Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:56:45 (29742): wrapper (7.7.26015): starting
19:56:45 (29742): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 19:56:45] Arguments: --nthreads 8
[2025-11-24 19:56:45] Threads: 8
[2025-11-24 19:56:45] Checking for CVMFS
[2025-11-24 19:56:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 19:56:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 19:56:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 19:56:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 19:56:49] 2.11.2.0 15981 187849 138240 153255 0 85 20611420 25165825 1027 130560 12 66369828 99.881 36388293 2395 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 19:56:49] CVMFS is ok
[2025-11-24 19:56:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 19:56:49] Checking for apptainer binary...
[2025-11-24 19:56:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 19:56:49] Running /usr/bin/apptainer --version
[2025-11-24 19:56:49] apptainer version 1.3.2-1.el7
[2025-11-24 19:56:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 19:57:00] cg-vwn479.simple-grid.lan
[2025-11-24 19:57:00] apptainer works
[2025-11-24 19:57:00] Set ATHENA_PROC_NUMBER=8
[2025-11-24 19:57:00] Set ATHENA_CORE_NUMBER=8
[2025-11-24 19:57:00] Starting ATLAS job with PandaID=6895324679
[2025-11-24 19:57:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:21:47]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:21:47] 2025-11-25 16:20:32,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:21:47] 2025-11-25 16:20:34,670 | INFO     | time since job start (76752s) is within the limit (172800.0s)
[2025-11-25 17:21:47] 2025-11-25 16:20:35,415 | INFO     | monitor loop #5229: job 0:6895324679 is in state 'finished'
[2025-11-25 17:21:47] 2025-11-25 16:20:35,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:21:47] 2025-11-25 16:20:36,677 | INFO     | time since job start (76754s) is within the limit (172800.0s)
[2025-11-25 17:21:47] 2025-11-25 16:20:37,921 | INFO     | monitor loop #5230: job 0:6895324679 is in state 'finished'
[2025-11-25 17:21:47] 2025-11-25 16:20:37,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:21:47] 2025-11-25 16:20:38,685 | INFO     | time since job start (76756s) is within the limit (172800.0s)
[2025-11-25 17:21:47] 2025-11-25 16:20:39,903 | INFO     | PID=1079 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 17:21:47] 2025-11-25 16:20:39,904 | INFO     | .. there are 9 such processes running
[2025-11-25 17:21:47] 2025-11-25 16:20:40,426 | INFO     | monitor loop #5231: job 0:6895324679 is in state 'finished'
[2025-11-25 17:21:47] 2025-11-25 16:20:40,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:21:47] 2025-11-25 16:20:40,905 | INFO     | time since job start (76758s) is within the limit (172800.0s)
[2025-11-25 17:21:47] 2025-11-25 16:20:42,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 17:21:47] 2025-11-25 16:20:42,873 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-25 17:21:47] 2025-11-25 16:20:42,875 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895324679/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:21:47] 2025-11-25 16:20:42,876 | INFO     | extracted standard info from prmon json
[2025-11-25 17:21:47] 2025-11-25 16:20:42,876 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:21:47] 2025-11-25 16:20:42,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:21:47] 2025-11-25 16:20:42,914 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:21:47] 2025-11-25 16:20:42,916 | INFO     | sum of square deviations: 602730024944.0
[2025-11-25 17:21:47] 2025-11-25 16:20:42,928 | INFO     | time since job start (76760s) is within the limit (172800.0s)
[2025-11-25 17:21:47] 2025-11-25 16:20:42,932 | INFO     | monitor loop #5232: job 0:6895324679 is in state 'finished'
[2025-11-25 17:21:47] 2025-11-25 16:20:42,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:21:47] 2025-11-25 16:20:42,965 | INFO     | sum of deviations: 2748089657717.498
[2025-11-25 17:21:47] 2025-11-25 16:20:42,966 | INFO     | mean x: 1764049492.5
[2025-11-25 17:21:47] 2025-11-25 16:20:42,966 | INFO     | mean y: 2805569.090544872
[2025-11-25 17:21:47] 2025-11-25 16:20:42,966 | INFO     | intersect: -8040208658.533937
[2025-11-25 17:21:47] 2025-11-25 16:20:42,967 | INFO     | chi2: 32.94906281358955
[2025-11-25 17:21:47] 2025-11-25 16:20:42,969 | INFO     | sum of square deviations: 595515051688.9807
[2025-11-25 17:21:47] 2025-11-25 16:20:43,009 | INFO     | sum of deviations: 3159171911683.2285
[2025-11-25 17:21:47] 2025-11-25 16:20:43,009 | INFO     | mean x: 1764049340.0040226
[2025-11-25 17:21:47] 2025-11-25 16:20:43,009 | INFO     | mean y: 2814256.155269509
[2025-11-25 17:21:47] 2025-11-25 16:20:43,009 | INFO     | intersect: -9355362518.652126
[2025-11-25 17:21:47] 2025-11-25 16:20:43,011 | INFO     | chi2: 29.63754500342598
[2025-11-25 17:21:47] 2025-11-25 16:20:43,011 | INFO     | current chi2=29.63754500342598 (change=10.05041578541579 %)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,011 | INFO     | right removable region: 1242
[2025-11-25 17:21:47] 2025-11-25 16:20:43,013 | INFO     | sum of square deviations: 595514290408.9812
[2025-11-25 17:21:47] 2025-11-25 16:20:43,060 | INFO     | sum of deviations: 2220749200602.7344
[2025-11-25 17:21:47] 2025-11-25 16:20:43,061 | INFO     | mean x: 1764049645.0040226
[2025-11-25 17:21:47] 2025-11-25 16:20:43,061 | INFO     | mean y: 2816714.053097345
[2025-11-25 17:21:47] 2025-11-25 16:20:43,061 | INFO     | intersect: -6575550761.017554
[2025-11-25 17:21:47] 2025-11-25 16:20:43,062 | INFO     | chi2: 27.927147686193983
[2025-11-25 17:21:47] 2025-11-25 16:20:43,063 | INFO     | current chi2=27.927147686193983 (change=15.241450586340566 %)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,063 | INFO     | left removable region: 10
[2025-11-25 17:21:47] 2025-11-25 16:20:43,064 | INFO     | sum of square deviations: 579843769451.7926
[2025-11-25 17:21:47] 2025-11-25 16:20:43,107 | INFO     | sum of deviations: 2239225951775.985
[2025-11-25 17:21:47] 2025-11-25 16:20:43,108 | INFO     | mean x: 1764049614.512987
[2025-11-25 17:21:47] 2025-11-25 16:20:43,108 | INFO     | mean y: 2837775.563311688
[2025-11-25 17:21:47] 2025-11-25 16:20:43,108 | INFO     | intersect: -6809524252.181662
[2025-11-25 17:21:47] 2025-11-25 16:20:43,109 | INFO     | chi2: 19.70145191594458
[2025-11-25 17:21:47] 2025-11-25 16:20:43,109 | INFO     | current memory leak: 3.86 B/s (using 1232 data points, chi2=19.70)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,111 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | ..............................
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . Timing measurements:
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . get job = 0 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . initial setup = 9 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . payload setup = 186 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . stage-in = 0 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . payload execution = 76251 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . stage-out = 5 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | . log creation = 2 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,112 | INFO     | ..............................
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | job summary report
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | --------------------------------------------------
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | PanDA job id: 6895324679
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | task id: 47556137
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | errors: (none)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | pilot state: finished 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,253 | INFO     | transexitcode: 0
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | exeerrorcode: 0
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | exeerrordiag: 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | exitcode: 0
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | exitmsg: OK
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | cpuconsumptiontime: 308880 s
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | nevents: 1000
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | neventsw: 0
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | pid: 7567
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | pgrp: 7567
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | corecount: 8
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | event service: False
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | sizes: {0: 2284136, 1: 2284335, 12: 2284335, 23: 2284363, 33: 2284391, 44: 2284447, 55: 2284603, 66: 2284631, 76: 2284659, 87: 2284715, 98: 2284743, 100: 2285313, 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,254 | INFO     | --------------------------------------------------
[2025-11-25 17:21:47] 2025-11-25 16:20:43,255 | INFO     | 
[2025-11-25 17:21:47] 2025-11-25 16:20:43,255 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-25 17:21:47] 2025-11-25 16:20:43,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,753 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,753 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | job 6895324679 has completed (purged errors)
[2025-11-25 17:21:47] 2025-11-25 16:20:43,755 | INFO     | overall cleanup function is called
[2025-11-25 17:21:47] 2025-11-25 16:20:44,772 | INFO     | --- collectZombieJob: --- 10, [7567]
[2025-11-25 17:21:47] 2025-11-25 16:20:44,773 | INFO     | zombie collector waiting for pid 7567
[2025-11-25 17:21:47] 2025-11-25 16:20:44,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:21:47] 2025-11-25 16:20:44,773 | INFO     | collected zombie processes
[2025-11-25 17:21:47] 2025-11-25 16:20:44,773 | INFO     | will attempt to kill all subprocesses of pid=7567
[2025-11-25 17:21:47] 2025-11-25 16:20:44,870 | INFO     | process IDs to be killed: [7567] (in reverse order)
[2025-11-25 17:21:47] 2025-11-25 16:20:45,654 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:21:47] 2025-11-25 16:20:45,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:21:47] 2025-11-25 16:20:45,657 | INFO     | did not find any defunct processes belonging to 7567
[2025-11-25 17:21:47] 2025-11-25 16:20:45,660 | INFO     | did not find any defunct processes belonging to 7567
[2025-11-25 17:21:47] 2025-11-25 16:20:45,712 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:21:47] 2025-11-25 16:20:45,712 | INFO     | ready for new job
[2025-11-25 17:21:47] 2025-11-25 16:20:45,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:21:47] 2025-11-25 16:20:45,718 | INFO     | ***************************************
[2025-11-25 17:21:47] 2025-11-25 16:20:45,718 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:21:47] 2025-11-25 16:20:45,718 | INFO     | ***************************************
[2025-11-25 17:21:47] 2025-11-25 16:20:45,718 | INFO     | 
[2025-11-25 17:21:47] 2025-11-25 16:20:45,719 | INFO     | pilot is running in a VM
[2025-11-25 17:21:47] 2025-11-25 16:20:45,719 | INFO     | architecture information:
[2025-11-25 17:21:47] 2025-11-25 16:20:45,734 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:21:47] 2025-11-25 16:20:46,003 | INFO     | cat /etc/os-release:
[2025-11-25 17:21:47] NAME="CentOS Linux"
[2025-11-25 17:21:47] VERSION="7 (Core)"
[2025-11-25 17:21:47] ID="centos"
[2025-11-25 17:21:47] ID_LIKE="rhel fedora"
[2025-11-25 17:21:47] VERSION_ID="7"
[2025-11-25 17:21:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:21:47] ANSI_COLOR="0;31"
[2025-11-25 17:21:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:21:47] HOME_URL="https://www.centos.org/"
[2025-11-25 17:21:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:21:47] 
[2025-11-25 17:21:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:21:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:21:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:21:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:21:47] 
[2025-11-25 17:21:47] 2025-11-25 16:20:46,003 | INFO     | ***************************************
[2025-11-25 17:21:47] 2025-11-25 16:20:46,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-25 17:21:47] 2025-11-25 16:20:46,682 | INFO     | sufficient remaining disk space (495185821696 B)
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | INFO     | update_server=False
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:21:47] 2025-11-25 16:20:46,683 | INFO     | aborting loop
[2025-11-25 17:21:47] 2025-11-25 16:20:46,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:21:47] 2025-11-25 16:20:47,137 | INFO     | all job control threads have been joined
[2025-11-25 17:21:47] 2025-11-25 16:20:47,297 | INFO     | all data control threads have been joined
[2025-11-25 17:21:47] 2025-11-25 16:20:47,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:21:47] 2025-11-25 16:20:47,685 | INFO     | all payload control threads have been joined
[2025-11-25 17:21:47] 2025-11-25 16:20:47,693 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:47,693 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:47,944 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,144 | INFO     | [job] control thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,163 | INFO     | [job] validate thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,191 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:21:47] 2025-11-25 16:20:48,304 | INFO     | [data] control thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,475 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,520 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,626 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,691 | INFO     | [payload] control thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,695 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,939 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:48,963 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:49,275 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:20:51,568 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:21:47] 2025-11-25 16:21:16,135 | INFO     | PID=1079 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 17:21:47] 2025-11-25 16:21:16,135 | INFO     | .. there are 9 such processes running
[2025-11-25 17:21:47] 2025-11-25 16:21:16,136 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:21:47] 2025-11-25 16:21:16,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:21:47] 2025-11-25 16:21:16,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:21:47] 2025-11-25 16:21:35,835 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:21:47] 2025-11-25 16:21:37,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384640325440)>', '<ExcThread(monitor, started 140384084682496)>']
[2025-11-25 17:21:47] 2025-11-25 16:21:38,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:21:47] 2025-11-25 16:21:38,268 | INFO     | [monitor] control thread has ended
[2025-11-25 17:21:47] 2025-11-25 16:21:42,321 | INFO     | all workflow threads have been joined
[2025-11-25 17:21:47] 2025-11-25 16:21:42,321 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:21:47] 2025-11-25 16:21:42,321 | INFO     | traces error code: 0
[2025-11-25 17:21:47] 2025-11-25 16:21:42,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:21:47] 2025-11-25 16:21:42,780 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:21:47] 2025-11-25 16:21:42,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:21:47] 2025-11-25 16:21:42,960 [wrapper] pilotpid: 1079
[2025-11-25 17:21:47] 2025-11-25 16:21:43,068 [wrapper] Pilot exit status: 0
[2025-11-25 17:21:47] 2025-11-25 16:21:43,483 [wrapper] pandaids: 6895324679
[2025-11-25 17:21:47] 2025-11-25 16:21:44,189 [wrapper] cleanup supervisor_pilot  3829 1080
[2025-11-25 17:21:47] 2025-11-25 16:21:44,208 [wrapper] Test setup, not cleaning
[2025-11-25 17:21:47] 2025-11-25 16:21:44,271 [wrapper] apfmon messages muted
[2025-11-25 17:21:47] 2025-11-25 16:21:44,298 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:21:47] 2025-11-25 16:21:44,401 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:21:47]  *** Error codes and diagnostics ***
[2025-11-25 17:21:47]     "exeErrorCode": 0,
[2025-11-25 17:21:47]     "exeErrorDiag": "",
[2025-11-25 17:21:47]     "pilotErrorCode": 0,
[2025-11-25 17:21:47]     "pilotErrorDiag": "",
[2025-11-25 17:21:47]  *** Listing of results directory ***
[2025-11-25 17:21:47] total 1331364
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc    576529 Nov 21 15:24 pilot3.tar.gz
[2025-11-25 17:21:47] -rwx------. 1 boinc boinc     36292 Nov 21 15:32 runpilot2-wrapper.sh
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc      5112 Nov 21 15:32 queuedata.json
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc       100 Nov 24 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:21:47] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 19:56 run_atlas
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc       105 Nov 24 19:56 job.xml
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc 410695237 Nov 24 19:56 EVNT.47483658._000028.pool.root.1
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc     15847 Nov 24 19:56 start_atlas.sh
[2025-11-25 17:21:47] drwxrwx--x. 2 boinc boinc        68 Nov 24 19:56 shared
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc    590101 Nov 24 19:56 input.tar.gz
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc      6392 Nov 24 19:56 init_data.xml
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc         0 Nov 24 19:56 boinc_lockfile
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc      2784 Nov 24 19:57 pandaJob.out
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc    991801 Nov 24 20:01 agis_schedconf.cvmfs.json
[2025-11-25 17:21:47] drwx------. 5 boinc boinc      4096 Nov 24 20:01 pilot3
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc       533 Nov 25 16:47 boinc_task_state.xml
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc 923355150 Nov 25 17:17 HITS.47556137._000280.pool.root.1
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc      1033 Nov 25 17:18 memory_monitor_summary.json
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc   1516240 Nov 25 17:19 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc   2375675 Nov 25 17:19 log.47556137._000280.job.log.tgz.1
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc      8620 Nov 25 17:20 heartbeat.json
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc        95 Nov 25 17:21 pilot_heartbeat.json
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc      8192 Nov 25 17:21 boinc_mmap_file
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc        29 Nov 25 17:21 wrapper_checkpoint.txt
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc      4884 Nov 25 17:21 pilotlog.txt
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc  10306528 Nov 25 17:21 log.47556137._000280.job.log.1
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc       353 Nov 25 17:21 output.list
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc       620 Nov 25 17:21 runtime_log
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc  12697600 Nov 25 17:21 result.tar.gz
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc      8833 Nov 25 17:21 runtime_log.err
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc       662 Nov 25 17:21 DTJKDmHMhg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsfHKDmz25mFo.diag
[2025-11-25 17:21:47] -rw-r--r--. 1 boinc boinc     21502 Nov 25 17:21 stderr.txt
[2025-11-25 17:21:47] HITS file was successfully produced:
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc 923355150 Nov 25 17:17 shared/HITS.pool.root.1
[2025-11-25 17:21:47]  *** Contents of shared directory: ***
[2025-11-25 17:21:47] total 1315784
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc 410695237 Nov 24 19:56 ATLAS.root_0
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc     15847 Nov 24 19:56 start_atlas.sh
[2025-11-25 17:21:47] -rw-r--r--. 2 boinc boinc    590101 Nov 24 19:56 input.tar.gz
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc 923355150 Nov 25 17:17 HITS.pool.root.1
[2025-11-25 17:21:47] -rw-------. 1 boinc boinc  12697600 Nov 25 17:21 result.tar.gz
17:21:49 (29742): run_atlas exited; CPU time 309146.935843
17:21:49 (29742): called boinc_finish(0)

</stderr_txt>
]]>

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