Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:40:40 (800572): wrapper (7.7.26015): starting
06:40:40 (800572): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 06:40:40] Arguments: --nthreads 12
[2025-11-23 06:40:40] Threads: 12
[2025-11-23 06:40:40] Checking for CVMFS
[2025-11-23 06:40:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 06:40:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 06:40:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 06:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 06:40:40] 2.13.3.0 13543 2294 72336 153198 3 81 3220212 4097025 1044 130560 0 1780383 99.875 272868 16267 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-23 06:40:40] CVMFS is ok
[2025-11-23 06:40:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 06:40:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 06:40:40] Further information can be found at the LHC@home message board.
[2025-11-23 06:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 06:40:40] Checking for apptainer binary...
[2025-11-23 06:40:40] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-23 06:40:40] apptainer is not installed, using version from CVMFS
[2025-11-23 06:40:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 06:40:40] pckelar5.cern.ch
[2025-11-23 06:40:40] apptainer works
[2025-11-23 06:40:40] Set ATHENA_PROC_NUMBER=12
[2025-11-23 06:40:40] Set ATHENA_CORE_NUMBER=12
[2025-11-23 06:40:40] Starting ATLAS job with PandaID=6894245739
[2025-11-23 06:40:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 18:39:09]  *** The last 200 lines of the pilot log: ***
[2025-11-23 18:39:09] 2025-11-23 17:38:31,585 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 18:39:09] 2025-11-23 17:38:31,585 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 18:39:09] 2025-11-23 17:38:31,594 | INFO     | fitting pss+swap vs Time
[2025-11-23 18:39:09] 2025-11-23 17:38:31,594 | INFO     | sum of square deviations: 109116339621.93344
[2025-11-23 18:39:09] 2025-11-23 17:38:31,604 | INFO     | sum of deviations: 1482038678680.4404
[2025-11-23 18:39:09] 2025-11-23 17:38:31,604 | INFO     | mean x: 1763897985.4716713
[2025-11-23 18:39:09] 2025-11-23 17:38:31,604 | INFO     | mean y: 3561181.422096317
[2025-11-23 18:39:09] 2025-11-23 17:38:31,604 | INFO     | intersect: -23954033517.71363
[2025-11-23 18:39:09] 2025-11-23 17:38:31,605 | INFO     | chi2: 7.866316621867809
[2025-11-23 18:39:09] 2025-11-23 17:38:31,605 | INFO     | sum of square deviations: 106814580104.67929
[2025-11-23 18:39:09] 2025-11-23 17:38:31,614 | INFO     | sum of deviations: 1784027849317.8157
[2025-11-23 18:39:09] 2025-11-23 17:38:31,614 | INFO     | mean x: 1763897832.978602
[2025-11-23 18:39:09] 2025-11-23 17:38:31,614 | INFO     | mean y: 3581179.3209700426
[2025-11-23 18:39:09] 2025-11-23 17:38:31,614 | INFO     | intersect: -29457217658.265015
[2025-11-23 18:39:09] 2025-11-23 17:38:31,615 | INFO     | chi2: 4.360078281387293
[2025-11-23 18:39:09] 2025-11-23 17:38:31,615 | INFO     | current chi2=4.360078281387293 (change=44.572809728169595 %)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,616 | INFO     | sum of square deviations: 104545425849.85637
[2025-11-23 18:39:09] 2025-11-23 17:38:31,624 | INFO     | sum of deviations: 1969375405616.805
[2025-11-23 18:39:09] 2025-11-23 17:38:31,625 | INFO     | mean x: 1763897680.4856322
[2025-11-23 18:39:09] 2025-11-23 17:38:31,625 | INFO     | mean y: 3593632.0804597703
[2025-11-23 18:39:09] 2025-11-23 17:38:31,625 | INFO     | intersect: -33223844887.915825
[2025-11-23 18:39:09] 2025-11-23 17:38:31,625 | INFO     | chi2: 2.906347025838154
[2025-11-23 18:39:09] 2025-11-23 17:38:31,625 | INFO     | current chi2=2.906347025838154 (change=33.34186135498901 %)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,626 | INFO     | sum of square deviations: 102308602083.94801
[2025-11-23 18:39:09] 2025-11-23 17:38:31,635 | INFO     | sum of deviations: 2030035373621.1338
[2025-11-23 18:39:09] 2025-11-23 17:38:31,635 | INFO     | mean x: 1763897527.991317
[2025-11-23 18:39:09] 2025-11-23 17:38:31,635 | INFO     | mean y: 3597751.522431259
[2025-11-23 18:39:09] 2025-11-23 17:38:31,635 | INFO     | intersect: -34996141315.648964
[2025-11-23 18:39:09] 2025-11-23 17:38:31,636 | INFO     | chi2: 2.515892406187426
[2025-11-23 18:39:09] 2025-11-23 17:38:31,636 | INFO     | current chi2=2.515892406187426 (change=13.434549149825834 %)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,636 | INFO     | right removable region: 690
[2025-11-23 18:39:09] 2025-11-23 17:38:31,637 | INFO     | sum of square deviations: 106814204467.63475
[2025-11-23 18:39:09] 2025-11-23 17:38:31,645 | INFO     | sum of deviations: 1231092268349.4075
[2025-11-23 18:39:09] 2025-11-23 17:38:31,646 | INFO     | mean x: 1763898137.9771755
[2025-11-23 18:39:09] 2025-11-23 17:38:31,646 | INFO     | mean y: 3577778.9629101283
[2025-11-23 18:39:09] 2025-11-23 17:38:31,646 | INFO     | intersect: -20326315334.43475
[2025-11-23 18:39:09] 2025-11-23 17:38:31,646 | INFO     | chi2: 5.552438218225756
[2025-11-23 18:39:09] 2025-11-23 17:38:31,646 | INFO     | current chi2=5.552438218225756 (change=29.415017407380134 %)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,647 | INFO     | sum of square deviations: 104544845867.63208
[2025-11-23 18:39:09] 2025-11-23 17:38:31,656 | INFO     | sum of deviations: 1158903313950.8047
[2025-11-23 18:39:09] 2025-11-23 17:38:31,656 | INFO     | mean x: 1763898290.4770114
[2025-11-23 18:39:09] 2025-11-23 17:38:31,656 | INFO     | mean y: 3582628.675287356
[2025-11-23 18:39:09] 2025-11-23 17:38:31,656 | INFO     | intersect: -19549629749.620106
[2025-11-23 18:39:09] 2025-11-23 17:38:31,657 | INFO     | chi2: 5.486242945740714
[2025-11-23 18:39:09] 2025-11-23 17:38:31,657 | INFO     | current chi2=5.486242945740714 (change=1.192183863798026 %)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,657 | INFO     | left removable region: 20
[2025-11-23 18:39:09] 2025-11-23 17:38:31,658 | INFO     | sum of square deviations: 93261336907.49336
[2025-11-23 18:39:09] 2025-11-23 17:38:31,666 | INFO     | sum of deviations: 1602700754701.947
[2025-11-23 18:39:09] 2025-11-23 17:38:31,666 | INFO     | mean x: 1763898107.497015
[2025-11-23 18:39:09] 2025-11-23 17:38:31,666 | INFO     | mean y: 3626806.973134328
[2025-11-23 18:39:09] 2025-11-23 17:38:31,666 | INFO     | intersect: -30309050684.525043
[2025-11-23 18:39:09] 2025-11-23 17:38:31,667 | INFO     | chi2: 0.08012692799744403
[2025-11-23 18:39:09] 2025-11-23 17:38:31,667 | INFO     | current memory leak: 17.19 B/s (using 670 data points, chi2=0.08)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,667 | INFO     | could have reported an average CPU frequency of 2803 MHz (27 samples)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | ..............................
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . Timing measurements:
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . get job = 0 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . initial setup = 1 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . payload setup = 8 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . stage-in = 0 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . payload execution = 43020 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . stage-out = 2 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | . log creation = 0 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,668 | INFO     | ..............................
[2025-11-23 18:39:09] 2025-11-23 17:38:31,741 | INFO     | 
[2025-11-23 18:39:09] 2025-11-23 17:38:31,741 | INFO     | job summary report
[2025-11-23 18:39:09] 2025-11-23 17:38:31,741 | INFO     | --------------------------------------------------
[2025-11-23 18:39:09] 2025-11-23 17:38:31,741 | INFO     | PanDA job id: 6894245739
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | task id: 47533967
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | errors: (none)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | pilot state: finished 
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | transexitcode: 0
[2025-11-23 18:39:09] 2025-11-23 17:38:31,742 | INFO     | exeerrorcode: 0
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | exeerrordiag: 
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | exitcode: 0
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | exitmsg: OK
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | cpuconsumptiontime: 500019 s
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | nevents: 1000
[2025-11-23 18:39:09] 2025-11-23 17:38:31,743 | INFO     | neventsw: 0
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | pid: 811933
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | pgrp: 811933
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | corecount: 12
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | event service: False
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | sizes: {0: 2298578, 1: 2298833, 2: 2298833, 6: 2299123, 12: 2299151, 43032: 2343180, 43033: 2343307, 43037: 2352413, 43043: 2352603}
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | --------------------------------------------------
[2025-11-23 18:39:09] 2025-11-23 17:38:31,744 | INFO     | 
[2025-11-23 18:39:09] 2025-11-23 17:38:31,745 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-23 18:39:09] 2025-11-23 17:38:31,762 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,765 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 18:39:09] 2025-11-23 17:38:31,766 | INFO     | job 6894245739 has completed (purged errors)
[2025-11-23 18:39:09] 2025-11-23 17:38:31,766 | INFO     | overall cleanup function is called
[2025-11-23 18:39:09] 2025-11-23 17:38:32,785 | INFO     | --- collectZombieJob: --- 10, [811933]
[2025-11-23 18:39:09] 2025-11-23 17:38:32,785 | INFO     | zombie collector waiting for pid 811933
[2025-11-23 18:39:09] 2025-11-23 17:38:32,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 18:39:09] 2025-11-23 17:38:32,786 | INFO     | collected zombie processes
[2025-11-23 18:39:09] 2025-11-23 17:38:32,786 | INFO     | will attempt to kill all subprocesses of pid=811933
[2025-11-23 18:39:09] 2025-11-23 17:38:32,980 | INFO     | process IDs to be killed: [811933] (in reverse order)
[2025-11-23 18:39:09] 2025-11-23 17:38:33,044 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 18:39:09] 2025-11-23 17:38:33,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 18:39:09] 2025-11-23 17:38:33,051 | INFO     | did not find any defunct processes belonging to 811933
[2025-11-23 18:39:09] 2025-11-23 17:38:33,058 | INFO     | did not find any defunct processes belonging to 811933
[2025-11-23 18:39:09] 2025-11-23 17:38:33,060 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 18:39:09] 2025-11-23 17:38:33,060 | INFO     | ready for new job
[2025-11-23 18:39:09] 2025-11-23 17:38:33,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 18:39:09] 2025-11-23 17:38:33,063 | INFO     | ***************************************
[2025-11-23 18:39:09] 2025-11-23 17:38:33,063 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 18:39:09] 2025-11-23 17:38:33,063 | INFO     | ***************************************
[2025-11-23 18:39:09] 2025-11-23 17:38:33,064 | INFO     | 
[2025-11-23 18:39:09] 2025-11-23 17:38:33,065 | INFO     | architecture information:
[2025-11-23 18:39:09] 2025-11-23 17:38:33,066 | INFO     | executing command: cat /etc/os-release
[2025-11-23 18:39:09] 2025-11-23 17:38:33,080 | INFO     | cat /etc/os-release:
[2025-11-23 18:39:09] NAME="CentOS Linux"
[2025-11-23 18:39:09] VERSION="7 (Core)"
[2025-11-23 18:39:09] ID="centos"
[2025-11-23 18:39:09] ID_LIKE="rhel fedora"
[2025-11-23 18:39:09] VERSION_ID="7"
[2025-11-23 18:39:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 18:39:09] ANSI_COLOR="0;31"
[2025-11-23 18:39:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 18:39:09] HOME_URL="https://www.centos.org/"
[2025-11-23 18:39:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 18:39:09] 
[2025-11-23 18:39:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 18:39:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 18:39:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 18:39:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 18:39:09] 
[2025-11-23 18:39:09] 2025-11-23 17:38:33,081 | INFO     | ***************************************
[2025-11-23 18:39:09] 2025-11-23 17:38:33,584 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-23 18:39:09] 2025-11-23 17:38:33,602 | INFO     | sufficient remaining disk space (1813911699456 B)
[2025-11-23 18:39:09] 2025-11-23 17:38:33,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 18:39:09] 2025-11-23 17:38:33,603 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 18:39:09] 2025-11-23 17:38:33,603 | INFO     | update_server=False
[2025-11-23 18:39:09] 2025-11-23 17:38:33,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 18:39:09] 2025-11-23 17:38:33,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:39:09] 2025-11-23 17:38:33,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 18:39:09] 2025-11-23 17:38:33,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:39:09] 2025-11-23 17:38:33,604 | INFO     | aborting loop
[2025-11-23 18:39:09] 2025-11-23 17:38:33,751 | INFO     | all data control threads have been joined
[2025-11-23 18:39:09] 2025-11-23 17:38:34,609 | INFO     | [job] queue monitor thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:34,609 | INFO     | [job] retrieve thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:34,610 | INFO     | [job] job monitor thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:34,687 | INFO     | all job control threads have been joined
[2025-11-23 18:39:09] 2025-11-23 17:38:34,692 | INFO     | [job] validate thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:34,756 | INFO     | [data] control thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:34,794 | INFO     | all payload control threads have been joined
[2025-11-23 18:39:09] 2025-11-23 17:38:34,893 | INFO     | [payload] validate_post thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,020 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,235 | INFO     | [data] copytool_in thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,542 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,609 | INFO     | [data] copytool_out thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,692 | INFO     | [job] control thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,792 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,799 | INFO     | [payload] control thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:35,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 18:39:09] 2025-11-23 17:38:35,967 | INFO     | [payload] failed_post thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:36,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:38:39,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 18:39:09] 2025-11-23 17:39:03,130 | INFO     | [monitor] cgroup control has ended
[2025-11-23 18:39:09] 2025-11-23 17:39:04,350 | INFO     | PID=804423 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 18:39:09] 2025-11-23 17:39:04,351 | INFO     | .. there are 2 such processes running
[2025-11-23 18:39:09] 2025-11-23 17:39:04,352 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 18:39:09] 2025-11-23 17:39:04,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 18:39:09] 2025-11-23 17:39:04,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 18:39:09] 2025-11-23 17:39:04,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473934784320)>', '<ExcThread(monitor, started 140473381402368)>']
[2025-11-23 18:39:09] 2025-11-23 17:39:05,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 18:39:09] 2025-11-23 17:39:05,358 | INFO     | [monitor] control thread has ended
[2025-11-23 18:39:09] 2025-11-23 17:39:09,533 | INFO     | all workflow threads have been joined
[2025-11-23 18:39:09] 2025-11-23 17:39:09,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 18:39:09] 2025-11-23 17:39:09,534 | INFO     | traces error code: 0
[2025-11-23 18:39:09] 2025-11-23 17:39:09,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 18:39:09] 2025-11-23 17:39:09,644 [wrapper] ==== pilot stdout END ====
[2025-11-23 18:39:09] 2025-11-23 17:39:09,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 18:39:09] 2025-11-23 17:39:09,650 [wrapper] pilotpid: 804423
[2025-11-23 18:39:09] 2025-11-23 17:39:09,652 [wrapper] Pilot exit status: 0
[2025-11-23 18:39:09] 2025-11-23 17:39:09,662 [wrapper] pandaids: 6894245739
[2025-11-23 18:39:09] 2025-11-23 17:39:09,698 [wrapper] cleanup supervisor_pilot 1042925 804424
[2025-11-23 18:39:09] 2025-11-23 17:39:09,701 [wrapper] Test setup, not cleaning
[2025-11-23 18:39:09] 2025-11-23 17:39:09,704 [wrapper] apfmon messages muted
[2025-11-23 18:39:09] 2025-11-23 17:39:09,706 [wrapper] ==== wrapper stdout END ====
[2025-11-23 18:39:09] 2025-11-23 17:39:09,709 [wrapper] ==== wrapper stderr END ====
[2025-11-23 18:39:09]  *** Error codes and diagnostics ***
[2025-11-23 18:39:09]     "exeErrorCode": 0,
[2025-11-23 18:39:09]     "exeErrorDiag": "",
[2025-11-23 18:39:09]     "pilotErrorCode": 0,
[2025-11-23 18:39:09]     "pilotErrorDiag": "",
[2025-11-23 18:39:09]  *** Listing of results directory ***
[2025-11-23 18:39:09] total 1326532
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:17 queuedata.json
[2025-11-23 18:39:09] -rwx------ 1 boinc boinc     36292 Nov 21 02:18 runpilot2-wrapper.sh
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc       100 Nov 23 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 18:39:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 06:40 run_atlas
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc       105 Nov 23 06:40 job.xml
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc 412009102 Nov 23 06:40 EVNT.47493127._002080.pool.root.1
[2025-11-23 18:39:09] drwxrwx--x 2 boinc boinc        68 Nov 23 06:40 shared
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc    590100 Nov 23 06:40 input.tar.gz
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc      6295 Nov 23 06:40 init_data.xml
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 06:40 start_atlas.sh
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc         0 Nov 23 06:40 boinc_lockfile
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc      2785 Nov 23 06:40 pandaJob.out
[2025-11-23 18:39:09] -rw------- 1 boinc boinc    989784 Nov 23 06:40 agis_schedconf.cvmfs.json
[2025-11-23 18:39:09] drwx------ 5 boinc boinc      4096 Nov 23 06:40 pilot3
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc       533 Nov 23 18:24 boinc_task_state.xml
[2025-11-23 18:39:09] -rw------- 1 boinc boinc 925717824 Nov 23 18:37 HITS.47533967._000515.pool.root.1
[2025-11-23 18:39:09] -rw------- 1 boinc boinc      1036 Nov 23 18:38 memory_monitor_summary.json
[2025-11-23 18:39:09] -rw------- 1 boinc boinc   1526164 Nov 23 18:38 agis_ddmendpoints.agis.ALL.json
[2025-11-23 18:39:09] -rw------- 1 boinc boinc   2405169 Nov 23 18:38 log.47533967._000515.job.log.tgz.1
[2025-11-23 18:39:09] -rw------- 1 boinc boinc      8624 Nov 23 18:38 heartbeat.json
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc        29 Nov 23 18:38 wrapper_checkpoint.txt
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc      8192 Nov 23 18:38 boinc_mmap_file
[2025-11-23 18:39:09] -rw------- 1 boinc boinc        95 Nov 23 18:39 pilot_heartbeat.json
[2025-11-23 18:39:09] -rw------- 1 boinc boinc      4824 Nov 23 18:39 pilotlog.txt
[2025-11-23 18:39:09] -rw------- 1 boinc boinc   5957603 Nov 23 18:39 log.47533967._000515.job.log.1
[2025-11-23 18:39:09] -rw------- 1 boinc boinc       353 Nov 23 18:39 output.list
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc       620 Nov 23 18:39 runtime_log
[2025-11-23 18:39:09] -rw------- 1 boinc boinc   8386560 Nov 23 18:39 result.tar.gz
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc      8842 Nov 23 18:39 runtime_log.err
[2025-11-23 18:39:09] -rw------- 1 boinc boinc       665 Nov 23 18:39 MYXLDmUyUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmInIKDmezWfsn.diag
[2025-11-23 18:39:09] -rw-r--r-- 1 boinc boinc     21231 Nov 23 18:39 stderr.txt
[2025-11-23 18:39:09] HITS file was successfully produced:
[2025-11-23 18:39:09] -rw------- 1 boinc boinc 925717824 Nov 23 18:37 shared/HITS.pool.root.1
[2025-11-23 18:39:09]  *** Contents of shared directory: ***
[2025-11-23 18:39:09] total 1315168
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc 412009102 Nov 23 06:40 ATLAS.root_0
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc    590100 Nov 23 06:40 input.tar.gz
[2025-11-23 18:39:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 06:40 start_atlas.sh
[2025-11-23 18:39:09] -rw------- 1 boinc boinc 925717824 Nov 23 18:37 HITS.pool.root.1
[2025-11-23 18:39:09] -rw------- 1 boinc boinc   8386560 Nov 23 18:39 result.tar.gz
18:39:11 (800572): run_atlas exited; CPU time 500321.122016
18:39:11 (800572): called boinc_finish(0)

</stderr_txt>
]]>

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