Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:18:25 (2015): wrapper (7.7.26015): starting
01:18:25 (2015): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:18:25] Arguments: --nthreads 8
[2025-11-25 01:18:25] Threads: 8
[2025-11-25 01:18:25] Checking for CVMFS
[2025-11-25 01:18:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:18:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:18:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:18:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:18:28] 2.11.2.0 31287 187986 141736 153264 3 75 22471524 25165825 4632 130560 11 64815242 99.882 33902569 2206 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:18:28] CVMFS is ok
[2025-11-25 01:18:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:18:28] Checking for apptainer binary...
[2025-11-25 01:18:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:18:28] Running /usr/bin/apptainer --version
[2025-11-25 01:18:28] apptainer version 1.3.2-1.el7
[2025-11-25 01:18:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:19:00] cg-vwn426.simple-grid.lan
[2025-11-25 01:19:00] apptainer works
[2025-11-25 01:19:00] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:19:00] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:19:00] Starting ATLAS job with PandaID=6895324206
[2025-11-25 01:19:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:36:52]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:36:52] 2025-11-26 01:36:08,492 | INFO     | log transfer has been attempted: DONE
[2025-11-26 02:36:52] 2025-11-26 01:36:08,492 | INFO     | job 6895324206 has finished - writing final server update
[2025-11-26 02:36:52] 2025-11-26 01:36:08,492 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 02:36:52] 2025-11-26 01:36:08,493 | INFO     | executing command: lscpu
[2025-11-26 02:36:52] 2025-11-26 01:36:08,546 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:36:52] 2025-11-26 01:36:09,239 | INFO     | time since job start (90805s) is within the limit (172800.0s)
[2025-11-26 02:36:52] 2025-11-26 01:36:09,530 | INFO     | monitor loop #6062: job 0:6895324206 is in state 'finished'
[2025-11-26 02:36:52] 2025-11-26 01:36:09,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:36:52] 2025-11-26 01:36:11,247 | INFO     | time since job start (90807s) is within the limit (172800.0s)
[2025-11-26 02:36:52] 2025-11-26 01:36:12,035 | INFO     | monitor loop #6063: job 0:6895324206 is in state 'finished'
[2025-11-26 02:36:52] 2025-11-26 01:36:12,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:36:52] 2025-11-26 01:36:13,254 | INFO     | time since job start (90809s) is within the limit (172800.0s)
[2025-11-26 02:36:52] 2025-11-26 01:36:14,540 | INFO     | monitor loop #6064: job 0:6895324206 is in state 'finished'
[2025-11-26 02:36:52] 2025-11-26 01:36:14,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,158 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:36:52] 2025-11-26 01:36:15,159 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:36:52] 2025-11-26 01:36:15,161 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6895324206/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,162 | INFO     | extracted standard info from prmon json
[2025-11-26 02:36:52] 2025-11-26 01:36:15,162 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:36:52] 2025-11-26 01:36:15,162 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:36:52] 2025-11-26 01:36:15,191 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:36:52] 2025-11-26 01:36:15,194 | INFO     | sum of square deviations: 1005226647113.9039
[2025-11-26 02:36:52] 2025-11-26 01:36:15,257 | INFO     | sum of deviations: 4579705220848.527
[2025-11-26 02:36:52] 2025-11-26 01:36:15,258 | INFO     | mean x: 1764075802.8141892
[2025-11-26 02:36:52] 2025-11-26 01:36:15,258 | INFO     | mean y: 2844147.1837837836
[2025-11-26 02:36:52] 2025-11-26 01:36:15,258 | INFO     | intersect: -8034096762.924483
[2025-11-26 02:36:52] 2025-11-26 01:36:15,260 | INFO     | chi2: 22.7129980887297
[2025-11-26 02:36:52] 2025-11-26 01:36:15,262 | INFO     | sum of square deviations: 995073524370.2366
[2025-11-26 02:36:52] 2025-11-26 01:36:15,273 | INFO     | time since job start (90811s) is within the limit (172800.0s)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,328 | INFO     | sum of deviations: 5050519262761.908
[2025-11-26 02:36:52] 2025-11-26 01:36:15,328 | INFO     | mean x: 1764075650.318644
[2025-11-26 02:36:52] 2025-11-26 01:36:15,328 | INFO     | mean y: 2851219.257627119
[2025-11-26 02:36:52] 2025-11-26 01:36:15,328 | INFO     | intersect: -8950756564.189537
[2025-11-26 02:36:52] 2025-11-26 01:36:15,330 | INFO     | chi2: 19.824016938854026
[2025-11-26 02:36:52] 2025-11-26 01:36:15,330 | INFO     | current chi2=19.824016938854026 (change=12.719505978865916 %)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,331 | INFO     | right removable region: 1474
[2025-11-26 02:36:52] 2025-11-26 01:36:15,333 | INFO     | sum of square deviations: 995072337920.2377
[2025-11-26 02:36:52] 2025-11-26 01:36:15,402 | INFO     | sum of deviations: 3957485959872.757
[2025-11-26 02:36:52] 2025-11-26 01:36:15,402 | INFO     | mean x: 1764075955.318644
[2025-11-26 02:36:52] 2025-11-26 01:36:15,402 | INFO     | mean y: 2853491.4962711865
[2025-11-26 02:36:52] 2025-11-26 01:36:15,402 | INFO     | intersect: -7013024208.3240385
[2025-11-26 02:36:52] 2025-11-26 01:36:15,404 | INFO     | chi2: 17.88369326124623
[2025-11-26 02:36:52] 2025-11-26 01:36:15,405 | INFO     | current chi2=17.88369326124623 (change=21.26229575073049 %)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,405 | INFO     | left removable region: 10
[2025-11-26 02:36:52] 2025-11-26 01:36:15,407 | INFO     | sum of square deviations: 972975446885.9664
[2025-11-26 02:36:52] 2025-11-26 01:36:15,475 | INFO     | sum of deviations: 3990905320698.201
[2025-11-26 02:36:52] 2025-11-26 01:36:15,475 | INFO     | mean x: 1764075924.828552
[2025-11-26 02:36:52] 2025-11-26 01:36:15,476 | INFO     | mean y: 2870406.837431694
[2025-11-26 02:36:52] 2025-11-26 01:36:15,476 | INFO     | intersect: -7232933967.308293
[2025-11-26 02:36:52] 2025-11-26 01:36:15,478 | INFO     | chi2: 10.752656201925657
[2025-11-26 02:36:52] 2025-11-26 01:36:15,478 | INFO     | current memory leak: 4.10 B/s (using 1464 data points, chi2=10.75)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,480 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,480 | INFO     | ..............................
[2025-11-26 02:36:52] 2025-11-26 01:36:15,480 | INFO     | . Timing measurements:
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . get job = 0 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . initial setup = 11 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . payload setup = 167 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . stage-in = 0 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . payload execution = 90430 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . stage-out = 3 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | . log creation = 1 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,481 | INFO     | ..............................
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | job summary report
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | --------------------------------------------------
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | PanDA job id: 6895324206
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | task id: 47556137
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | errors: (none)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | pilot state: finished 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,615 | INFO     | transexitcode: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | exeerrorcode: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | exeerrordiag: 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | exitcode: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | exitmsg: OK
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | cpuconsumptiontime: 338694 s
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | nevents: 1000
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | neventsw: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | pid: 12316
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | pgrp: 12316
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | corecount: 8
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | event service: False
[2025-11-26 02:36:52] 2025-11-26 01:36:15,616 | INFO     | sizes: {0: 2284135, 1: 2284334, 12: 2284334, 23: 2284362, 34: 2284390, 44: 2284418, 55: 2284574, 66: 2284602, 77: 2284630, 87: 2284686, 98: 2284714, 101: 2285284, 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,617 | INFO     | --------------------------------------------------
[2025-11-26 02:36:52] 2025-11-26 01:36:15,617 | INFO     | 
[2025-11-26 02:36:52] 2025-11-26 01:36:15,617 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-26 02:36:52] 2025-11-26 01:36:15,646 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,646 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,646 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,646 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,647 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:36:52] 2025-11-26 01:36:15,650 | INFO     | job 6895324206 has completed (purged errors)
[2025-11-26 02:36:52] 2025-11-26 01:36:15,650 | INFO     | overall cleanup function is called
[2025-11-26 02:36:52] 2025-11-26 01:36:16,668 | INFO     | --- collectZombieJob: --- 10, [12316]
[2025-11-26 02:36:52] 2025-11-26 01:36:16,668 | INFO     | zombie collector waiting for pid 12316
[2025-11-26 02:36:52] 2025-11-26 01:36:16,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:36:52] 2025-11-26 01:36:16,668 | INFO     | collected zombie processes
[2025-11-26 02:36:52] 2025-11-26 01:36:16,668 | INFO     | will attempt to kill all subprocesses of pid=12316
[2025-11-26 02:36:52] 2025-11-26 01:36:16,784 | INFO     | process IDs to be killed: [12316] (in reverse order)
[2025-11-26 02:36:52] 2025-11-26 01:36:16,846 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:36:52] 2025-11-26 01:36:16,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:36:52] 2025-11-26 01:36:16,850 | INFO     | did not find any defunct processes belonging to 12316
[2025-11-26 02:36:52] 2025-11-26 01:36:16,854 | INFO     | did not find any defunct processes belonging to 12316
[2025-11-26 02:36:52] 2025-11-26 01:36:16,856 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:36:52] 2025-11-26 01:36:16,856 | INFO     | ready for new job
[2025-11-26 02:36:52] 2025-11-26 01:36:16,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:36:52] 2025-11-26 01:36:16,862 | INFO     | ***************************************
[2025-11-26 02:36:52] 2025-11-26 01:36:16,862 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:36:52] 2025-11-26 01:36:16,862 | INFO     | ***************************************
[2025-11-26 02:36:52] 2025-11-26 01:36:16,862 | INFO     | 
[2025-11-26 02:36:52] 2025-11-26 01:36:16,863 | INFO     | pilot is running in a VM
[2025-11-26 02:36:52] 2025-11-26 01:36:16,863 | INFO     | architecture information:
[2025-11-26 02:36:52] 2025-11-26 01:36:16,864 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:36:52] 2025-11-26 01:36:16,906 | INFO     | cat /etc/os-release:
[2025-11-26 02:36:52] NAME="CentOS Linux"
[2025-11-26 02:36:52] VERSION="7 (Core)"
[2025-11-26 02:36:52] ID="centos"
[2025-11-26 02:36:52] ID_LIKE="rhel fedora"
[2025-11-26 02:36:52] VERSION_ID="7"
[2025-11-26 02:36:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:36:52] ANSI_COLOR="0;31"
[2025-11-26 02:36:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:36:52] HOME_URL="https://www.centos.org/"
[2025-11-26 02:36:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:36:52] 
[2025-11-26 02:36:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:36:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:36:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:36:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:36:52] 
[2025-11-26 02:36:52] 2025-11-26 01:36:16,906 | INFO     | ***************************************
[2025-11-26 02:36:52] 2025-11-26 01:36:17,410 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-26 02:36:52] 2025-11-26 01:36:17,453 | INFO     | sufficient remaining disk space (495013855232 B)
[2025-11-26 02:36:52] 2025-11-26 01:36:17,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:36:52] 2025-11-26 01:36:17,454 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:36:52] 2025-11-26 01:36:17,454 | INFO     | update_server=False
[2025-11-26 02:36:52] 2025-11-26 01:36:17,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:36:52] 2025-11-26 01:36:17,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:36:52] 2025-11-26 01:36:17,454 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:36:52] 2025-11-26 01:36:17,842 | INFO     | all data control threads have been joined
[2025-11-26 02:36:52] 2025-11-26 01:36:18,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:36:52] 2025-11-26 01:36:18,060 | INFO     | aborting loop
[2025-11-26 02:36:52] 2025-11-26 01:36:18,333 | INFO     | all payload control threads have been joined
[2025-11-26 02:36:52] 2025-11-26 01:36:18,461 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:18,461 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:18,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:36:52] 2025-11-26 01:36:18,849 | INFO     | [data] control thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:18,903 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,001 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,007 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,016 | INFO     | all job control threads have been joined
[2025-11-26 02:36:52] 2025-11-26 01:36:19,066 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,302 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,340 | INFO     | [payload] control thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,462 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,716 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,732 | INFO     | [job] validate thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:19,783 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:20,021 | INFO     | [job] control thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:22,663 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:36:52] 2025-11-26 01:36:22,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:28,499 | INFO     | job.realtimelogging is not enabled
[2025-11-26 02:36:52] 2025-11-26 01:36:29,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:36:52] 2025-11-26 01:36:30,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544163628864)>', '<ExcThread(monitor, started 140543711491840)>']
[2025-11-26 02:36:52] 2025-11-26 01:36:35,409 | INFO     | all workflow threads have been joined
[2025-11-26 02:36:52] 2025-11-26 01:36:35,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:36:52] 2025-11-26 01:36:35,410 | INFO     | traces error code: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:35,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:36:52] 2025-11-26 01:36:48,431 | INFO     | PID=5791 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 02:36:52] 2025-11-26 01:36:48,431 | INFO     | .. there are 9 such processes running
[2025-11-26 02:36:52] 2025-11-26 01:36:48,435 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:36:52] 2025-11-26 01:36:48,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:36:52] 2025-11-26 01:36:48,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:36:52] 2025-11-26 01:36:48,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:36:52] 2025-11-26 01:36:48,436 | INFO     | [monitor] control thread has ended
[2025-11-26 02:36:52] 2025-11-26 01:36:48,635 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:36:52] 2025-11-26 01:36:48,704 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:36:52] 2025-11-26 01:36:48,797 [wrapper] pilotpid: 5791
[2025-11-26 02:36:52] 2025-11-26 01:36:48,908 [wrapper] Pilot exit status: 0
[2025-11-26 02:36:52] 2025-11-26 01:36:49,343 [wrapper] pandaids: 6895324206
[2025-11-26 02:36:52] 2025-11-26 01:36:49,912 [wrapper] cleanup supervisor_pilot 14487 5792
[2025-11-26 02:36:52] 2025-11-26 01:36:49,937 [wrapper] Test setup, not cleaning
[2025-11-26 02:36:52] 2025-11-26 01:36:50,030 [wrapper] apfmon messages muted
[2025-11-26 02:36:52] 2025-11-26 01:36:50,084 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:36:52] 2025-11-26 01:36:50,195 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:36:52]  *** Error codes and diagnostics ***
[2025-11-26 02:36:52]     "exeErrorCode": 0,
[2025-11-26 02:36:52]     "exeErrorDiag": "",
[2025-11-26 02:36:52]     "pilotErrorCode": 0,
[2025-11-26 02:36:52]     "pilotErrorDiag": "",
[2025-11-26 02:36:52]  *** Listing of results directory ***
[2025-11-26 02:36:52] total 1331916
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-26 02:36:52] -rwx------. 1 boinc boinc     36292 Nov 21 15:15 runpilot2-wrapper.sh
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc      5112 Nov 21 15:15 queuedata.json
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:36:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:18 run_atlas
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:18 job.xml
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc      6391 Nov 25 01:18 init_data.xml
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc 410047865 Nov 25 01:18 EVNT.47483658._000018.pool.root.1
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:18 start_atlas.sh
[2025-11-26 02:36:52] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:18 shared
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc    590095 Nov 25 01:18 input.tar.gz
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:18 boinc_lockfile
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc      2784 Nov 25 01:19 pandaJob.out
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc    991801 Nov 25 01:22 agis_schedconf.cvmfs.json
[2025-11-26 02:36:52] drwx------. 5 boinc boinc      4096 Nov 25 01:22 pilot3
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc       533 Nov 26 02:17 boinc_task_state.xml
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc 920651033 Nov 26 02:35 HITS.47556137._000173.pool.root.1
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc      1029 Nov 26 02:36 memory_monitor_summary.json
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc   1516240 Nov 26 02:36 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc   2557758 Nov 26 02:36 log.47556137._000173.job.log.tgz.1
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc      7943 Nov 26 02:36 heartbeat.json
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:36 boinc_mmap_file
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:36 wrapper_checkpoint.txt
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc        95 Nov 26 02:36 pilot_heartbeat.json
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc       819 Nov 26 02:36 pilotlog.txt
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc  12086150 Nov 26 02:36 log.47556137._000173.job.log.1
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc       353 Nov 26 02:36 output.list
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:36 runtime_log
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc  14663680 Nov 26 02:36 result.tar.gz
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc      8817 Nov 26 02:36 runtime_log.err
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc       662 Nov 26 02:36 3gQLDmL6gg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmseHKDmd512wm.diag
[2025-11-26 02:36:52] -rw-r--r--. 1 boinc boinc     21396 Nov 26 02:36 stderr.txt
[2025-11-26 02:36:52] HITS file was successfully produced:
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc 920651033 Nov 26 02:35 shared/HITS.pool.root.1
[2025-11-26 02:36:52]  *** Contents of shared directory: ***
[2025-11-26 02:36:52] total 1314432
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc 410047865 Nov 25 01:18 ATLAS.root_0
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:18 start_atlas.sh
[2025-11-26 02:36:52] -rw-r--r--. 2 boinc boinc    590095 Nov 25 01:18 input.tar.gz
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc 920651033 Nov 26 02:35 HITS.pool.root.1
[2025-11-26 02:36:52] -rw-------. 1 boinc boinc  14663680 Nov 26 02:36 result.tar.gz
02:36:54 (2015): run_atlas exited; CPU time 339200.024209
02:36:54 (2015): called boinc_finish(0)

</stderr_txt>
]]>

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