Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:54:26 (912123): wrapper (7.7.26015): starting
11:54:26 (912123): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 11:54:26] Arguments: --nthreads 3
[2025-11-26 11:54:26] Threads: 3
[2025-11-26 11:54:26] Checking for CVMFS
[2025-11-26 11:54:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:54:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:54:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:54:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:54:26] 2.9.2.0 3626579 11038 91292 153318 3 81 8885980 36864000 0 130560 0 4032890 99.861 656113 9063 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 11:54:26] CVMFS is ok
[2025-11-26 11:54:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:54:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:54:26] Further information can be found at the LHC@home message board.
[2025-11-26 11:54:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:54:26] Checking for apptainer binary...
[2025-11-26 11:54:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:54:26] Running /usr/bin/apptainer --version
[2025-11-26 11:54:26] apptainer version 1.4.1-1.1
[2025-11-26 11:54:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:54:26] thA332
[2025-11-26 11:54:26] apptainer works
[2025-11-26 11:54:26] Set ATHENA_PROC_NUMBER=3
[2025-11-26 11:54:26] Set ATHENA_CORE_NUMBER=3
[2025-11-26 11:54:26] Starting ATLAS job with PandaID=6895324421
[2025-11-26 11:54:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:19:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:19:15] 2025-11-26 19:18:49,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:19:15] 2025-11-26 19:18:49,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:19:15] 2025-11-26 19:18:49,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:19:15] 2025-11-26 19:18:49,376 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:19:15] 2025-11-26 19:18:49,376 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:19:15] 2025-11-26 19:18:49,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:19:15] 2025-11-26 19:18:49,376 | INFO     | will abort loop
[2025-11-26 20:19:15] 2025-11-26 19:18:50,022 | INFO     | all data control threads have been joined
[2025-11-26 20:19:15] 2025-11-26 19:18:50,050 | INFO     | all job control threads have been joined
[2025-11-26 20:19:15] 2025-11-26 19:18:50,169 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,170 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:19:15] 2025-11-26 19:18:50,218 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,357 | INFO     | all payload control threads have been joined
[2025-11-26 20:19:15] 2025-11-26 19:18:50,382 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,602 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,767 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,944 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:50,986 | INFO     | [job] validate thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,027 | INFO     | [data] control thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,056 | INFO     | [job] control thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,138 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,170 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:51,363 | INFO     | [payload] control thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:54,215 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:18:59,529 | INFO     | job.realtimelogging is not enabled
[2025-11-26 20:19:15] 2025-11-26 19:19:00,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:19:15] 2025-11-26 19:19:09,424 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:19:15] 2025-11-26 19:19:10,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790667519808)>', '<ExcThread(monitor, started 139790028625664)>']
[2025-11-26 20:19:15] 2025-11-26 19:19:11,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:19:15] 2025-11-26 19:19:11,274 | INFO     | [monitor] control thread has ended
[2025-11-26 20:19:15] 2025-11-26 19:19:15,543 | INFO     | all workflow threads have been joined
[2025-11-26 20:19:15] 2025-11-26 19:19:15,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:19:15] 2025-11-26 19:19:15,543 | INFO     | traces error code: 0
[2025-11-26 20:19:15] 2025-11-26 19:19:15,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:19:15] 2025-11-26 19:19:15,594 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:19:15] 2025-11-26 19:19:15,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:19:15] 2025-11-26 19:19:15,599 [wrapper] pilotpid: 915851
[2025-11-26 20:19:15] 2025-11-26 19:19:15,601 [wrapper] Pilot exit status: 0
[2025-11-26 20:19:15] 2025-11-26 19:19:15,608 [wrapper] pandaids: 6895324421
[2025-11-26 20:19:15] 2025-11-26 19:19:15,624 [wrapper] cleanup supervisor_pilot  975548 915852
[2025-11-26 20:19:15] 2025-11-26 19:19:15,626 [wrapper] Test setup, not cleaning
[2025-11-26 20:19:15] 2025-11-26 19:19:15,629 [wrapper] apfmon messages muted
[2025-11-26 20:19:15] 2025-11-26 19:19:15,631 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:19:15] 2025-11-26 19:19:15,634 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:19:15]  *** Error codes and diagnostics ***
[2025-11-26 20:19:15]     "exeErrorCode": 0,
[2025-11-26 20:19:15]     "exeErrorDiag": "",
[2025-11-26 20:19:15]     "pilotErrorCode": 0,
[2025-11-26 20:19:15]     "pilotErrorDiag": "",
[2025-11-26 20:19:15]  *** Listing of results directory ***
[2025-11-26 20:19:15] total 1322000
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:18 queuedata.json
[2025-11-26 20:19:15] -rwx------ 1 boinc boinc     36292 Nov 21 15:19 runpilot2-wrapper.sh
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc       100 Nov 26 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:19:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 11:54 run_atlas
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc       105 Nov 26 11:54 job.xml
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc 411303479 Nov 26 11:54 EVNT.47483658._000023.pool.root.1
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc    590101 Nov 26 11:54 input.tar.gz
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc     15847 Nov 26 11:54 start_atlas.sh
[2025-11-26 20:19:15] drwxrwx--x 2 boinc boinc      4096 Nov 26 11:54 shared
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc         0 Nov 26 11:54 boinc_setup_complete
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      6440 Nov 26 11:54 init_data.xml
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc         0 Nov 26 11:54 boinc_lockfile
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      2781 Nov 26 11:54 pandaJob.out
[2025-11-26 20:19:15] -rw------- 1 boinc boinc    991827 Nov 26 11:54 agis_schedconf.cvmfs.json
[2025-11-26 20:19:15] drwx------ 5 boinc boinc      4096 Nov 26 11:54 pilot3
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc       531 Nov 26 20:14 boinc_task_state.xml
[2025-11-26 20:19:15] -rw------- 1 boinc boinc        95 Nov 26 20:18 pilot_heartbeat.json
[2025-11-26 20:19:15] -rw------- 1 boinc boinc 927643925 Nov 26 20:18 HITS.47556137._000221.pool.root.1
[2025-11-26 20:19:15] -rw------- 1 boinc boinc      1024 Nov 26 20:18 memory_monitor_summary.json
[2025-11-26 20:19:15] -rw------- 1 boinc boinc   1516240 Nov 26 20:18 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:19:15] -rw------- 1 boinc boinc   1193489 Nov 26 20:18 log.47556137._000221.job.log.tgz.1
[2025-11-26 20:19:15] -rw------- 1 boinc boinc      8559 Nov 26 20:18 heartbeat.json
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      8192 Nov 26 20:19 boinc_mmap_file
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc        28 Nov 26 20:19 wrapper_checkpoint.txt
[2025-11-26 20:19:15] -rw------- 1 boinc boinc      4814 Nov 26 20:19 pilotlog.txt
[2025-11-26 20:19:15] -rw------- 1 boinc boinc   4246853 Nov 26 20:19 log.47556137._000221.job.log.1
[2025-11-26 20:19:15] -rw------- 1 boinc boinc       353 Nov 26 20:19 output.list
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc       620 Nov 26 20:19 runtime_log
[2025-11-26 20:19:15] -rw------- 1 boinc boinc   5457920 Nov 26 20:19 result.tar.gz
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      8898 Nov 26 20:19 runtime_log.err
[2025-11-26 20:19:15] -rw------- 1 boinc boinc       665 Nov 26 20:19 pu8KDmIAhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmTJKDmNTvdPm.diag
[2025-11-26 20:19:15] -rw-r--r-- 1 boinc boinc      7076 Nov 26 20:19 stderr.txt
[2025-11-26 20:19:15] HITS file was successfully produced:
[2025-11-26 20:19:15] -rw------- 1 boinc boinc 927643925 Nov 26 20:18 shared/HITS.pool.root.1
[2025-11-26 20:19:15]  *** Contents of shared directory: ***
[2025-11-26 20:19:15] total 1313504
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc 411303479 Nov 26 11:54 ATLAS.root_0
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc    590101 Nov 26 11:54 input.tar.gz
[2025-11-26 20:19:15] -rw-r--r-- 2 boinc boinc     15847 Nov 26 11:54 start_atlas.sh
[2025-11-26 20:19:15] -rw------- 1 boinc boinc 927643925 Nov 26 20:18 HITS.pool.root.1
[2025-11-26 20:19:15] -rw------- 1 boinc boinc   5457920 Nov 26 20:19 result.tar.gz
20:19:16 (912123): run_atlas exited; CPU time 89376.193418
20:19:16 (912123): called boinc_finish(0)

</stderr_txt>
]]>

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