:00:28] 2025-11-23 13:59:54,428 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:00:28] 2025-11-23 13:59:54,428 | INFO     | sum of square deviations: 45903297880.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,432 | INFO     | sum of deviations: 217470311331.00003
[2025-11-23 09:00:28] 2025-11-23 13:59:54,432 | INFO     | mean x: 1763890267.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,432 | INFO     | mean y: 2248892.493383743
[2025-11-23 09:00:28] 2025-11-23 13:59:54,432 | INFO     | intersect: -8354313342.337722
[2025-11-23 09:00:28] 2025-11-23 13:59:54,432 | INFO     | chi2: 5.307287892834924
[2025-11-23 09:00:28] 2025-11-23 13:59:54,433 | INFO     | sum of square deviations: 44613952775.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,436 | INFO     | sum of deviations: 338630738776.49994
[2025-11-23 09:00:28] 2025-11-23 13:59:54,436 | INFO     | mean x: 1763890114.5
[2025-11-23 09:00:28] 2025-11-23 13:59:54,436 | INFO     | mean y: 2263206.8835877865
[2025-11-23 09:00:28] 2025-11-23 13:59:54,436 | INFO     | intersect: -13386091230.260323
[2025-11-23 09:00:28] 2025-11-23 13:59:54,437 | INFO     | chi2: 2.650836801269711
[2025-11-23 09:00:28] 2025-11-23 13:59:54,437 | INFO     | current chi2=2.650836801269711 (change=50.0528922719934 %)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,437 | INFO     | sum of square deviations: 43348980220.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | sum of deviations: 356705532296.9998
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | mean x: 1763889962.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | mean y: 2265374.747591522
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | intersect: -14512246953.232262
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | chi2: 2.5059791148827215
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | current chi2=2.5059791148827215 (change=5.464602208540519 %)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,441 | INFO     | right removable region: 518
[2025-11-23 09:00:28] 2025-11-23 13:59:54,442 | INFO     | sum of square deviations: 44613952775.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,445 | INFO     | sum of deviations: 94569143538.49998
[2025-11-23 09:00:28] 2025-11-23 13:59:54,445 | INFO     | mean x: 1763890419.5
[2025-11-23 09:00:28] 2025-11-23 13:59:54,445 | INFO     | mean y: 2263411.2385496185
[2025-11-23 09:00:28] 2025-11-23 13:59:54,445 | INFO     | intersect: -3736692585.5354986
[2025-11-23 09:00:28] 2025-11-23 13:59:54,446 | INFO     | chi2: 2.9160303472211218
[2025-11-23 09:00:28] 2025-11-23 13:59:54,446 | INFO     | current chi2=2.9160303472211218 (change=45.05611140564104 %)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,446 | INFO     | sum of square deviations: 43348980220.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | sum of deviations: 77073058482.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | mean x: 1763890572.0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | mean y: 2265518.6165703274
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | intersect: -3133873798.1944313
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | chi2: 2.8871389449012224
[2025-11-23 09:00:28] 2025-11-23 13:59:54,450 | INFO     | current chi2=2.8871389449012224 (change=0.9907785201012027 %)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,451 | INFO     | left removable region: 20
[2025-11-23 09:00:28] 2025-11-23 13:59:54,451 | INFO     | sum of square deviations: 38296995264.5
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | sum of deviations: 188017177928.4999
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | mean x: 1763890541.5
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | mean y: 2286089.4277108433
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | intersect: -8657446077.472181
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | chi2: 0.036130780308684836
[2025-11-23 09:00:28] 2025-11-23 13:59:54,455 | INFO     | current memory leak: 4.91 B/s (using 498 data points, chi2=0.04)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | could have reported an average CPU frequency of 2313 MHz (21 samples)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | ..............................
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . Timing measurements:
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . get job = 0 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . initial setup = 3 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . payload setup = 5 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . stage-in = 0 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . payload execution = 32218 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . stage-out = 4 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | . log creation = 0 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,456 | INFO     | ..............................
[2025-11-23 09:00:28] 2025-11-23 13:59:54,511 | INFO     | 
[2025-11-23 09:00:28] 2025-11-23 13:59:54,511 | INFO     | job summary report
[2025-11-23 09:00:28] 2025-11-23 13:59:54,511 | INFO     | --------------------------------------------------
[2025-11-23 09:00:28] 2025-11-23 13:59:54,511 | INFO     | PanDA job id: 6895325312
[2025-11-23 09:00:28] 2025-11-23 13:59:54,511 | INFO     | task id: 47556137
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | errors: (none)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | pilot state: finished 
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | transexitcode: 0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | exeerrorcode: 0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | exeerrordiag: 
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | exitcode: 0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | exitmsg: OK
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | cpuconsumptiontime: 127102 s
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | nevents: 1000
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | neventsw: 0
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | pid: 1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | pgrp: 1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:54,512 | INFO     | corecount: 4
[2025-11-23 09:00:28] 2025-11-23 13:59:54,513 | INFO     | event service: False
[2025-11-23 09:00:28] 2025-11-23 13:59:54,513 | INFO     | sizes: {0: 2298818, 4: 2299080, 11: 2299108, 32227: 2338676, 32233: 2347700, 32235: 2347756, 32241: 2348130}
[2025-11-23 09:00:28] 2025-11-23 13:59:54,513 | INFO     | --------------------------------------------------
[2025-11-23 09:00:28] 2025-11-23 13:59:54,513 | INFO     | 
[2025-11-23 09:00:28] 2025-11-23 13:59:54,513 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/14
[2025-11-23 09:00:28] 2025-11-23 13:59:54,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | job 6895325312 has completed (purged errors)
[2025-11-23 09:00:28] 2025-11-23 13:59:54,535 | INFO     | overall cleanup function is called
[2025-11-23 09:00:28] 2025-11-23 13:59:55,550 | INFO     | --- collectZombieJob: --- 10, [1705075]
[2025-11-23 09:00:28] 2025-11-23 13:59:55,550 | INFO     | zombie collector waiting for pid 1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:55,551 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:00:28] 2025-11-23 13:59:55,551 | INFO     | collected zombie processes
[2025-11-23 09:00:28] 2025-11-23 13:59:55,551 | INFO     | will attempt to kill all subprocesses of pid=1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:55,979 | INFO     | process IDs to be killed: [1705075] (in reverse order)
[2025-11-23 09:00:28] 2025-11-23 13:59:56,115 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:00:28] 2025-11-23 13:59:56,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:00:28] 2025-11-23 13:59:56,129 | INFO     | did not find any defunct processes belonging to 1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:56,141 | INFO     | did not find any defunct processes belonging to 1705075
[2025-11-23 09:00:28] 2025-11-23 13:59:56,142 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:00:28] 2025-11-23 13:59:56,142 | INFO     | ready for new job
[2025-11-23 09:00:28] 2025-11-23 13:59:56,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:00:28] 2025-11-23 13:59:56,146 | INFO     | ***************************************
[2025-11-23 09:00:28] 2025-11-23 13:59:56,146 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:00:28] 2025-11-23 13:59:56,146 | INFO     | ***************************************
[2025-11-23 09:00:28] 2025-11-23 13:59:56,146 | INFO     | 
[2025-11-23 09:00:28] 2025-11-23 13:59:56,155 | INFO     | architecture information:
[2025-11-23 09:00:28] 2025-11-23 13:59:56,155 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:00:28] 2025-11-23 13:59:56,172 | INFO     | cat /etc/os-release:
[2025-11-23 09:00:28] NAME="CentOS Linux"
[2025-11-23 09:00:28] VERSION="7 (Core)"
[2025-11-23 09:00:28] ID="centos"
[2025-11-23 09:00:28] ID_LIKE="rhel fedora"
[2025-11-23 09:00:28] VERSION_ID="7"
[2025-11-23 09:00:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:00:28] ANSI_COLOR="0;31"
[2025-11-23 09:00:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:00:28] HOME_URL="https://www.centos.org/"
[2025-11-23 09:00:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:00:28] 
[2025-11-23 09:00:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:00:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:00:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:00:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:00:28] 
[2025-11-23 09:00:28] 2025-11-23 13:59:56,173 | INFO     | ***************************************
[2025-11-23 09:00:28] 2025-11-23 13:59:56,676 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/14
[2025-11-23 09:00:28] 2025-11-23 13:59:56,694 | INFO     | sufficient remaining disk space (378172080128 B)
[2025-11-23 09:00:28] 2025-11-23 13:59:56,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:00:28] 2025-11-23 13:59:56,695 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:00:28] 2025-11-23 13:59:56,695 | INFO     | update_server=False
[2025-11-23 09:00:28] 2025-11-23 13:59:56,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:00:28] 2025-11-23 13:59:56,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:00:28] 2025-11-23 13:59:56,695 | INFO     | aborting loop
[2025-11-23 09:00:28] 2025-11-23 13:59:56,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:00:28] 2025-11-23 13:59:56,739 | INFO     | all payload control threads have been joined
[2025-11-23 09:00:28] 2025-11-23 13:59:56,764 | INFO     | all data control threads have been joined
[2025-11-23 09:00:28] 2025-11-23 13:59:57,269 | INFO     | all job control threads have been joined
[2025-11-23 09:00:28] 2025-11-23 13:59:57,700 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,701 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,727 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,743 | INFO     | [payload] control thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,768 | INFO     | [data] control thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,785 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:57,958 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:58,274 | INFO     | [job] control thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:58,359 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:58,692 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:58,744 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:58,774 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:59,152 | INFO     | [job] validate thread has finished
[2025-11-23 09:00:28] 2025-11-23 13:59:59,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:00:28] 2025-11-23 13:59:59,522 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:00:28] 2025-11-23 14:00:00,526 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:00:28] 2025-11-23 14:00:03,341 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:00:28] 2025-11-23 14:00:03,644 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:00:28] 2025-11-23 14:00:03,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134322152965952)>', '<ExcThread(monitor, started 134320983361280)>']
[2025-11-23 09:00:28] 2025-11-23 14:00:08,816 | INFO     | all workflow threads have been joined
[2025-11-23 09:00:28] 2025-11-23 14:00:08,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:00:28] 2025-11-23 14:00:08,816 | INFO     | traces error code: 0
[2025-11-23 09:00:28] 2025-11-23 14:00:08,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:00:28] 2025-11-23 14:00:27,864 | INFO     | PID=1686414 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:00:28] 2025-11-23 14:00:27,864 | INFO     | .. there are 3 such processes running
[2025-11-23 09:00:28] 2025-11-23 14:00:27,865 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:00:28] 2025-11-23 14:00:27,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:00:28] 2025-11-23 14:00:27,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:00:28] 2025-11-23 14:00:27,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:00:28] 2025-11-23 14:00:27,865 | INFO     | [monitor] control thread has ended
[2025-11-23 09:00:28] 2025-11-23 14:00:27,968 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:00:28] 2025-11-23 14:00:27,973 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:00:28] 2025-11-23 14:00:27,976 [wrapper] pilotpid: 1686414
[2025-11-23 09:00:28] 2025-11-23 14:00:27,979 [wrapper] Pilot exit status: 0
[2025-11-23 09:00:28] 2025-11-23 14:00:27,994 [wrapper] pandaids: 6895325312
[2025-11-23 09:00:28] 2025-11-23 14:00:28,070 [wrapper] cleanup supervisor_pilot 1960812 1686416
[2025-11-23 09:00:28] 2025-11-23 14:00:28,074 [wrapper] Test setup, not cleaning
[2025-11-23 09:00:28] 2025-11-23 14:00:28,077 [wrapper] apfmon messages muted
[2025-11-23 09:00:28] 2025-11-23 14:00:28,079 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:00:28] 2025-11-23 14:00:28,082 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:00:28]  *** Error codes and diagnostics ***
[2025-11-23 09:00:28]     "exeErrorCode": 0,
[2025-11-23 09:00:28]     "exeErrorDiag": "",
[2025-11-23 09:00:28]     "pilotErrorCode": 0,
[2025-11-23 09:00:28]     "pilotErrorDiag": "",
[2025-11-23 09:00:28]  *** Listing of results directory ***
[2025-11-23 09:00:28] total 1312524
[2025-11-23 09:00:28] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-23 09:00:28] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:40 queuedata.json
[2025-11-23 09:00:28] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:43 runpilot2-wrapper.sh
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 23 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:00:28] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 23 00:02 run_atlas
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 23 00:02 job.xml
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd 408498985 Nov 23 00:02 EVNT.47483658._000031.pool.root.1
[2025-11-23 09:00:28] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 23 00:02 shared
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd    590101 Nov 23 00:02 input.tar.gz
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd      9475 Nov 23 00:02 init_data.xml
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 23 00:02 boinc_setup_complete
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 23 00:02 boinc_lockfile
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 23 00:02 pandaJob.out
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd    989784 Nov 23 00:02 agis_schedconf.cvmfs.json
[2025-11-23 09:00:28] drwx------ 5 whitlerd whitlerd      4096 Nov 23 00:02 pilot3
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd       533 Nov 23 08:51 boinc_task_state.xml
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd 919716539 Nov 23 08:59 HITS.47556137._000304.pool.root.1
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd      1041 Nov 23 08:59 memory_monitor_summary.json
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 08:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd   1355432 Nov 23 08:59 log.47556137._000304.job.log.tgz.1
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd      8546 Nov 23 08:59 heartbeat.json
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 09:00 boinc_mmap_file
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 09:00 wrapper_checkpoint.txt
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd        95 Nov 23 09:00 pilot_heartbeat.json
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd       822 Nov 23 09:00 pilotlog.txt
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd   4588451 Nov 23 09:00 log.47556137._000304.job.log.1
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd       353 Nov 23 09:00 output.list
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 09:00 runtime_log
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd   5959680 Nov 23 09:00 result.tar.gz
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 23 09:00 runtime_log.err
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd       657 Nov 23 09:00 DLPODmuWhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuUJKDmuR7OGo.diag
[2025-11-23 09:00:28] -rw-rw-r-- 1 whitlerd whitlerd     21369 Nov 23 09:00 stderr.txt
[2025-11-23 09:00:28] HITS file was successfully produced:
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd 919716539 Nov 23 08:59 shared/HITS.pool.root.1
[2025-11-23 09:00:28]  *** Contents of shared directory: ***
[2025-11-23 09:00:28] total 1303516
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd 408498985 Nov 23 00:02 ATLAS.root_0
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd    590101 Nov 23 00:02 input.tar.gz
[2025-11-23 09:00:28] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd 919716539 Nov 23 08:59 HITS.pool.root.1
[2025-11-23 09:00:28] -rw------- 1 whitlerd whitlerd   5959680 Nov 23 09:00 result.tar.gz
09:00:29 (1681459): run_atlas exited; CPU time 127877.332844
09:00:29 (1681459): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN