Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:38:32 (19232): wrapper (7.7.26015): starting
07:38:32 (19232): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 07:38:32] Arguments: --nthreads 8
[2025-11-22 07:38:32] Threads: 8
[2025-11-22 07:38:32] Checking for CVMFS
[2025-11-22 07:38:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:38:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:38:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:38:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:38:32] 2.11.2.0 2989 67552 80652 153172 1 81 20117677 20275201 1 130560 0 19046748 99.880 3573485 29100 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:38:32] CVMFS is ok
[2025-11-22 07:38:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:38:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:38:32] Further information can be found at the LHC@home message board.
[2025-11-22 07:38:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:38:32] Checking for apptainer binary...
[2025-11-22 07:38:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:38:32] Running /usr/bin/apptainer --version
[2025-11-22 07:38:32] apptainer version 1.3.2-1.el7
[2025-11-22 07:38:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:38:34] c-204-24.aglt2.org
[2025-11-22 07:38:34] apptainer works
[2025-11-22 07:38:34] Set ATHENA_PROC_NUMBER=8
[2025-11-22 07:38:34] Set ATHENA_CORE_NUMBER=8
[2025-11-22 07:38:34] Starting ATLAS job with PandaID=6895324215
[2025-11-22 07:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:11:59 (28170): wrapper (7.7.26015): starting
20:11:59 (28170): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 20:11:59] Arguments: --nthreads 8
[2025-11-22 20:11:59] Threads: 8
[2025-11-22 20:11:59] This job has been restarted, cleaning up previous attempt
[2025-11-22 20:11:59] Checking for CVMFS
[2025-11-22 20:11:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:12:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:12:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:12:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:12:00] 2.11.2.0 2989 68305 82052 153191 1 56 10823558 20275200 1 130560 0 19281679 99.881 3599795 29146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 20:12:00] CVMFS is ok
[2025-11-22 20:12:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:12:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:12:00] Further information can be found at the LHC@home message board.
[2025-11-22 20:12:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:12:00] Checking for apptainer binary...
[2025-11-22 20:12:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:12:00] Running /usr/bin/apptainer --version
[2025-11-22 20:12:00] apptainer version 1.3.2-1.el7
[2025-11-22 20:12:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:12:02] c-204-24.aglt2.org
[2025-11-22 20:12:02] apptainer works
[2025-11-22 20:12:02] Set ATHENA_PROC_NUMBER=8
[2025-11-22 20:12:02] Set ATHENA_CORE_NUMBER=8
[2025-11-22 20:12:02] Starting ATLAS job with PandaID=6895324215
[2025-11-22 20:12:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:49:40]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:49:40] 2025-11-23 13:49:23,786 | INFO     | time since job start (45423s) is within the limit (172800.0s)
[2025-11-23 08:49:40] 2025-11-23 13:49:24,633 | INFO     | monitor loop #3348: job 0:6895324215 is in state 'finished'
[2025-11-23 08:49:40] 2025-11-23 13:49:24,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,791 | INFO     | time since job start (45425s) is within the limit (172800.0s)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,838 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 08:49:40] 2025-11-23 13:49:25,842 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-23 08:49:40] 2025-11-23 13:49:25,844 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895324215/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,846 | INFO     | extracted standard info from prmon json
[2025-11-23 08:49:40] 2025-11-23 13:49:25,846 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:49:40] 2025-11-23 13:49:25,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:49:40] 2025-11-23 13:49:25,861 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:49:40] 2025-11-23 13:49:25,862 | INFO     | sum of square deviations: 127701390073.39798
[2025-11-23 08:49:40] 2025-11-23 13:49:25,873 | INFO     | sum of deviations: 791886739319.5349
[2025-11-23 08:49:40] 2025-11-23 13:49:25,873 | INFO     | mean x: 1763883035.0591397
[2025-11-23 08:49:40] 2025-11-23 13:49:25,874 | INFO     | mean y: 2866055.9650537632
[2025-11-23 08:49:40] 2025-11-23 13:49:25,874 | INFO     | intersect: -10935116564.045593
[2025-11-23 08:49:40] 2025-11-23 13:49:25,875 | INFO     | chi2: 5.829819997896774
[2025-11-23 08:49:40] 2025-11-23 13:49:25,875 | INFO     | sum of square deviations: 125144148071.82443
[2025-11-23 08:49:40] 2025-11-23 13:49:25,888 | INFO     | sum of deviations: 1022461342644.0586
[2025-11-23 08:49:40] 2025-11-23 13:49:25,888 | INFO     | mean x: 1763882882.562923
[2025-11-23 08:49:40] 2025-11-23 13:49:25,888 | INFO     | mean y: 2879801.213802436
[2025-11-23 08:49:40] 2025-11-23 13:49:25,888 | INFO     | intersect: -14408517680.489202
[2025-11-23 08:49:40] 2025-11-23 13:49:25,889 | INFO     | chi2: 3.0050740370705467
[2025-11-23 08:49:40] 2025-11-23 13:49:25,889 | INFO     | current chi2=3.0050740370705467 (change=48.45339927897108 %)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,890 | INFO     | sum of square deviations: 122621278807.729
[2025-11-23 08:49:40] 2025-11-23 13:49:25,901 | INFO     | sum of deviations: 1120712942592.303
[2025-11-23 08:49:40] 2025-11-23 13:49:25,902 | INFO     | mean x: 1763882730.0667574
[2025-11-23 08:49:40] 2025-11-23 13:49:25,902 | INFO     | mean y: 2885735.463215259
[2025-11-23 08:49:40] 2025-11-23 13:49:25,902 | INFO     | intersect: -16118347251.353912
[2025-11-23 08:49:40] 2025-11-23 13:49:25,903 | INFO     | chi2: 2.3922216419780895
[2025-11-23 08:49:40] 2025-11-23 13:49:25,903 | INFO     | current chi2=2.3922216419780895 (change=20.393920001048876 %)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,903 | INFO     | right removable region: 733
[2025-11-23 08:49:40] 2025-11-23 13:49:25,904 | INFO     | sum of square deviations: 125143894311.82428
[2025-11-23 08:49:40] 2025-11-23 13:49:25,915 | INFO     | sum of deviations: 588562241773.7676
[2025-11-23 08:49:40] 2025-11-23 13:49:25,916 | INFO     | mean x: 1763883187.562923
[2025-11-23 08:49:40] 2025-11-23 13:49:25,916 | INFO     | mean y: 2878161.1447902573
[2025-11-23 08:49:40] 2025-11-23 13:49:25,916 | INFO     | intersect: -8292812561.986257
[2025-11-23 08:49:40] 2025-11-23 13:49:25,917 | INFO     | chi2: 3.6143113009154213
[2025-11-23 08:49:40] 2025-11-23 13:49:25,917 | INFO     | current chi2=3.6143113009154213 (change=38.00303779157234 %)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,918 | INFO     | sum of square deviations: 122620816610.86104
[2025-11-23 08:49:40] 2025-11-23 13:49:25,929 | INFO     | sum of deviations: 541288627170.06836
[2025-11-23 08:49:40] 2025-11-23 13:49:25,929 | INFO     | mean x: 1763883340.065395
[2025-11-23 08:49:40] 2025-11-23 13:49:25,929 | INFO     | mean y: 2881017.144414169
[2025-11-23 08:49:40] 2025-11-23 13:49:25,930 | INFO     | intersect: -7783480369.292353
[2025-11-23 08:49:40] 2025-11-23 13:49:25,930 | INFO     | chi2: 3.5573337618413783
[2025-11-23 08:49:40] 2025-11-23 13:49:25,930 | INFO     | current chi2=3.5573337618413783 (change=1.5764424901532947 %)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,931 | INFO     | left removable region: 20
[2025-11-23 08:49:40] 2025-11-23 13:49:25,931 | INFO     | sum of square deviations: 112394579178.23471
[2025-11-23 08:49:40] 2025-11-23 13:49:25,942 | INFO     | sum of deviations: 816171192321.2845
[2025-11-23 08:49:40] 2025-11-23 13:49:25,942 | INFO     | mean x: 1763883309.575035
[2025-11-23 08:49:40] 2025-11-23 13:49:25,942 | INFO     | mean y: 2905197.6115007014
[2025-11-23 08:49:40] 2025-11-23 13:49:25,942 | INFO     | intersect: -12805815244.39942
[2025-11-23 08:49:40] 2025-11-23 13:49:25,943 | INFO     | chi2: 0.06645722831921312
[2025-11-23 08:49:40] 2025-11-23 13:49:25,943 | INFO     | current memory leak: 7.26 B/s (using 713 data points, chi2=0.07)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,944 | INFO     | could have reported an average CPU frequency of 2161 MHz (28 samples)
[2025-11-23 08:49:40] 2025-11-23 13:49:25,944 | INFO     | ..............................
[2025-11-23 08:49:40] 2025-11-23 13:49:25,944 | INFO     | . Timing measurements:
[2025-11-23 08:49:40] 2025-11-23 13:49:25,944 | INFO     | . get job = 0 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,944 | INFO     | . initial setup = 2 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | . payload setup = 9 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | . stage-in = 0 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | . payload execution = 45381 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | . stage-out = 3 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | . log creation = 0 s
[2025-11-23 08:49:40] 2025-11-23 13:49:25,945 | INFO     | ..............................
[2025-11-23 08:49:40] 2025-11-23 13:49:26,035 | INFO     | 
[2025-11-23 08:49:40] 2025-11-23 13:49:26,036 | INFO     | job summary report
[2025-11-23 08:49:40] 2025-11-23 13:49:26,036 | INFO     | --------------------------------------------------
[2025-11-23 08:49:40] 2025-11-23 13:49:26,036 | INFO     | PanDA job id: 6895324215
[2025-11-23 08:49:40] 2025-11-23 13:49:26,036 | INFO     | task id: 47556137
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | errors: (none)
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | pilot state: finished 
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | transexitcode: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | exeerrorcode: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:26,037 | INFO     | exeerrordiag: 
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | exitcode: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | exitmsg: OK
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | cpuconsumptiontime: 348884 s
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | nevents: 1000
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | neventsw: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:26,038 | INFO     | pid: 6003
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | pgrp: 6003
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | corecount: 8
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | event service: False
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | sizes: {0: 2297975, 1: 2298831, 7: 2299093, 12: 2299121, 45394: 2345240, 45399: 2354418, 45408: 2354608}
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | --------------------------------------------------
[2025-11-23 08:49:40] 2025-11-23 13:49:26,039 | INFO     | 
[2025-11-23 08:49:40] 2025-11-23 13:49:26,040 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 08:49:40] 2025-11-23 13:49:26,067 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,068 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,068 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,068 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,070 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:49:40] 2025-11-23 13:49:26,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:49:40] 2025-11-23 13:49:26,071 | INFO     | job 6895324215 has completed (purged errors)
[2025-11-23 08:49:40] 2025-11-23 13:49:26,072 | INFO     | overall cleanup function is called
[2025-11-23 08:49:40] 2025-11-23 13:49:27,088 | INFO     | --- collectZombieJob: --- 10, [6003]
[2025-11-23 08:49:40] 2025-11-23 13:49:27,088 | INFO     | zombie collector waiting for pid 6003
[2025-11-23 08:49:40] 2025-11-23 13:49:27,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:49:40] 2025-11-23 13:49:27,089 | INFO     | collected zombie processes
[2025-11-23 08:49:40] 2025-11-23 13:49:27,089 | INFO     | will attempt to kill all subprocesses of pid=6003
[2025-11-23 08:49:40] 2025-11-23 13:49:27,177 | INFO     | process IDs to be killed: [6003] (in reverse order)
[2025-11-23 08:49:40] 2025-11-23 13:49:27,236 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:49:40] 2025-11-23 13:49:27,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:49:40] 2025-11-23 13:49:27,241 | INFO     | did not find any defunct processes belonging to 6003
[2025-11-23 08:49:40] 2025-11-23 13:49:27,243 | INFO     | did not find any defunct processes belonging to 6003
[2025-11-23 08:49:40] 2025-11-23 13:49:27,246 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:49:40] 2025-11-23 13:49:27,246 | INFO     | ready for new job
[2025-11-23 08:49:40] 2025-11-23 13:49:27,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:49:40] 2025-11-23 13:49:27,250 | INFO     | ***************************************
[2025-11-23 08:49:40] 2025-11-23 13:49:27,250 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:49:40] 2025-11-23 13:49:27,250 | INFO     | ***************************************
[2025-11-23 08:49:40] 2025-11-23 13:49:27,250 | INFO     | 
[2025-11-23 08:49:40] 2025-11-23 13:49:27,251 | INFO     | architecture information:
[2025-11-23 08:49:40] 2025-11-23 13:49:27,252 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:49:40] 2025-11-23 13:49:27,270 | INFO     | cat /etc/os-release:
[2025-11-23 08:49:40] NAME="CentOS Linux"
[2025-11-23 08:49:40] VERSION="7 (Core)"
[2025-11-23 08:49:40] ID="centos"
[2025-11-23 08:49:40] ID_LIKE="rhel fedora"
[2025-11-23 08:49:40] VERSION_ID="7"
[2025-11-23 08:49:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:49:40] ANSI_COLOR="0;31"
[2025-11-23 08:49:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:49:40] HOME_URL="https://www.centos.org/"
[2025-11-23 08:49:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:49:40] 
[2025-11-23 08:49:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:49:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:49:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:49:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:49:40] 
[2025-11-23 08:49:40] 2025-11-23 13:49:27,271 | INFO     | ***************************************
[2025-11-23 08:49:40] 2025-11-23 13:49:27,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 08:49:40] 2025-11-23 13:49:27,794 | INFO     | sufficient remaining disk space (17186160640 B)
[2025-11-23 08:49:40] 2025-11-23 13:49:27,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:49:40] 2025-11-23 13:49:27,795 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:49:40] 2025-11-23 13:49:27,795 | INFO     | update_server=False
[2025-11-23 08:49:40] 2025-11-23 13:49:27,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:49:40] 2025-11-23 13:49:27,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:49:40] 2025-11-23 13:49:27,796 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 08:49:40] 2025-11-23 13:49:27,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:49:40] 2025-11-23 13:49:27,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:49:40] 2025-11-23 13:49:27,798 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:49:40] 2025-11-23 13:49:27,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:49:40] 2025-11-23 13:49:27,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:49:40] 2025-11-23 13:49:27,811 | INFO     | all job control threads have been joined
[2025-11-23 08:49:40] 2025-11-23 13:49:27,843 | INFO     | all data control threads have been joined
[2025-11-23 08:49:40] 2025-11-23 13:49:27,948 | INFO     | all payload control threads have been joined
[2025-11-23 08:49:40] 2025-11-23 13:49:28,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:49:40] 2025-11-23 13:49:28,141 | INFO     | aborting loop
[2025-11-23 08:49:40] 2025-11-23 13:49:28,800 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:28,801 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:28,817 | INFO     | [job] control thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:28,848 | INFO     | [data] control thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:28,953 | INFO     | [payload] control thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:28,959 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,146 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,297 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,320 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,465 | INFO     | [job] validate thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,688 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,802 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:29,978 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:30,208 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:30,386 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:31,804 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:49:40] 2025-11-23 13:49:34,722 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:49:40] 2025-11-23 13:49:35,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140013654779712)>', '<ExcThread(monitor, started 140012620334848)>']
[2025-11-23 08:49:40] 2025-11-23 13:49:35,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:49:40] 2025-11-23 13:49:35,841 | INFO     | [monitor] control thread has ended
[2025-11-23 08:49:40] 2025-11-23 13:49:40,318 | INFO     | all workflow threads have been joined
[2025-11-23 08:49:40] 2025-11-23 13:49:40,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:49:40] 2025-11-23 13:49:40,319 | INFO     | traces error code: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:40,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:49:40] 2025-11-23 13:49:40,445 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:49:40] 2025-11-23 13:49:40,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:49:40] 2025-11-23 13:49:40,456 [wrapper] pilotpid: 31928
[2025-11-23 08:49:40] 2025-11-23 13:49:40,461 [wrapper] Pilot exit status: 0
[2025-11-23 08:49:40] 2025-11-23 13:49:40,479 [wrapper] pandaids: 6895324215 6895324215
[2025-11-23 08:49:40] 2025-11-23 13:49:40,529 [wrapper] cleanup supervisor_pilot 18690 31929
[2025-11-23 08:49:40] 2025-11-23 13:49:40,535 [wrapper] Test setup, not cleaning
[2025-11-23 08:49:40] 2025-11-23 13:49:40,540 [wrapper] apfmon messages muted
[2025-11-23 08:49:40] 2025-11-23 13:49:40,545 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:49:40] 2025-11-23 13:49:40,549 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:49:40]  *** Error codes and diagnostics ***
[2025-11-23 08:49:40]     "exeErrorCode": 0,
[2025-11-23 08:49:40]     "exeErrorDiag": "",
[2025-11-23 08:49:40]     "pilotErrorCode": 0,
[2025-11-23 08:49:40]     "pilotErrorDiag": "",
[2025-11-23 08:49:40]  *** Listing of results directory ***
[2025-11-23 08:49:40] total 1719064
[2025-11-23 08:49:40] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 09:16 queuedata.json
[2025-11-23 08:49:40] -rwx------ 1 boincer umatlas     36292 Nov 21 09:17 runpilot2-wrapper.sh
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas       100 Nov 22 07:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:49:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 07:38 run_atlas
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas       105 Nov 22 07:38 job.xml
[2025-11-23 08:49:40] -rw-r--r-- 3 boincer umatlas 410703152 Nov 22 07:38 EVNT.47483658._000019.pool.root.1
[2025-11-23 08:49:40] -rw-r--r-- 3 boincer umatlas 410703152 Nov 22 07:38 ATLAS.root_0
[2025-11-23 08:49:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:38 start_atlas.sh
[2025-11-23 08:49:40] drwxrwx--x 2 boincer umatlas      4096 Nov 22 07:38 shared
[2025-11-23 08:49:40] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 07:38 input.tar.gz
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas         0 Nov 22 07:38 boinc_lockfile
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 20:12 pandaJob.out
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas        57 Nov 22 20:12 setup.sh.local
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas    989784 Nov 22 20:12 agis_schedconf.cvmfs.json
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas       532 Nov 23 08:36 boinc_task_state.xml
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 08:47 init_data.xml
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas 918501458 Nov 23 08:48 HITS.47556137._000182.pool.root.1
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas      1062 Nov 23 08:49 memory_monitor_summary.json
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas   1526164 Nov 23 08:49 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas   1991513 Nov 23 08:49 log.47556137._000182.job.log.tgz.1
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas      8656 Nov 23 08:49 heartbeat.json
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas        96 Nov 23 08:49 pilot_heartbeat.json
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 08:49 boinc_mmap_file
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas        29 Nov 23 08:49 wrapper_checkpoint.txt
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas      4552 Nov 23 08:49 pilotlog.txt
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas   6250308 Nov 23 08:49 log.47556137._000182.job.log.1
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas       353 Nov 23 08:49 output.list
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas       620 Nov 23 08:49 runtime_log
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas   8263680 Nov 23 08:49 result.tar.gz
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas      9428 Nov 23 08:49 runtime_log.err
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas       793 Nov 23 08:49 EgRKDmv7gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWTJKDmaUq3zn.diag
[2025-11-23 08:49:40] -rw-r--r-- 1 boincer umatlas     23365 Nov 23 08:49 stderr.txt
[2025-11-23 08:49:40] HITS file was successfully produced:
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas 918501458 Nov 23 08:48 shared/HITS.pool.root.1
[2025-11-23 08:49:40]  *** Contents of shared directory: ***
[2025-11-23 08:49:40] total 1306728
[2025-11-23 08:49:40] -rw-r--r-- 3 boincer umatlas 410703152 Nov 22 07:38 ATLAS.root_0
[2025-11-23 08:49:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 07:38 start_atlas.sh
[2025-11-23 08:49:40] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 07:38 input.tar.gz
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas 918501458 Nov 23 08:48 HITS.pool.root.1
[2025-11-23 08:49:40] -rw------- 1 boincer umatlas   8263680 Nov 23 08:49 result.tar.gz
08:49:42 (28170): run_atlas exited; CPU time 345065.792811
08:49:42 (28170): called boinc_finish(0)

</stderr_txt>
]]>

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