Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:44:27 (640462): wrapper (7.7.26015): starting
06:44:27 (640462): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:44:27] Arguments: --nthreads 4
[2025-11-22 06:44:27] Threads: 4
[2025-11-22 06:44:27] Checking for CVMFS
[2025-11-22 06:44:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:44:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:44:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:44:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:44:28] 2.13.2.0 489841 5 49676 153170 2 89 2506965 4096001 5926 130560 0 408227 99.206 277522 2121 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:44:28] CVMFS is ok
[2025-11-22 06:44:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:44:28] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:44:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:44:28] Further information can be found at the LHC@home message board.
[2025-11-22 06:44:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:44:28] Checking for apptainer binary...
[2025-11-22 06:44:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:44:28] Running /usr/bin/apptainer --version
[2025-11-22 06:44:28] apptainer version 1.4.3
[2025-11-22 06:44:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:44:28] SETI64-Ubuntu
[2025-11-22 06:44:28] apptainer works
[2025-11-22 06:44:28] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:44:28] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:44:28] Starting ATLAS job with PandaID=6895324439
[2025-11-22 06:44:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:57:23]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:57:23] 2025-11-22 19:56:50,246 | INFO     | time since job start (29532s) is within the limit (172800.0s)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:57:23] 2025-11-22 19:56:50,322 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 1890.07959375
[2025-11-22 14:57:23] 2025-11-22 19:56:50,334 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/23/PanDA_Pilot-6895324439/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,334 | INFO     | extracted standard info from prmon json
[2025-11-22 14:57:23] 2025-11-22 19:56:50,334 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:57:23] 2025-11-22 19:56:50,334 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:57:23] 2025-11-22 19:56:50,338 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:57:23] 2025-11-22 19:56:50,338 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,341 | INFO     | sum of deviations: 210964463325.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,341 | INFO     | mean x: 1763826632.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,342 | INFO     | mean y: 2240627.826446281
[2025-11-22 14:57:23] 2025-11-22 19:56:50,342 | INFO     | intersect: -10581825534.642859
[2025-11-22 14:57:23] 2025-11-22 19:56:50,342 | INFO     | chi2: 3.3456530413710595
[2025-11-22 14:57:23] 2025-11-22 19:56:50,342 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | sum of deviations: 285770680615.99994
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | mean x: 1763826480.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | mean y: 2251171.5949895615
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | intersect: -14788507669.905048
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | chi2: 1.7778297433381793
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | current chi2=1.7778297433381793 (change=46.86150293069185 %)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,345 | INFO     | sum of square deviations: 33022619162.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,348 | INFO     | sum of deviations: 280846720020.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,348 | INFO     | mean x: 1763826327.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,348 | INFO     | mean y: 2250460.4156118142
[2025-11-22 14:57:23] 2025-11-22 19:56:50,348 | INFO     | intersect: -14998523291.858656
[2025-11-22 14:57:23] 2025-11-22 19:56:50,348 | INFO     | chi2: 1.7764248720612288
[2025-11-22 14:57:23] 2025-11-22 19:56:50,349 | INFO     | current chi2=1.7764248720612288 (change=0.0790216994745887 %)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,349 | INFO     | right removable region: 473
[2025-11-22 14:57:23] 2025-11-22 19:56:50,349 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | sum of deviations: 130144105974.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | mean x: 1763826785.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | mean y: 2252013.008350731
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | intersect: -6733674901.58164
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | chi2: 1.643982780280146
[2025-11-22 14:57:23] 2025-11-22 19:56:50,352 | INFO     | current chi2=1.643982780280146 (change=50.862125870456765 %)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,353 | INFO     | sum of square deviations: 33022619162.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,355 | INFO     | sum of deviations: 116351878361.99994
[2025-11-22 14:57:23] 2025-11-22 19:56:50,355 | INFO     | mean x: 1763826937.5
[2025-11-22 14:57:23] 2025-11-22 19:56:50,355 | INFO     | mean y: 2254003.835443038
[2025-11-22 14:57:23] 2025-11-22 19:56:50,355 | INFO     | intersect: -6212412866.582542
[2025-11-22 14:57:23] 2025-11-22 19:56:50,355 | INFO     | chi2: 1.6285404900299585
[2025-11-22 14:57:23] 2025-11-22 19:56:50,356 | INFO     | current chi2=1.6285404900299585 (change=0.9393218977364316 %)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,356 | INFO     | left removable region: 20
[2025-11-22 14:57:23] 2025-11-22 19:56:50,356 | INFO     | sum of square deviations: 28825106042.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,358 | INFO     | sum of deviations: 163526298329.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,358 | INFO     | mean x: 1763826907.0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,358 | INFO     | mean y: 2267693.8741721855
[2025-11-22 14:57:23] 2025-11-22 19:56:50,358 | INFO     | intersect: -10004012407.039787
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | chi2: 0.03461161138372849
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | current memory leak: 5.67 B/s (using 453 data points, chi2=0.03)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | could have reported an average CPU frequency of 2288 MHz (20 samples)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | ..............................
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . Timing measurements:
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . get job = 0 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . initial setup = 3 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . payload setup = 4 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . stage-in = 0 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . payload execution = 29499 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . stage-out = 3 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | . log creation = 0 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,359 | INFO     | ..............................
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | 
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | job summary report
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | --------------------------------------------------
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | PanDA job id: 6895324439
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | task id: 47556137
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | errors: (none)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | pilot state: finished 
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | transexitcode: 0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | exeerrorcode: 0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | exeerrordiag: 
[2025-11-22 14:57:23] 2025-11-22 19:56:50,401 | INFO     | exitcode: 0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | exitmsg: OK
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | cpuconsumptiontime: 117150 s
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | nevents: 1000
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | neventsw: 0
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | pid: 661825
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | pgrp: 661825
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | corecount: 4
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | event service: False
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | sizes: {0: 2298818, 3: 2299080, 10: 2299108, 29507: 2337895, 29511: 2346919, 29514: 2346975, 29518: 2347349}
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | --------------------------------------------------
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | 
[2025-11-22 14:57:23] 2025-11-22 19:56:50,402 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/23
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | job 6895324439 has completed (purged errors)
[2025-11-22 14:57:23] 2025-11-22 19:56:50,420 | INFO     | overall cleanup function is called
[2025-11-22 14:57:23] 2025-11-22 19:56:51,432 | INFO     | --- collectZombieJob: --- 10, [661825]
[2025-11-22 14:57:23] 2025-11-22 19:56:51,432 | INFO     | zombie collector waiting for pid 661825
[2025-11-22 14:57:23] 2025-11-22 19:56:51,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:57:23] 2025-11-22 19:56:51,433 | INFO     | collected zombie processes
[2025-11-22 14:57:23] 2025-11-22 19:56:51,433 | INFO     | will attempt to kill all subprocesses of pid=661825
[2025-11-22 14:57:23] 2025-11-22 19:56:51,720 | INFO     | process IDs to be killed: [661825] (in reverse order)
[2025-11-22 14:57:23] 2025-11-22 19:56:51,799 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:57:23] 2025-11-22 19:56:51,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:57:23] 2025-11-22 19:56:51,807 | INFO     | did not find any defunct processes belonging to 661825
[2025-11-22 14:57:23] 2025-11-22 19:56:51,815 | INFO     | did not find any defunct processes belonging to 661825
[2025-11-22 14:57:23] 2025-11-22 19:56:51,815 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:57:23] 2025-11-22 19:56:51,816 | INFO     | ready for new job
[2025-11-22 14:57:23] 2025-11-22 19:56:51,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:57:23] 2025-11-22 19:56:51,817 | INFO     | ***************************************
[2025-11-22 14:57:23] 2025-11-22 19:56:51,818 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:57:23] 2025-11-22 19:56:51,818 | INFO     | ***************************************
[2025-11-22 14:57:23] 2025-11-22 19:56:51,818 | INFO     | 
[2025-11-22 14:57:23] 2025-11-22 19:56:51,823 | INFO     | architecture information:
[2025-11-22 14:57:23] 2025-11-22 19:56:51,823 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:57:23] 2025-11-22 19:56:51,834 | INFO     | cat /etc/os-release:
[2025-11-22 14:57:23] NAME="CentOS Linux"
[2025-11-22 14:57:23] VERSION="7 (Core)"
[2025-11-22 14:57:23] ID="centos"
[2025-11-22 14:57:23] ID_LIKE="rhel fedora"
[2025-11-22 14:57:23] VERSION_ID="7"
[2025-11-22 14:57:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:57:23] ANSI_COLOR="0;31"
[2025-11-22 14:57:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:57:23] HOME_URL="https://www.centos.org/"
[2025-11-22 14:57:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:57:23] 
[2025-11-22 14:57:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:57:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:57:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:57:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:57:23] 
[2025-11-22 14:57:23] 2025-11-22 19:56:51,835 | INFO     | ***************************************
[2025-11-22 14:57:23] 2025-11-22 19:56:52,337 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/23
[2025-11-22 14:57:23] 2025-11-22 19:56:52,350 | INFO     | sufficient remaining disk space (367358115840 B)
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | INFO     | update_server=False
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:57:23] 2025-11-22 19:56:52,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:57:23] 2025-11-22 19:56:52,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:57:23] 2025-11-22 19:56:52,352 | INFO     | aborting loop
[2025-11-22 14:57:23] 2025-11-22 19:56:52,475 | INFO     | all data control threads have been joined
[2025-11-22 14:57:23] 2025-11-22 19:56:52,740 | INFO     | all job control threads have been joined
[2025-11-22 14:57:23] 2025-11-22 19:56:52,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:57:23] 2025-11-22 19:56:53,356 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,357 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,357 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,480 | INFO     | [data] control thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,687 | INFO     | [job] validate thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,746 | INFO     | [job] control thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,747 | INFO     | all payload control threads have been joined
[2025-11-22 14:57:23] 2025-11-22 19:56:53,819 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:53,956 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:54,244 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:54,357 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:54,463 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:54,749 | INFO     | [payload] control thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:56:56,925 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:57:02,466 | INFO     | job.realtimelogging is not enabled
[2025-11-22 14:57:23] 2025-11-22 19:57:03,471 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:57:23] 2025-11-22 19:57:16,547 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:57:23] 2025-11-22 19:57:17,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131266546734912)>', '<ExcThread(monitor, started 131265382565632)>']
[2025-11-22 14:57:23] 2025-11-22 19:57:22,121 | INFO     | all workflow threads have been joined
[2025-11-22 14:57:23] 2025-11-22 19:57:22,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:57:23] 2025-11-22 19:57:22,122 | INFO     | traces error code: 0
[2025-11-22 14:57:23] 2025-11-22 19:57:22,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:57:23] 2025-11-22 19:57:22,319 | INFO     | 29537s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | INFO     | PID=646870 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | INFO     | .. there are 6 such processes running
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:57:23] 2025-11-22 19:57:23,646 | INFO     | [monitor] control thread has ended
[2025-11-22 14:57:23] 2025-11-22 19:57:23,712 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:57:23] 2025-11-22 19:57:23,715 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:57:23] 2025-11-22 19:57:23,717 [wrapper] pilotpid: 646870
[2025-11-22 14:57:23] 2025-11-22 19:57:23,720 [wrapper] Pilot exit status: 0
[2025-11-22 14:57:23] 2025-11-22 19:57:23,727 [wrapper] pandaids: 6895324439
[2025-11-22 14:57:23] 2025-11-22 19:57:23,782 [wrapper] cleanup supervisor_pilot 1120239 646871
[2025-11-22 14:57:23] 2025-11-22 19:57:23,785 [wrapper] Test setup, not cleaning
[2025-11-22 14:57:23] 2025-11-22 19:57:23,787 [wrapper] apfmon messages muted
[2025-11-22 14:57:23] 2025-11-22 19:57:23,790 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:57:23] 2025-11-22 19:57:23,792 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:57:23]  *** Error codes and diagnostics ***
[2025-11-22 14:57:23]     "exeErrorCode": 0,
[2025-11-22 14:57:23]     "exeErrorDiag": "",
[2025-11-22 14:57:23]     "pilotErrorCode": 0,
[2025-11-22 14:57:23]     "pilotErrorDiag": "",
[2025-11-22 14:57:23]  *** Listing of results directory ***
[2025-11-22 14:57:23] total 1313324
[2025-11-22 14:57:23] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-22 14:57:23] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:21 queuedata.json
[2025-11-22 14:57:23] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:24 runpilot2-wrapper.sh
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:57:23] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:44 run_atlas
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:44 job.xml
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd 410063114 Nov 22 06:44 EVNT.47483658._000024.pool.root.1
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:44 start_atlas.sh
[2025-11-22 14:57:23] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:44 shared
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd    590098 Nov 22 06:44 input.tar.gz
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:44 init_data.xml
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:44 boinc_setup_complete
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:44 boinc_lockfile
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 22 06:44 pandaJob.out
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:44 agis_schedconf.cvmfs.json
[2025-11-22 14:57:23] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:44 pilot3
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 22 14:52 boinc_task_state.xml
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd 919834985 Nov 22 14:56 HITS.47556137._000239.pool.root.1
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd      1042 Nov 22 14:56 memory_monitor_summary.json
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd        95 Nov 22 14:56 pilot_heartbeat.json
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 14:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd   1314919 Nov 22 14:56 log.47556137._000239.job.log.tgz.1
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd      8583 Nov 22 14:56 heartbeat.json
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 14:57 boinc_mmap_file
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd        28 Nov 22 14:57 wrapper_checkpoint.txt
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd       937 Nov 22 14:57 pilotlog.txt
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd   4193595 Nov 22 14:57 log.47556137._000239.job.log.1
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd       353 Nov 22 14:57 output.list
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 14:57 runtime_log
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd   5529600 Nov 22 14:57 result.tar.gz
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 14:57 runtime_log.err
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd       661 Nov 22 14:57 GS5KDmiEhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsTJKDmFeeO7m.diag
[2025-11-22 14:57:23] -rw-rw-r-- 1 whitlerd whitlerd     21319 Nov 22 14:57 stderr.txt
[2025-11-22 14:57:23] HITS file was successfully produced:
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd 919834985 Nov 22 14:56 shared/HITS.pool.root.1
[2025-11-22 14:57:23]  *** Contents of shared directory: ***
[2025-11-22 14:57:23] total 1304740
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd 410063114 Nov 22 06:44 ATLAS.root_0
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:44 start_atlas.sh
[2025-11-22 14:57:23] -rw-r--r-- 2 whitlerd whitlerd    590098 Nov 22 06:44 input.tar.gz
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd 919834985 Nov 22 14:56 HITS.pool.root.1
[2025-11-22 14:57:23] -rw------- 1 whitlerd whitlerd   5529600 Nov 22 14:57 result.tar.gz
14:57:25 (640462): run_atlas exited; CPU time 117861.674453
14:57:25 (640462): called boinc_finish(0)

</stderr_txt>
]]>

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