Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:00:47 (1024247): wrapper (7.7.26015): starting
12:00:47 (1024247): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 12:00:47] Arguments: --nthreads 4
[2025-11-22 12:00:47] Threads: 4
[2025-11-22 12:00:47] Checking for CVMFS
[2025-11-22 12:00:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 12:00:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 12:00:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 12:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 12:00:47] 2.9.2.0 184594 798 101324 153168 2 90 33670152 36864001 0 130560 0 2561225 99.997 33228 13885 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 12:00:47] CVMFS is ok
[2025-11-22 12:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 12:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 12:00:47] Further information can be found at the LHC@home message board.
[2025-11-22 12:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 12:00:47] Checking for apptainer binary...
[2025-11-22 12:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 12:00:47] Running /usr/bin/apptainer --version
[2025-11-22 12:00:47] apptainer version 1.4.1-1.1
[2025-11-22 12:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 12:00:47] cosA131
[2025-11-22 12:00:47] apptainer works
[2025-11-22 12:00:47] Set ATHENA_PROC_NUMBER=4
[2025-11-22 12:00:47] Set ATHENA_CORE_NUMBER=4
[2025-11-22 12:00:47] Starting ATLAS job with PandaID=6891591811
[2025-11-22 12:00:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:11:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | WARNING  | wrong length of table data, x=[1763809279.0, 1763809340.0, 1763809401.0, 1763809462.0, 1763809523.0, 1763809584.0, 1763809645.0], y=[2480.0, 836641.0, 1052320.0, 1
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . Timing measurements:
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . get job = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . initial setup = 1 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload setup = 4 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload execution = 404 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . log creation = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6891591811/pilotlog.txt
[2025-11-22 12:11:03] 2025-11-22 11:10:06,683 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 12:11:03] - Log from pilotlog.txt -
[2025-11-22 12:11:03] 2025-11-22 11:10:06,663 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 12:11:03] 2025-11-22 11:10:06,665 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3315.1180000000004
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6891591811/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | extracted standard info from prmon json
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | WARNING  | wrong length of table data, x=[1763809279.0, 1763809340.0, 1763809401.0, 1763809462.0, 1763809523.0, 1763809584.0, 1763809645.0], y=[2480.0, 836641.0, 1052320.0, 1
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . Timing measurements:
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . get job = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . initial setup = 1 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload setup = 4 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload execution = 404 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . log creation = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6891591811/pilotlog.txt
[2025-11-22 12:11:03] 2025-11-22 11:10:06,683 | WARNING  | 
[2025-11-22 12:11:03] [begin log extracts]
[2025-11-22 12:11:03] - Log from pilotlog.txt -
[2025-11-22 12:11:03] 2025-11-22 11:10:06,663 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 12:11:03] 2025-11-22 11:10:06,665 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3315.1180000000004
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6891591811/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | extracted standard info from prmon json
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:11:03] 2025-11-22 11:10:06,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | WARNING  | wrong length of table data, x=[1763809279.0, 1763809340.0, 1763809401.0, 1763809462.0, 1763809523.0, 1763809584.0, 1763809645.0], y=[2480.0, 836641.0, 1052320.0, 1
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . Timing measurements:
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . get job = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . initial setup = 1 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload setup = 4 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . payload execution = 404 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | . log creation = 0 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,667 | INFO     | ..............................
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:03] 2025-11-22 11:10:06,668 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6891591811/pilotlog.txt
[2025-11-22 12:11:03] [end log extracts]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,683 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,683 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | 
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | job summary report
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | --------------------------------------------------
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | PanDA job id: 6891591811
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | task id: 47493068
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 11:07:55,580 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | pilot state: failed 
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | transexitcode: 65
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | exeerrorcode: 65
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 124622004; Curre
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | exitcode: 65
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 124622004; Current al
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | cpuconsumptiontime: 91 s
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | nevents: 0
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | neventsw: 0
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | pid: 1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:06,723 | INFO     | pgrp: 1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | corecount: 4
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | event service: False
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | sizes: {0: 2298628, 1: 2298827, 4: 2299089, 11: 2299117, 412: 2326249, 413: 2330545, 415: 2330729, 536: 2330975}
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | --------------------------------------------------
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | 
[2025-11-22 12:11:03] 2025-11-22 11:10:06,724 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,743 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | job 6891591811 has completed (purged errors)
[2025-11-22 12:11:03] 2025-11-22 11:10:06,744 | INFO     | overall cleanup function is called
[2025-11-22 12:11:03] 2025-11-22 11:10:07,752 | INFO     | --- collectZombieJob: --- 10, [1034618]
[2025-11-22 12:11:03] 2025-11-22 11:10:07,752 | INFO     | zombie collector waiting for pid 1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:07,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:11:03] 2025-11-22 11:10:07,753 | INFO     | collected zombie processes
[2025-11-22 12:11:03] 2025-11-22 11:10:07,753 | INFO     | will attempt to kill all subprocesses of pid=1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:07,806 | INFO     | process IDs to be killed: [1034618] (in reverse order)
[2025-11-22 12:11:03] 2025-11-22 11:10:07,844 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:11:03] 2025-11-22 11:10:07,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:11:03] 2025-11-22 11:10:07,846 | INFO     | did not find any defunct processes belonging to 1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:07,848 | INFO     | did not find any defunct processes belonging to 1034618
[2025-11-22 12:11:03] 2025-11-22 11:10:07,848 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | ready for new job
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | ***************************************
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | ***************************************
[2025-11-22 12:11:03] 2025-11-22 11:10:07,849 | INFO     | 
[2025-11-22 12:11:03] 2025-11-22 11:10:07,850 | INFO     | architecture information:
[2025-11-22 12:11:03] 2025-11-22 11:10:07,850 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:11:03] 2025-11-22 11:10:07,865 | INFO     | cat /etc/os-release:
[2025-11-22 12:11:03] NAME="CentOS Linux"
[2025-11-22 12:11:03] VERSION="7 (Core)"
[2025-11-22 12:11:03] ID="centos"
[2025-11-22 12:11:03] ID_LIKE="rhel fedora"
[2025-11-22 12:11:03] VERSION_ID="7"
[2025-11-22 12:11:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:11:03] ANSI_COLOR="0;31"
[2025-11-22 12:11:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:11:03] HOME_URL="https://www.centos.org/"
[2025-11-22 12:11:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:11:03] 
[2025-11-22 12:11:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:11:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:11:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:11:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:11:03] 
[2025-11-22 12:11:03] 2025-11-22 11:10:07,866 | INFO     | ***************************************
[2025-11-22 12:11:03] 2025-11-22 11:10:08,369 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 12:11:03] 2025-11-22 11:10:08,387 | INFO     | sufficient remaining disk space (326389202944 B)
[2025-11-22 12:11:03] 2025-11-22 11:10:08,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:11:03] 2025-11-22 11:10:08,388 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:11:03] 2025-11-22 11:10:08,388 | INFO     | update_server=False
[2025-11-22 12:11:03] 2025-11-22 11:10:08,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:11:03] 2025-11-22 11:10:08,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:11:03] 2025-11-22 11:10:08,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:11:03] 2025-11-22 11:10:08,434 | INFO     | aborting loop
[2025-11-22 12:11:03] 2025-11-22 11:10:08,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:11:03] 2025-11-22 11:10:08,718 | INFO     | all payload control threads have been joined
[2025-11-22 12:11:03] 2025-11-22 11:10:08,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:11:03] 2025-11-22 11:10:09,209 | INFO     | all job control threads have been joined
[2025-11-22 12:11:03] 2025-11-22 11:10:09,304 | INFO     | all data control threads have been joined
[2025-11-22 12:11:03] 2025-11-22 11:10:09,393 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,394 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,440 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,464 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,724 | INFO     | [payload] control thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:09,896 | INFO     | [job] validate thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,006 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,077 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,107 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,214 | INFO     | [job] control thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,310 | INFO     | [data] control thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,565 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,724 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:10,769 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:12,701 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:11:03] 2025-11-22 11:10:38,551 | INFO     | PID=1028046 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:11:03] 2025-11-22 11:10:38,552 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:11:03] 2025-11-22 11:10:38,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:11:03] 2025-11-22 11:10:38,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:11:03] 2025-11-22 11:10:55,893 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:11:03] 2025-11-22 11:10:57,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322941695808)>', '<ExcThread(monitor, started 140322000590592)>']
[2025-11-22 12:11:03] 2025-11-22 11:10:58,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:11:03] 2025-11-22 11:10:58,658 | INFO     | [monitor] control thread has ended
[2025-11-22 12:11:03] 2025-11-22 11:11:02,865 | INFO     | all workflow threads have been joined
[2025-11-22 12:11:03] 2025-11-22 11:11:02,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:11:03] 2025-11-22 11:11:02,866 | INFO     | traces error code: 0
[2025-11-22 12:11:03] 2025-11-22 11:11:02,866 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:11:03] 2025-11-22 11:11:02,945 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:11:03] 2025-11-22 11:11:02,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:11:03] 2025-11-22 11:11:02,953 [wrapper] pilotpid: 1028046
[2025-11-22 12:11:03] 2025-11-22 11:11:02,958 [wrapper] Pilot exit status: 0
[2025-11-22 12:11:03] 2025-11-22 11:11:02,970 [wrapper] pandaids: 6891591811
[2025-11-22 12:11:03] 2025-11-22 11:11:02,995 [wrapper] cleanup supervisor_pilot 1028052 1028047
[2025-11-22 12:11:03] 2025-11-22 11:11:02,999 [wrapper] Test setup, not cleaning
[2025-11-22 12:11:03] 2025-11-22 11:11:03,003 [wrapper] apfmon messages muted
[2025-11-22 12:11:03] 2025-11-22 11:11:03,007 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:11:03] 2025-11-22 11:11:03,011 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:11:03]  *** Error codes and diagnostics ***
[2025-11-22 12:11:03]     "exeErrorCode": 65,
[2025-11-22 12:11:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 124622004; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-22 12:11:03]     "pilotErrorCode": 1305,
[2025-11-22 12:11:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 124622004; Current algorit",
[2025-11-22 12:11:03]  *** Listing of results directory ***
[2025-11-22 12:11:03] total 406892
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:13 queuedata.json
[2025-11-22 12:11:03] -rwx------ 1 boinc boinc     36292 Nov 18 19:13 runpilot2-wrapper.sh
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc       100 Nov 22 12:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:11:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 12:00 run_atlas
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc       105 Nov 22 12:00 job.xml
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc 411563546 Nov 22 12:00 EVNT.47493065._000625.pool.root.1
[2025-11-22 12:11:03] drwxrwx--x 2 boinc boinc      4096 Nov 22 12:00 shared
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc    590101 Nov 22 12:00 input.tar.gz
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc     15120 Nov 22 12:00 start_atlas.sh
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc         0 Nov 22 12:00 boinc_setup_complete
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc      6379 Nov 22 12:00 init_data.xml
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc         0 Nov 22 12:00 boinc_lockfile
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc      2773 Nov 22 12:00 pandaJob.out
[2025-11-22 12:11:03] -rw------- 1 boinc boinc    989768 Nov 22 12:00 agis_schedconf.cvmfs.json
[2025-11-22 12:11:03] -rw------- 1 boinc boinc   1526164 Nov 22 12:00 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:11:03] drwx------ 5 boinc boinc      4096 Nov 22 12:00 pilot3
[2025-11-22 12:11:03] -rw------- 1 boinc boinc      1000 Nov 22 12:07 memory_monitor_summary.json
[2025-11-22 12:11:03] -rw------- 1 boinc boinc    447447 Nov 22 12:08 log.47493068._005743.job.log.tgz.1
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc       525 Nov 22 12:08 boinc_task_state.xml
[2025-11-22 12:11:03] -rw------- 1 boinc boinc        95 Nov 22 12:09 pilot_heartbeat.json
[2025-11-22 12:11:03] -rw------- 1 boinc boinc     10859 Nov 22 12:10 heartbeat.json
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc      8192 Nov 22 12:10 boinc_mmap_file
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc        23 Nov 22 12:10 wrapper_checkpoint.txt
[2025-11-22 12:11:03] -rw------- 1 boinc boinc      4752 Nov 22 12:11 pilotlog.txt
[2025-11-22 12:11:03] -rw------- 1 boinc boinc    139610 Nov 22 12:11 log.47493068._005743.job.log.1
[2025-11-22 12:11:03] -rw------- 1 boinc boinc       186 Nov 22 12:11 output.list
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc       620 Nov 22 12:11 runtime_log
[2025-11-22 12:11:03] -rw------- 1 boinc boinc    604160 Nov 22 12:11 result.tar.gz
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc      8629 Nov 22 12:11 runtime_log.err
[2025-11-22 12:11:03] -rw------- 1 boinc boinc       651 Nov 22 12:11 Yy9LDmOOff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcfFKDmNYMt4n.diag
[2025-11-22 12:11:03] -rw-r--r-- 1 boinc boinc     22750 Nov 22 12:11 stderr.txt
[2025-11-22 12:11:03] No HITS result produced
[2025-11-22 12:11:03]  *** Contents of shared directory: ***
[2025-11-22 12:11:03] total 403112
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc 411563546 Nov 22 12:00 ATLAS.root_0
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc    590101 Nov 22 12:00 input.tar.gz
[2025-11-22 12:11:03] -rw-r--r-- 2 boinc boinc     15120 Nov 22 12:00 start_atlas.sh
[2025-11-22 12:11:03] -rw------- 1 boinc boinc    604160 Nov 22 12:11 result.tar.gz
12:11:25 (1024247): run_atlas exited; CPU time 82.134737
12:11:25 (1024247): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN