Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:40:09 (546339): wrapper (7.7.26015): starting
06:40:09 (546339): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:40:09] Arguments: --nthreads 4
[2025-11-22 06:40:09] Threads: 4
[2025-11-22 06:40:09] Checking for CVMFS
[2025-11-22 06:40:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:40:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:40:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:40:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:40:10] 2.13.2.0 489841 1 32436 153170 2 88 2208243 4095997 1107 130560 0 129429 99.380 166064 5236 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:40:10] CVMFS is ok
[2025-11-22 06:40:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:40:10] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:40:10] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:40:10] Further information can be found at the LHC@home message board.
[2025-11-22 06:40:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:40:10] Checking for apptainer binary...
[2025-11-22 06:40:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:40:10] Running /usr/bin/apptainer --version
[2025-11-22 06:40:10] apptainer version 1.4.3
[2025-11-22 06:40:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:40:10] SETI64-Ubuntu
[2025-11-22 06:40:10] apptainer works
[2025-11-22 06:40:10] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:40:10] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:40:10] Starting ATLAS job with PandaID=6895324691
[2025-11-22 06:40:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:03:06]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:03:06] 2025-11-22 20:02:15,913 | INFO     | monitor loop #2200: job 0:6895324691 is in state 'finished'
[2025-11-22 15:03:06] 2025-11-22 20:02:15,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,400 | INFO     | time since job start (30117s) is within the limit (172800.0s)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,911 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:03:06] 2025-11-22 20:02:17,924 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2058.174382812501
[2025-11-22 15:03:06] 2025-11-22 20:02:17,938 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/18/PanDA_Pilot-6895324691/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,938 | INFO     | extracted standard info from prmon json
[2025-11-22 15:03:06] 2025-11-22 20:02:17,938 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:03:06] 2025-11-22 20:02:17,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:03:06] 2025-11-22 20:02:17,943 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:03:06] 2025-11-22 20:02:17,944 | INFO     | sum of square deviations: 37381566007.5
[2025-11-22 15:03:06] 2025-11-22 20:02:17,947 | INFO     | sum of deviations: 207788448182.99997
[2025-11-22 15:03:06] 2025-11-22 20:02:17,947 | INFO     | mean x: 1763826679.5
[2025-11-22 15:03:06] 2025-11-22 20:02:17,947 | INFO     | mean y: 2229567.4898785427
[2025-11-22 15:03:06] 2025-11-22 20:02:17,947 | INFO     | intersect: -9802143222.123747
[2025-11-22 15:03:06] 2025-11-22 20:02:17,948 | INFO     | chi2: 6.042544682390882
[2025-11-22 15:03:06] 2025-11-22 20:02:17,948 | INFO     | sum of square deviations: 36257944940.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,951 | INFO     | sum of deviations: 334518860506.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,951 | INFO     | mean x: 1763826527.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,952 | INFO     | mean y: 2246763.5501022497
[2025-11-22 15:03:06] 2025-11-22 20:02:17,952 | INFO     | intersect: -16270965657.029392
[2025-11-22 15:03:06] 2025-11-22 20:02:17,952 | INFO     | chi2: 3.044272439281174
[2025-11-22 15:03:06] 2025-11-22 20:02:17,952 | INFO     | current chi2=3.044272439281174 (change=49.619364037923305 %)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,952 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | sum of deviations: 340167302699.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | mean x: 1763826374.5
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | mean y: 2247534.73553719
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | intersect: -17063909744.532888
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | chi2: 2.968396049624588
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | current chi2=2.968396049624588 (change=2.4924309886832074 %)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,956 | INFO     | right removable region: 483
[2025-11-22 15:03:06] 2025-11-22 20:02:17,957 | INFO     | sum of square deviations: 36257944940.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,960 | INFO     | sum of deviations: 84654888720.99995
[2025-11-22 15:03:06] 2025-11-22 20:02:17,960 | INFO     | mean x: 1763826832.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,960 | INFO     | mean y: 2246254.963190184
[2025-11-22 15:03:06] 2025-11-22 20:02:17,960 | INFO     | intersect: -4115928794.20643
[2025-11-22 15:03:06] 2025-11-22 20:02:17,961 | INFO     | chi2: 3.2202706797567107
[2025-11-22 15:03:06] 2025-11-22 20:02:17,961 | INFO     | current chi2=3.2202706797567107 (change=46.706712998892854 %)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,961 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | sum of deviations: 66086643142.5
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | mean x: 1763826984.5
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | mean y: 2248824.630165289
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | intersect: -3313312156.783766
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | chi2: 3.1809823452340846
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | current chi2=3.1809823452340846 (change=1.2200320541251595 %)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,965 | INFO     | left removable region: 20
[2025-11-22 15:03:06] 2025-11-22 20:02:17,966 | INFO     | sum of square deviations: 30776510072.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | sum of deviations: 171855030197.00003
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | mean x: 1763826954.0
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | mean y: 2271344.5874730023
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | intersect: -9846880938.527592
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | chi2: 0.03863683243863589
[2025-11-22 15:03:06] 2025-11-22 20:02:17,969 | INFO     | current memory leak: 5.58 B/s (using 463 data points, chi2=0.04)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | could have reported an average CPU frequency of 2300 MHz (20 samples)
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | ..............................
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . Timing measurements:
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . get job = 0 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . initial setup = 3 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . payload setup = 4 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . stage-in = 0 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . payload execution = 30084 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . stage-out = 4 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | . log creation = 0 s
[2025-11-22 15:03:06] 2025-11-22 20:02:17,970 | INFO     | ..............................
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | 
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | job summary report
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | --------------------------------------------------
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | PanDA job id: 6895324691
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | task id: 47556137
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | errors: (none)
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | pilot state: finished 
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | transexitcode: 0
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | exeerrorcode: 0
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | exeerrordiag: 
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | exitcode: 0
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | exitmsg: OK
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | cpuconsumptiontime: 118483 s
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | nevents: 1000
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | neventsw: 0
[2025-11-22 15:03:06] 2025-11-22 20:02:18,013 | INFO     | pid: 563852
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | pgrp: 563852
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | corecount: 4
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | event service: False
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | sizes: {0: 2298767, 3: 2299029, 11: 2299057, 30092: 2338112, 30097: 2347136, 30100: 2347192, 30103: 2347566}
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | --------------------------------------------------
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | 
[2025-11-22 15:03:06] 2025-11-22 20:02:18,014 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/18
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | job 6895324691 has completed (purged errors)
[2025-11-22 15:03:06] 2025-11-22 20:02:18,030 | INFO     | overall cleanup function is called
[2025-11-22 15:03:06] 2025-11-22 20:02:19,042 | INFO     | --- collectZombieJob: --- 10, [563852]
[2025-11-22 15:03:06] 2025-11-22 20:02:19,042 | INFO     | zombie collector waiting for pid 563852
[2025-11-22 15:03:06] 2025-11-22 20:02:19,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:03:06] 2025-11-22 20:02:19,042 | INFO     | collected zombie processes
[2025-11-22 15:03:06] 2025-11-22 20:02:19,042 | INFO     | will attempt to kill all subprocesses of pid=563852
[2025-11-22 15:03:06] 2025-11-22 20:02:19,314 | INFO     | process IDs to be killed: [563852] (in reverse order)
[2025-11-22 15:03:06] 2025-11-22 20:02:19,396 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:03:06] 2025-11-22 20:02:19,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:03:06] 2025-11-22 20:02:19,404 | INFO     | did not find any defunct processes belonging to 563852
[2025-11-22 15:03:06] 2025-11-22 20:02:19,412 | INFO     | did not find any defunct processes belonging to 563852
[2025-11-22 15:03:06] 2025-11-22 20:02:19,413 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:03:06] 2025-11-22 20:02:19,413 | INFO     | ready for new job
[2025-11-22 15:03:06] 2025-11-22 20:02:19,413 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:03:06] 2025-11-22 20:02:19,415 | INFO     | ***************************************
[2025-11-22 15:03:06] 2025-11-22 20:02:19,415 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:03:06] 2025-11-22 20:02:19,415 | INFO     | ***************************************
[2025-11-22 15:03:06] 2025-11-22 20:02:19,415 | INFO     | 
[2025-11-22 15:03:06] 2025-11-22 20:02:19,420 | INFO     | architecture information:
[2025-11-22 15:03:06] 2025-11-22 20:02:19,420 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:03:06] 2025-11-22 20:02:19,432 | INFO     | cat /etc/os-release:
[2025-11-22 15:03:06] NAME="CentOS Linux"
[2025-11-22 15:03:06] VERSION="7 (Core)"
[2025-11-22 15:03:06] ID="centos"
[2025-11-22 15:03:06] ID_LIKE="rhel fedora"
[2025-11-22 15:03:06] VERSION_ID="7"
[2025-11-22 15:03:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:03:06] ANSI_COLOR="0;31"
[2025-11-22 15:03:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:03:06] HOME_URL="https://www.centos.org/"
[2025-11-22 15:03:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:03:06] 
[2025-11-22 15:03:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:03:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:03:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:03:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:03:06] 
[2025-11-22 15:03:06] 2025-11-22 20:02:19,432 | INFO     | ***************************************
[2025-11-22 15:03:06] 2025-11-22 20:02:19,935 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/18
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | INFO     | sufficient remaining disk space (367531130880 B)
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | INFO     | update_server=False
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:03:06] 2025-11-22 20:02:19,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:03:06] 2025-11-22 20:02:19,948 | INFO     | aborting loop
[2025-11-22 15:03:06] 2025-11-22 20:02:20,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:03:06] 2025-11-22 20:02:20,221 | INFO     | all data control threads have been joined
[2025-11-22 15:03:06] 2025-11-22 20:02:20,572 | INFO     | all job control threads have been joined
[2025-11-22 15:03:06] 2025-11-22 20:02:20,667 | INFO     | all payload control threads have been joined
[2025-11-22 15:03:06] 2025-11-22 20:02:20,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:03:06] 2025-11-22 20:02:20,952 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:20,953 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:20,953 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,134 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,226 | INFO     | [data] control thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,519 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,577 | INFO     | [job] control thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,672 | INFO     | [payload] control thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:21,797 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:22,035 | INFO     | [job] validate thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:22,187 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:22,191 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:22,215 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:22,455 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:24,760 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:03:06] 2025-11-22 20:02:50,802 | INFO     | PID=550593 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 15:03:06] 2025-11-22 20:02:50,802 | INFO     | .. there are 7 such processes running
[2025-11-22 15:03:06] 2025-11-22 20:02:50,802 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:03:06] 2025-11-22 20:02:50,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:03:06] 2025-11-22 20:02:50,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:03:06] 2025-11-22 20:03:00,466 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:03:06] 2025-11-22 20:03:00,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138695240832832)>', '<ExcThread(monitor, started 138694602245888)>']
[2025-11-22 15:03:06] 2025-11-22 20:03:00,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:03:06] 2025-11-22 20:03:00,853 | INFO     | [monitor] control thread has ended
[2025-11-22 15:03:06] 2025-11-22 20:03:05,857 | INFO     | all workflow threads have been joined
[2025-11-22 15:03:06] 2025-11-22 20:03:05,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:03:06] 2025-11-22 20:03:05,858 | INFO     | traces error code: 0
[2025-11-22 15:03:06] 2025-11-22 20:03:05,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:03:06] 2025-11-22 20:03:05,924 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:03:06] 2025-11-22 20:03:05,926 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:03:06] 2025-11-22 20:03:05,928 [wrapper] pilotpid: 550593
[2025-11-22 15:03:06] 2025-11-22 20:03:05,930 [wrapper] Pilot exit status: 0
[2025-11-22 15:03:06] 2025-11-22 20:03:05,937 [wrapper] pandaids: 6895324691
[2025-11-22 15:03:06] 2025-11-22 20:03:05,996 [wrapper] cleanup supervisor_pilot 1137622 550594
[2025-11-22 15:03:06] 2025-11-22 20:03:05,999 [wrapper] Test setup, not cleaning
[2025-11-22 15:03:06] 2025-11-22 20:03:06,001 [wrapper] apfmon messages muted
[2025-11-22 15:03:06] 2025-11-22 20:03:06,004 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:03:06] 2025-11-22 20:03:06,006 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:03:06]  *** Error codes and diagnostics ***
[2025-11-22 15:03:06]     "exeErrorCode": 0,
[2025-11-22 15:03:06]     "exeErrorDiag": "",
[2025-11-22 15:03:06]     "pilotErrorCode": 0,
[2025-11-22 15:03:06]     "pilotErrorDiag": "",
[2025-11-22 15:03:06]  *** Listing of results directory ***
[2025-11-22 15:03:06] total 1322328
[2025-11-22 15:03:06] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-22 15:03:06] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:35 queuedata.json
[2025-11-22 15:03:06] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:35 runpilot2-wrapper.sh
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:03:06] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:40 run_atlas
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:40 job.xml
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd 411501564 Nov 22 06:40 EVNT.47483658._000030.pool.root.1
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:40 start_atlas.sh
[2025-11-22 15:03:06] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:40 shared
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 06:40 input.tar.gz
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:40 init_data.xml
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:40 boinc_setup_complete
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:40 boinc_lockfile
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd      2783 Nov 22 06:40 pandaJob.out
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:40 agis_schedconf.cvmfs.json
[2025-11-22 15:03:06] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:40 pilot3
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 22 14:56 boinc_task_state.xml
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd 927411972 Nov 22 15:01 HITS.47556137._000292.pool.root.1
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd      1042 Nov 22 15:02 memory_monitor_summary.json
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 15:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd   1328098 Nov 22 15:02 log.47556137._000292.job.log.tgz.1
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd      8580 Nov 22 15:02 heartbeat.json
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd        95 Nov 22 15:02 pilot_heartbeat.json
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 15:03 boinc_mmap_file
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 22 15:03 wrapper_checkpoint.txt
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd      4838 Nov 22 15:03 pilotlog.txt
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd   4283506 Nov 22 15:03 log.47556137._000292.job.log.1
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd       353 Nov 22 15:03 output.list
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 15:03 runtime_log
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd   5632000 Nov 22 15:03 result.tar.gz
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd       661 Nov 22 15:03 t2bKDmyPhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbUJKDmlrKY2n.diag
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 15:03 runtime_log.err
[2025-11-22 15:03:06] -rw-rw-r-- 1 whitlerd whitlerd     21346 Nov 22 15:03 stderr.txt
[2025-11-22 15:03:06] HITS file was successfully produced:
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd 927411972 Nov 22 15:01 shared/HITS.pool.root.1
[2025-11-22 15:03:06]  *** Contents of shared directory: ***
[2025-11-22 15:03:06] total 1313640
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd 411501564 Nov 22 06:40 ATLAS.root_0
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:40 start_atlas.sh
[2025-11-22 15:03:06] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 06:40 input.tar.gz
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd 927411972 Nov 22 15:01 HITS.pool.root.1
[2025-11-22 15:03:06] -rw------- 1 whitlerd whitlerd   5632000 Nov 22 15:03 result.tar.gz
15:03:07 (546339): run_atlas exited; CPU time 119223.181365
15:03:07 (546339): called boinc_finish(0)

</stderr_txt>
]]>

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