Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:56:11 (1220497): wrapper (7.7.26015): starting
02:56:11 (1220497): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 02:56:11] Arguments: --nthreads 3
[2025-11-25 02:56:11] Threads: 3
[2025-11-25 02:56:11] Checking for CVMFS
[2025-11-25 02:56:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:56:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:56:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:56:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:56:11] 2.9.2.0 10375 9005 91368 153265 1 81 34312030 36864001 0 130560 0 3348791 99.926 478631 6717 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 02:56:11] CVMFS is ok
[2025-11-25 02:56:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:56:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:56:11] Further information can be found at the LHC@home message board.
[2025-11-25 02:56:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:56:11] Checking for apptainer binary...
[2025-11-25 02:56:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:56:11] Running /usr/bin/apptainer --version
[2025-11-25 02:56:11] apptainer version 1.4.1-1.1
[2025-11-25 02:56:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:56:11] atlasA303a
[2025-11-25 02:56:11] apptainer works
[2025-11-25 02:56:11] Set ATHENA_PROC_NUMBER=3
[2025-11-25 02:56:11] Set ATHENA_CORE_NUMBER=3
[2025-11-25 02:56:11] Starting ATLAS job with PandaID=6894242375
[2025-11-25 02:56:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:47:56]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:47:56] 2025-11-25 09:46:58,094 | INFO     | all data control threads have been joined
[2025-11-25 10:47:56] 2025-11-25 09:46:58,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:47:56] 2025-11-25 09:46:58,455 | INFO     | all payload control threads have been joined
[2025-11-25 10:47:56] 2025-11-25 09:46:58,908 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:58,908 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:58,909 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:58,966 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,008 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,035 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,100 | INFO     | [data] control thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:47:56] 2025-11-25 09:46:59,461 | INFO     | [payload] control thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,462 | INFO     | all job control threads have been joined
[2025-11-25 10:47:56] 2025-11-25 09:46:59,533 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:46:59,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:00,027 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:00,306 | INFO     | [job] validate thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:00,347 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:00,434 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:00,468 | INFO     | [job] control thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:03,168 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:47:56] 2025-11-25 09:47:27,970 | INFO     | PID=1224223 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 10:47:56] 2025-11-25 09:47:27,970 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:47:56] 2025-11-25 09:47:27,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:47:56] 2025-11-25 09:47:27,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:47:56] 2025-11-25 09:47:50,164 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:47:56] 2025-11-25 09:47:51,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508875618112)>', '<ExcThread(monitor, started 140508101863168)>']
[2025-11-25 10:47:56] 2025-11-25 09:47:52,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:47:56] 2025-11-25 09:47:52,099 | INFO     | [monitor] control thread has ended
[2025-11-25 10:47:56] 2025-11-25 09:47:56,408 | INFO     | all workflow threads have been joined
[2025-11-25 10:47:56] 2025-11-25 09:47:56,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:47:56] 2025-11-25 09:47:56,408 | INFO     | traces error code: 0
[2025-11-25 10:47:56] 2025-11-25 09:47:56,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:47:56] 2025-11-25 09:47:56,461 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:47:56] 2025-11-25 09:47:56,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:47:56] 2025-11-25 09:47:56,466 [wrapper] pilotpid: 1224223
[2025-11-25 10:47:56] 2025-11-25 09:47:56,469 [wrapper] Pilot exit status: 0
[2025-11-25 10:47:56] 2025-11-25 09:47:56,476 [wrapper] pandaids: 6894242375
[2025-11-25 10:47:56] 2025-11-25 09:47:56,494 [wrapper] cleanup supervisor_pilot 1280144 1224224
[2025-11-25 10:47:56] 2025-11-25 09:47:56,497 [wrapper] Test setup, not cleaning
[2025-11-25 10:47:56] 2025-11-25 09:47:56,499 [wrapper] apfmon messages muted
[2025-11-25 10:47:56] 2025-11-25 09:47:56,502 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:47:56] 2025-11-25 09:47:56,504 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:47:56]  *** Error codes and diagnostics ***
[2025-11-25 10:47:56]     "exeErrorCode": 0,
[2025-11-25 10:47:56]     "exeErrorDiag": "",
[2025-11-25 10:47:56]     "pilotErrorCode": 0,
[2025-11-25 10:47:56]     "pilotErrorDiag": "",
[2025-11-25 10:47:56]  *** Listing of results directory ***
[2025-11-25 10:47:56] total 1303264
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-25 10:47:56] -rwx------ 1 boinc boinc     36292 Nov 21 01:52 runpilot2-wrapper.sh
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      5112 Nov 21 01:53 queuedata.json
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc       100 Nov 25 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:47:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 02:56 run_atlas
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc       105 Nov 25 02:56 job.xml
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc 409105887 Nov 25 02:56 EVNT.47493127._002064.pool.root.1
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc    590110 Nov 25 02:56 input.tar.gz
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:56 start_atlas.sh
[2025-11-25 10:47:56] drwxrwx--x 2 boinc boinc      4096 Nov 25 02:56 shared
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:56 boinc_setup_complete
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      6451 Nov 25 02:56 init_data.xml
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:56 boinc_lockfile
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      2785 Nov 25 02:56 pandaJob.out
[2025-11-25 10:47:56] -rw------- 1 boinc boinc    991801 Nov 25 02:56 agis_schedconf.cvmfs.json
[2025-11-25 10:47:56] drwx------ 5 boinc boinc      4096 Nov 25 02:56 pilot3
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc       532 Nov 25 10:42 boinc_task_state.xml
[2025-11-25 10:47:56] -rw------- 1 boinc boinc 911265094 Nov 25 10:46 HITS.47533967._000355.pool.root.1
[2025-11-25 10:47:56] -rw------- 1 boinc boinc        95 Nov 25 10:46 pilot_heartbeat.json
[2025-11-25 10:47:56] -rw------- 1 boinc boinc      1021 Nov 25 10:46 memory_monitor_summary.json
[2025-11-25 10:47:56] -rw------- 1 boinc boinc   1516240 Nov 25 10:46 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:47:56] -rw------- 1 boinc boinc   1158554 Nov 25 10:46 log.47533967._000355.job.log.tgz.1
[2025-11-25 10:47:56] -rw------- 1 boinc boinc      8562 Nov 25 10:46 heartbeat.json
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc        28 Nov 25 10:47 wrapper_checkpoint.txt
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      8192 Nov 25 10:47 boinc_mmap_file
[2025-11-25 10:47:56] -rw------- 1 boinc boinc      4752 Nov 25 10:47 pilotlog.txt
[2025-11-25 10:47:56] -rw------- 1 boinc boinc   3977319 Nov 25 10:47 log.47533967._000355.job.log.1
[2025-11-25 10:47:56] -rw------- 1 boinc boinc       353 Nov 25 10:47 output.list
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc       620 Nov 25 10:47 runtime_log
[2025-11-25 10:47:56] -rw------- 1 boinc boinc   5150720 Nov 25 10:47 result.tar.gz
[2025-11-25 10:47:56] -rw------- 1 boinc boinc       669 Nov 25 10:47 vYDNDmVZUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuDHKDm27Nwgn.diag
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      8918 Nov 25 10:47 runtime_log.err
[2025-11-25 10:47:56] -rw-r--r-- 1 boinc boinc      6868 Nov 25 10:47 stderr.txt
[2025-11-25 10:47:56] HITS file was successfully produced:
[2025-11-25 10:47:56] -rw------- 1 boinc boinc 911265094 Nov 25 10:46 shared/HITS.pool.root.1
[2025-11-25 10:47:56]  *** Contents of shared directory: ***
[2025-11-25 10:47:56] total 1295064
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc 409105887 Nov 25 02:56 ATLAS.root_0
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc    590110 Nov 25 02:56 input.tar.gz
[2025-11-25 10:47:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:56 start_atlas.sh
[2025-11-25 10:47:56] -rw------- 1 boinc boinc 911265094 Nov 25 10:46 HITS.pool.root.1
[2025-11-25 10:47:56] -rw------- 1 boinc boinc   5150720 Nov 25 10:47 result.tar.gz
10:47:57 (1220497): run_atlas exited; CPU time 83256.335495
10:47:57 (1220497): called boinc_finish(0)

</stderr_txt>
]]>

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