Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:39 (2540399): wrapper (7.7.26015): starting
20:57:39 (2540399): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 20:57:39] Arguments: --nthreads 3
[2025-11-27 20:57:39] Threads: 3
[2025-11-27 20:57:39] Checking for CVMFS
[2025-11-27 20:57:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:57:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:57:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:57:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:57:40] 2.9.2.0 582442 13238 95012 153383 1 81 10325577 36864001 0 130560 1 4892613 99.882 748215 864 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 20:57:40] CVMFS is ok
[2025-11-27 20:57:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:57:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:57:40] Further information can be found at the LHC@home message board.
[2025-11-27 20:57:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:57:40] Checking for apptainer binary...
[2025-11-27 20:57:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:57:40] Running /usr/bin/apptainer --version
[2025-11-27 20:57:40] apptainer version 1.4.1-1.1
[2025-11-27 20:57:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:57:40] thA371
[2025-11-27 20:57:40] apptainer works
[2025-11-27 20:57:40] Set ATHENA_PROC_NUMBER=3
[2025-11-27 20:57:40] Set ATHENA_CORE_NUMBER=3
[2025-11-27 20:57:40] Starting ATLAS job with PandaID=6895324655
[2025-11-27 20:57:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:06:24]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:06:24] 2025-11-28 04:05:41,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | ***************************************
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | ***************************************
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | 
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | architecture information:
[2025-11-28 05:06:24] 2025-11-28 04:05:41,943 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:06:24] 2025-11-28 04:05:41,952 | INFO     | cat /etc/os-release:
[2025-11-28 05:06:24] NAME="CentOS Linux"
[2025-11-28 05:06:24] VERSION="7 (Core)"
[2025-11-28 05:06:24] ID="centos"
[2025-11-28 05:06:24] ID_LIKE="rhel fedora"
[2025-11-28 05:06:24] VERSION_ID="7"
[2025-11-28 05:06:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:06:24] ANSI_COLOR="0;31"
[2025-11-28 05:06:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:06:24] HOME_URL="https://www.centos.org/"
[2025-11-28 05:06:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:06:24] 
[2025-11-28 05:06:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:06:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:06:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:06:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:06:24] 
[2025-11-28 05:06:24] 2025-11-28 04:05:41,953 | INFO     | ***************************************
[2025-11-28 05:06:24] 2025-11-28 04:05:42,456 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 05:06:24] 2025-11-28 04:05:42,469 | INFO     | sufficient remaining disk space (343166418944 B)
[2025-11-28 05:06:24] 2025-11-28 04:05:42,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:06:24] 2025-11-28 04:05:42,469 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:06:24] 2025-11-28 04:05:42,469 | INFO     | update_server=False
[2025-11-28 05:06:24] 2025-11-28 04:05:42,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:06:24] 2025-11-28 04:05:42,632 | INFO     | all job control threads have been joined
[2025-11-28 05:06:24] 2025-11-28 04:05:42,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:06:24] 2025-11-28 04:05:43,015 | INFO     | all data control threads have been joined
[2025-11-28 05:06:24] 2025-11-28 04:05:43,059 | INFO     | all payload control threads have been joined
[2025-11-28 05:06:24] 2025-11-28 04:05:43,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:06:24] 2025-11-28 04:05:43,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:06:24] 2025-11-28 04:05:43,398 | INFO     | aborting loop
[2025-11-28 05:06:24] 2025-11-28 04:05:43,475 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:43,536 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:43,638 | INFO     | [job] control thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:43,813 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,015 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,020 | INFO     | [data] control thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,065 | INFO     | [payload] control thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,403 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,494 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,642 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:44,805 | INFO     | [job] validate thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:45,082 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:45,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:06:24] 2025-11-28 04:05:46,417 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:46,907 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:05:53,136 | INFO     | job.realtimelogging is not enabled
[2025-11-28 05:06:24] 2025-11-28 04:05:54,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:06:24] 2025-11-28 04:06:12,405 | INFO     | PID=2544121 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:06:24] 2025-11-28 04:06:12,405 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:06:24] 2025-11-28 04:06:12,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:06:24] 2025-11-28 04:06:12,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:06:24] 2025-11-28 04:06:19,291 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:06:24] 2025-11-28 04:06:19,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756976916288)>', '<ExcThread(monitor, started 139756356761344)>']
[2025-11-28 05:06:24] 2025-11-28 04:06:20,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:06:24] 2025-11-28 04:06:20,448 | INFO     | [monitor] control thread has ended
[2025-11-28 05:06:24] 2025-11-28 04:06:24,543 | INFO     | all workflow threads have been joined
[2025-11-28 05:06:24] 2025-11-28 04:06:24,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:06:24] 2025-11-28 04:06:24,544 | INFO     | traces error code: 0
[2025-11-28 05:06:24] 2025-11-28 04:06:24,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:06:24] 2025-11-28 04:06:24,594 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:06:24] 2025-11-28 04:06:24,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:06:24] 2025-11-28 04:06:24,599 [wrapper] pilotpid: 2544121
[2025-11-28 05:06:24] 2025-11-28 04:06:24,601 [wrapper] Pilot exit status: 0
[2025-11-28 05:06:24] 2025-11-28 04:06:24,609 [wrapper] pandaids: 6895324655
[2025-11-28 05:06:24] 2025-11-28 04:06:24,625 [wrapper] cleanup supervisor_pilot 2601177 2544122
[2025-11-28 05:06:24] 2025-11-28 04:06:24,627 [wrapper] Test setup, not cleaning
[2025-11-28 05:06:24] 2025-11-28 04:06:24,629 [wrapper] apfmon messages muted
[2025-11-28 05:06:24] 2025-11-28 04:06:24,632 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:06:24] 2025-11-28 04:06:24,634 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:06:24]  *** Error codes and diagnostics ***
[2025-11-28 05:06:24]     "exeErrorCode": 0,
[2025-11-28 05:06:24]     "exeErrorDiag": "",
[2025-11-28 05:06:24]     "pilotErrorCode": 0,
[2025-11-28 05:06:24]     "pilotErrorDiag": "",
[2025-11-28 05:06:24]  *** Listing of results directory ***
[2025-11-28 05:06:24] total 1320884
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc    576529 Nov 21 15:24 pilot3.tar.gz
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:26 queuedata.json
[2025-11-28 05:06:24] -rwx------ 1 boinc boinc     36292 Nov 21 15:26 runpilot2-wrapper.sh
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc       100 Nov 27 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:06:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 20:57 run_atlas
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc       105 Nov 27 20:57 job.xml
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc 408874276 Nov 27 20:57 EVNT.47483658._000026.pool.root.1
[2025-11-28 05:06:24] drwxrwx--x 2 boinc boinc      4096 Nov 27 20:57 shared
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc    590101 Nov 27 20:57 input.tar.gz
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc     15847 Nov 27 20:57 start_atlas.sh
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc         0 Nov 27 20:57 boinc_setup_complete
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      6440 Nov 27 20:57 init_data.xml
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc         0 Nov 27 20:57 boinc_lockfile
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      2784 Nov 27 20:57 pandaJob.out
[2025-11-28 05:06:24] -rw------- 1 boinc boinc    991191 Nov 27 20:57 agis_schedconf.cvmfs.json
[2025-11-28 05:06:24] drwx------ 5 boinc boinc      4096 Nov 27 20:57 pilot3
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc       531 Nov 28 05:02 boinc_task_state.xml
[2025-11-28 05:06:24] -rw------- 1 boinc boinc 929237982 Nov 28 05:05 HITS.47556137._000256.pool.root.1
[2025-11-28 05:06:24] -rw------- 1 boinc boinc      1026 Nov 28 05:05 memory_monitor_summary.json
[2025-11-28 05:06:24] -rw------- 1 boinc boinc   1516240 Nov 28 05:05 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:06:24] -rw------- 1 boinc boinc   1166649 Nov 28 05:05 log.47556137._000256.job.log.tgz.1
[2025-11-28 05:06:24] -rw------- 1 boinc boinc      8574 Nov 28 05:05 heartbeat.json
[2025-11-28 05:06:24] -rw------- 1 boinc boinc        95 Nov 28 05:06 pilot_heartbeat.json
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:06 boinc_mmap_file
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc        28 Nov 28 05:06 wrapper_checkpoint.txt
[2025-11-28 05:06:24] -rw------- 1 boinc boinc      4824 Nov 28 05:06 pilotlog.txt
[2025-11-28 05:06:24] -rw------- 1 boinc boinc   4121501 Nov 28 05:06 log.47556137._000256.job.log.1
[2025-11-28 05:06:24] -rw------- 1 boinc boinc       353 Nov 28 05:06 output.list
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:06 runtime_log
[2025-11-28 05:06:24] -rw------- 1 boinc boinc   5304320 Nov 28 05:06 result.tar.gz
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      8898 Nov 28 05:06 runtime_log.err
[2025-11-28 05:06:24] -rw------- 1 boinc boinc       665 Nov 28 05:06 8nmKDmDHhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJUJKDmBA1XXm.diag
[2025-11-28 05:06:24] -rw-r--r-- 1 boinc boinc      9542 Nov 28 05:06 stderr.txt
[2025-11-28 05:06:24] HITS file was successfully produced:
[2025-11-28 05:06:24] -rw------- 1 boinc boinc 929237982 Nov 28 05:05 shared/HITS.pool.root.1
[2025-11-28 05:06:24]  *** Contents of shared directory: ***
[2025-11-28 05:06:24] total 1312536
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc 408874276 Nov 27 20:57 ATLAS.root_0
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc    590101 Nov 27 20:57 input.tar.gz
[2025-11-28 05:06:24] -rw-r--r-- 2 boinc boinc     15847 Nov 27 20:57 start_atlas.sh
[2025-11-28 05:06:24] -rw------- 1 boinc boinc 929237982 Nov 28 05:05 HITS.pool.root.1
[2025-11-28 05:06:24] -rw------- 1 boinc boinc   5304320 Nov 28 05:06 result.tar.gz
05:06:26 (2540399): run_atlas exited; CPU time 86472.627256
05:06:26 (2540399): called boinc_finish(0)

</stderr_txt>
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