Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
04:56:23 (3879073): wrapper (7.7.26015): starting
04:56:23 (3879073): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 04:56:23] Arguments: --nthreads 12
[2025-11-22 04:56:23] Threads: 12
[2025-11-22 04:56:23] Checking for CVMFS
[2025-11-22 04:56:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:56:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:56:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:56:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:56:24] 2.13.2.0 3805062 68 52920 153168 3 56 11647103 16777216 1038 130560 0 74713 99.975 4116 1299 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-22 04:56:24] CVMFS is ok
[2025-11-22 04:56:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:56:24] Checking for apptainer binary...
[2025-11-22 04:56:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 04:56:24] Running /usr/bin/apptainer --version
[2025-11-22 04:56:24] apptainer version 1.3.0-bp160.1.36
[2025-11-22 04:56:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:56:24] boinc-runner
[2025-11-22 04:56:24] apptainer works
[2025-11-22 04:56:24] Set ATHENA_PROC_NUMBER=12
[2025-11-22 04:56:24] Set ATHENA_CORE_NUMBER=12
[2025-11-22 04:56:24] Starting ATLAS job with PandaID=6894245574
[2025-11-22 04:56:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:47:57]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:47:57] 2025-11-22 13:46:55,163 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-6894245574/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:47:57] 2025-11-22 13:46:55,217 | INFO     | number of running child processes to parent process 3890237: 1
[2025-11-22 07:47:57] 2025-11-22 13:46:55,217 | INFO     | maximum number of monitored processes: 17
[2025-11-22 07:47:57] 2025-11-22 13:46:56,560 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 07:47:57] 2025-11-22 13:46:56,563 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4017.9289062500006
[2025-11-22 07:47:57] 2025-11-22 13:46:56,566 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-6894245574/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,566 | INFO     | extracted standard info from prmon json
[2025-11-22 07:47:57] 2025-11-22 13:46:56,566 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:47:57] 2025-11-22 13:46:56,566 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:47:57] 2025-11-22 13:46:56,568 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:47:57] 2025-11-22 13:46:56,568 | INFO     | sum of square deviations: 1470248962.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | sum of deviations: 85442227982.00002
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | mean x: 1763814108.5
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | mean y: 3493539.1904761903
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | intersect: -102499015268.1071
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | chi2: 3.6796311531813037
[2025-11-22 07:47:57] 2025-11-22 13:46:56,569 | INFO     | sum of square deviations: 1342841922.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | sum of deviations: 122333008211.00003
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | mean x: 1763813956.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | mean y: 3537006.2392638037
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | intersect: -160680057709.5537
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | chi2: 1.9481001891308367
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | current chi2=1.9481001891308367 (change=47.05718839654445 %)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | sum of square deviations: 1223016419.5
[2025-11-22 07:47:57] 2025-11-22 13:46:56,570 | INFO     | sum of deviations: 114661621676.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | mean x: 1763813803.5
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | mean y: 3527241.417721519
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | intersect: -165359543784.64844
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | chi2: 1.9484334514359918
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | current chi2=1.9484334514359918 (change=-0.01710704136339912 %)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | right removable region: 157
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | sum of square deviations: 1342841922.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | sum of deviations: 37336326851.99999
[2025-11-22 07:47:57] 2025-11-22 13:46:56,571 | INFO     | mean x: 1763814261.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | mean y: 3550554.8343558284
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | intersect: -49037475552.56686
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | chi2: 1.8024015224079646
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | current chi2=1.8024015224079646 (change=51.016788167758065 %)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | sum of square deviations: 1223016419.5
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | sum of deviations: 30978249394.000004
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | mean x: 1763814413.5
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | mean y: 3558616.1772151897
[2025-11-22 07:47:57] 2025-11-22 13:46:56,572 | INFO     | intersect: -44672769448.553925
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | chi2: 1.8016744948046148
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | current chi2=1.8016744948046148 (change=0.04033660615080146 %)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | left removable region: 20
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | sum of square deviations: 797291228.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | sum of deviations: 46448519662.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | mean x: 1763814383.0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | mean y: 3620347.109489051
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | intersect: -102752517149.10527
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | chi2: 0.008793956871189156
[2025-11-22 07:47:57] 2025-11-22 13:46:56,573 | INFO     | current memory leak: 58.26 B/s (using 137 data points, chi2=0.01)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | could have reported an average CPU frequency of 3997 MHz (9 samples)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | ..............................
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . Timing measurements:
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . get job = 0 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . initial setup = 3 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . payload setup = 3 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . stage-in = 0 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . payload execution = 10197 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . stage-out = 1 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | . log creation = 0 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,574 | INFO     | ..............................
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | 
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | job summary report
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | --------------------------------------------------
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | PanDA job id: 6894245574
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | task id: 47533967
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | errors: (none)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | pilot state: finished 
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | transexitcode: 0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | exeerrorcode: 0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | exeerrordiag: 
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | exitcode: 0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | exitmsg: OK
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | cpuconsumptiontime: 118697 s
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | nevents: 1000
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | neventsw: 0
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | pid: 3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | pgrp: 3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:56,623 | INFO     | corecount: 12
[2025-11-22 07:47:57] 2025-11-22 13:46:56,624 | INFO     | event service: False
[2025-11-22 07:47:57] 2025-11-22 13:46:56,624 | INFO     | sizes: {0: 2298755, 2: 2299017, 11: 2299045, 10204: 2328812, 10205: 2337864, 10209: 2338118}
[2025-11-22 07:47:57] 2025-11-22 13:46:56,624 | INFO     | --------------------------------------------------
[2025-11-22 07:47:57] 2025-11-22 13:46:56,624 | INFO     | 
[2025-11-22 07:47:57] 2025-11-22 13:46:56,624 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:47:57] 2025-11-22 13:46:56,637 | INFO     | job 6894245574 has completed (purged errors)
[2025-11-22 07:47:57] 2025-11-22 13:46:56,637 | INFO     | overall cleanup function is called
[2025-11-22 07:47:57] 2025-11-22 13:46:57,650 | INFO     | --- collectZombieJob: --- 10, [3890237]
[2025-11-22 07:47:57] 2025-11-22 13:46:57,650 | INFO     | zombie collector waiting for pid 3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:57,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:47:57] 2025-11-22 13:46:57,650 | INFO     | collected zombie processes
[2025-11-22 07:47:57] 2025-11-22 13:46:57,650 | INFO     | will attempt to kill all subprocesses of pid=3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:57,715 | INFO     | process IDs to be killed: [3890237] (in reverse order)
[2025-11-22 07:47:57] 2025-11-22 13:46:57,748 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:47:57] 2025-11-22 13:46:57,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:47:57] 2025-11-22 13:46:57,750 | INFO     | did not find any defunct processes belonging to 3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:57,752 | INFO     | did not find any defunct processes belonging to 3890237
[2025-11-22 07:47:57] 2025-11-22 13:46:57,752 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:47:57] 2025-11-22 13:46:57,752 | INFO     | ready for new job
[2025-11-22 07:47:57] 2025-11-22 13:46:57,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:47:57] 2025-11-22 13:46:57,754 | INFO     | ***************************************
[2025-11-22 07:47:57] 2025-11-22 13:46:57,754 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:47:57] 2025-11-22 13:46:57,754 | INFO     | ***************************************
[2025-11-22 07:47:57] 2025-11-22 13:46:57,754 | INFO     | 
[2025-11-22 07:47:57] 2025-11-22 13:46:57,755 | INFO     | architecture information:
[2025-11-22 07:47:57] 2025-11-22 13:46:57,755 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:47:57] 2025-11-22 13:46:57,760 | INFO     | cat /etc/os-release:
[2025-11-22 07:47:57] NAME="CentOS Linux"
[2025-11-22 07:47:57] VERSION="7 (Core)"
[2025-11-22 07:47:57] ID="centos"
[2025-11-22 07:47:57] ID_LIKE="rhel fedora"
[2025-11-22 07:47:57] VERSION_ID="7"
[2025-11-22 07:47:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:47:57] ANSI_COLOR="0;31"
[2025-11-22 07:47:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:47:57] HOME_URL="https://www.centos.org/"
[2025-11-22 07:47:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:47:57] 
[2025-11-22 07:47:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:47:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:47:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:47:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:47:57] 
[2025-11-22 07:47:57] 2025-11-22 13:46:57,760 | INFO     | ***************************************
[2025-11-22 07:47:57] 2025-11-22 13:46:58,263 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | INFO     | sufficient remaining disk space (3858095931392 B)
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | INFO     | update_server=False
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:47:57] 2025-11-22 13:46:58,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:47:57] 2025-11-22 13:46:58,533 | INFO     | all payload control threads have been joined
[2025-11-22 07:47:57] 2025-11-22 13:46:58,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:47:57] 2025-11-22 13:46:58,724 | INFO     | aborting loop
[2025-11-22 07:47:57] 2025-11-22 13:46:58,968 | INFO     | all data control threads have been joined
[2025-11-22 07:47:57] 2025-11-22 13:46:59,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:47:57] 2025-11-22 13:46:59,064 | INFO     | all job control threads have been joined
[2025-11-22 07:47:57] 2025-11-22 13:46:59,277 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:46:59,277 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:46:59,538 | INFO     | [payload] control thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:46:59,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:47:57] 2025-11-22 13:46:59,729 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:46:59,825 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:46:59,973 | INFO     | [data] control thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,069 | INFO     | [job] control thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,072 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,285 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,553 | INFO     | [job] validate thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,632 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,703 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:00,870 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:01,017 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:03,556 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:47:57] 2025-11-22 13:47:28,061 | INFO     | PID=3883336 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:47:57] 2025-11-22 13:47:28,061 | INFO     | .. there are 2 such processes running
[2025-11-22 07:47:57] 2025-11-22 13:47:28,061 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:47:57] 2025-11-22 13:47:28,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:47:57] 2025-11-22 13:47:28,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:47:57] 2025-11-22 13:47:51,110 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:47:57] 2025-11-22 13:47:52,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660705400640)>', '<ExcThread(monitor, started 139659854214912)>']
[2025-11-22 07:47:57] 2025-11-22 13:47:53,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:47:57] 2025-11-22 13:47:53,184 | INFO     | [monitor] control thread has ended
[2025-11-22 07:47:57] 2025-11-22 13:47:57,799 | INFO     | all workflow threads have been joined
[2025-11-22 07:47:57] 2025-11-22 13:47:57,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:47:57] 2025-11-22 13:47:57,799 | INFO     | traces error code: 0
[2025-11-22 07:47:57] 2025-11-22 13:47:57,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:47:57] 2025-11-22 13:47:57,865 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:47:57] 2025-11-22 13:47:57,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:47:57] 2025-11-22 13:47:57,868 [wrapper] pilotpid: 3883336
[2025-11-22 07:47:57] 2025-11-22 13:47:57,870 [wrapper] Pilot exit status: 0
[2025-11-22 07:47:57] 2025-11-22 13:47:57,874 [wrapper] pandaids: 6894245574
[2025-11-22 07:47:57] 2025-11-22 13:47:57,891 [wrapper] cleanup supervisor_pilot 4065061 3883337
[2025-11-22 07:47:57] 2025-11-22 13:47:57,892 [wrapper] Test setup, not cleaning
[2025-11-22 07:47:57] 2025-11-22 13:47:57,894 [wrapper] apfmon messages muted
[2025-11-22 07:47:57] 2025-11-22 13:47:57,895 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:47:57] 2025-11-22 13:47:57,897 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:47:57]  *** Error codes and diagnostics ***
[2025-11-22 07:47:57]     "exeErrorCode": 0,
[2025-11-22 07:47:57]     "exeErrorDiag": "",
[2025-11-22 07:47:57]     "pilotErrorCode": 0,
[2025-11-22 07:47:57]     "pilotErrorDiag": "",
[2025-11-22 07:47:57]  *** Listing of results directory ***
[2025-11-22 07:47:57] total 1312216
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:08 pilot3.tar.gz
[2025-11-22 07:47:57] -rwx------. 1 boinc boinc     36292 Nov 20 19:11 runpilot2-wrapper.sh
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:11 queuedata.json
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc       100 Nov 22 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:47:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 04:56 run_atlas
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc       105 Nov 22 04:56 job.xml
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc 411870573 Nov 22 04:56 EVNT.47493127._002076.pool.root.1
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc     15847 Nov 22 04:56 start_atlas.sh
[2025-11-22 07:47:57] drwxrwx--x. 1 boinc boinc        76 Nov 22 04:56 shared
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc    590100 Nov 22 04:56 input.tar.gz
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc     10033 Nov 22 04:56 init_data.xml
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc         0 Nov 22 04:56 boinc_setup_complete
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc         0 Nov 22 04:56 boinc_lockfile
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc      2784 Nov 22 04:56 pandaJob.out
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc        63 Nov 22 04:56 setup.sh.local
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc    989768 Nov 22 04:56 agis_schedconf.cvmfs.json
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc   1526164 Nov 22 04:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:47:57] drwx------. 1 boinc boinc       414 Nov 22 04:56 pilot3
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc       532 Nov 22 07:43 boinc_task_state.xml
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc 921043182 Nov 22 07:46 HITS.47533967._000480.pool.root.1
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc        95 Nov 22 07:46 pilot_heartbeat.json
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc      1043 Nov 22 07:46 memory_monitor_summary.json
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc   1935189 Nov 22 07:46 log.47533967._000480.job.log.tgz.1
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc      8612 Nov 22 07:46 heartbeat.json
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc      4826 Nov 22 07:47 pilotlog.txt
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc      8192 Nov 22 07:47 boinc_mmap_file
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc        29 Nov 22 07:47 wrapper_checkpoint.txt
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc   1503919 Nov 22 07:47 log.47533967._000480.job.log.1
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc       353 Nov 22 07:47 output.list
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc       620 Nov 22 07:47 runtime_log
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc   3461120 Nov 22 07:47 result.tar.gz
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc      9415 Nov 22 07:47 runtime_log.err
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc       660 Nov 22 07:47 HzSMDmHrUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvEHKDmY0CW0n.diag
[2025-11-22 07:47:57] -rw-r--r--. 1 boinc boinc     20950 Nov 22 07:47 stderr.txt
[2025-11-22 07:47:57] HITS file was successfully produced:
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc 921043182 Nov 22 07:46 shared/HITS.pool.root.1
[2025-11-22 07:47:57]  *** Contents of shared directory: ***
[2025-11-22 07:47:57] total 1305656
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc 411870573 Nov 22 04:56 ATLAS.root_0
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc     15847 Nov 22 04:56 start_atlas.sh
[2025-11-22 07:47:57] -rw-r--r--. 2 boinc boinc    590100 Nov 22 04:56 input.tar.gz
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc 921043182 Nov 22 07:46 HITS.pool.root.1
[2025-11-22 07:47:57] -rw-------. 1 boinc boinc   3461120 Nov 22 07:47 result.tar.gz
07:47:59 (3879073): run_atlas exited; CPU time 118571.123556
07:47:59 (3879073): called boinc_finish(0)

</stderr_txt>
]]>

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