Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:40 (3855621): wrapper (7.7.26015): starting
21:33:40 (3855621): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 21:33:40] Arguments: --nthreads 3
[2025-11-27 21:33:40] Threads: 3
[2025-11-27 21:33:40] Checking for CVMFS
[2025-11-27 21:33:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:33:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:33:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:33:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:33:40] 2.9.2.0 1906071 13260 90036 153384 2 81 11127808 36864001 0 130560 1 4920232 99.941 658083 808 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 21:33:40] CVMFS is ok
[2025-11-27 21:33:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:33:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:33:40] Further information can be found at the LHC@home message board.
[2025-11-27 21:33:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:33:40] Checking for apptainer binary...
[2025-11-27 21:33:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:33:40] Running /usr/bin/apptainer --version
[2025-11-27 21:33:40] apptainer version 1.4.1-1.1
[2025-11-27 21:33:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:33:40] thA352a
[2025-11-27 21:33:40] apptainer works
[2025-11-27 21:33:40] Set ATHENA_PROC_NUMBER=3
[2025-11-27 21:33:40] Set ATHENA_CORE_NUMBER=3
[2025-11-27 21:33:40] Starting ATLAS job with PandaID=6895323833
[2025-11-27 21:33:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:45:27]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:45:27] 2025-11-28 04:44:31,899 | INFO     | executing command: lscpu
[2025-11-28 05:45:27] 2025-11-28 04:44:31,912 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-28 05:45:27] 2025-11-28 04:44:32,824 | INFO     | PID=3859341 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:45:27] 2025-11-28 04:44:33,824 | INFO     | time since job start (29447s) is within the limit (172800.0s)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,180 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:45:27] 2025-11-28 04:44:34,181 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3873.9834166666665
[2025-11-28 05:45:27] 2025-11-28 04:44:34,182 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895323833/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,182 | INFO     | extracted standard info from prmon json
[2025-11-28 05:45:27] 2025-11-28 04:44:34,182 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:45:27] 2025-11-28 04:44:34,182 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:45:27] 2025-11-28 04:44:34,185 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:45:27] 2025-11-28 04:44:34,185 | INFO     | sum of square deviations: 34939602082.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | sum of deviations: 136949837788.00003
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | mean x: 1764290346.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | mean y: 2153200.209109731
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | intersect: -6913188197.456967
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | chi2: 3.6130162554248626
[2025-11-28 05:45:27] 2025-11-28 04:44:34,187 | INFO     | sum of square deviations: 33865712179.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | sum of deviations: 201737468637.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | mean x: 1764290193.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | mean y: 2162367.9623430963
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | intersect: -10507684160.327257
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | chi2: 2.2084264255268105
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | current chi2=2.2084264255268105 (change=38.875823705168564 %)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,189 | INFO     | sum of square deviations: 32814055252.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,191 | INFO     | sum of deviations: 198915851051.00003
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | mean x: 1764290041.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | mean y: 2161958.801268499
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | intersect: -10692805557.74574
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | chi2: 2.2078371161020263
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | current chi2=2.2078371161020263 (change=0.026684584914057664 %)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | right removable region: 472
[2025-11-28 05:45:27] 2025-11-28 04:44:34,192 | INFO     | sum of square deviations: 33865712179.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | sum of deviations: 40844493429.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | mean x: 1764290498.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | mean y: 2166826.939330544
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | intersect: -2125694866.6745925
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | chi2: 1.5914775718811542
[2025-11-28 05:45:27] 2025-11-28 04:44:34,194 | INFO     | current chi2=1.5914775718811542 (change=55.95155240468165 %)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,195 | INFO     | sum of square deviations: 32814055252.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,196 | INFO     | sum of deviations: 20319762216.00002
[2025-11-28 05:45:27] 2025-11-28 04:44:34,196 | INFO     | mean x: 1764290651.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,196 | INFO     | mean y: 2169789.5391120506
[2025-11-28 05:45:27] 2025-11-28 04:44:34,196 | INFO     | intersect: -1090348834.9624066
[2025-11-28 05:45:27] 2025-11-28 04:44:34,197 | INFO     | chi2: 1.4372194272188685
[2025-11-28 05:45:27] 2025-11-28 04:44:34,197 | INFO     | current chi2=1.4372194272188685 (change=9.69276271232336 %)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,197 | INFO     | left removable region: 20
[2025-11-28 05:45:27] 2025-11-28 04:44:34,197 | INFO     | sum of square deviations: 28634631773.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | sum of deviations: 74435128000.0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | mean x: 1764290620.5
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | mean y: 2180421.9380530976
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | intersect: -4584056244.459219
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | chi2: 0.0170676703947498
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | current memory leak: 2.60 B/s (using 452 data points, chi2=0.02)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | could have reported an average CPU frequency of 4078 MHz (20 samples)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | ..............................
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . Timing measurements:
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . get job = 0 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . initial setup = 1 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . payload setup = 2 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . stage-in = 0 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . payload execution = 29421 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . stage-out = 1 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,199 | INFO     | . log creation = 0 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,200 | INFO     | ..............................
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | 
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | job summary report
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | --------------------------------------------------
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | PanDA job id: 6895323833
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | task id: 47556137
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | errors: (none)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | pilot state: finished 
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | transexitcode: 0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | exeerrorcode: 0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | exeerrordiag: 
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | exitcode: 0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | exitmsg: OK
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | cpuconsumptiontime: 86983 s
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | nevents: 1000
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | neventsw: 0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | pid: 3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | pgrp: 3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | corecount: 3
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | event service: False
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | sizes: {0: 2284314, 2: 2284576, 11: 2284604, 29428: 2323732, 29429: 2332732, 29433: 2332788, 29435: 2333162}
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | --------------------------------------------------
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | 
[2025-11-28 05:45:27] 2025-11-28 04:44:34,229 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,241 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,242 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:45:27] 2025-11-28 04:44:34,242 | INFO     | job 6895323833 has completed (purged errors)
[2025-11-28 05:45:27] 2025-11-28 04:44:34,242 | INFO     | overall cleanup function is called
[2025-11-28 05:45:27] 2025-11-28 04:44:35,250 | INFO     | --- collectZombieJob: --- 10, [3865789]
[2025-11-28 05:45:27] 2025-11-28 04:44:35,250 | INFO     | zombie collector waiting for pid 3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:35,250 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:45:27] 2025-11-28 04:44:35,250 | INFO     | collected zombie processes
[2025-11-28 05:45:27] 2025-11-28 04:44:35,250 | INFO     | will attempt to kill all subprocesses of pid=3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:35,300 | INFO     | process IDs to be killed: [3865789] (in reverse order)
[2025-11-28 05:45:27] 2025-11-28 04:44:35,328 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:45:27] 2025-11-28 04:44:35,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:45:27] 2025-11-28 04:44:35,330 | INFO     | did not find any defunct processes belonging to 3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:35,331 | INFO     | did not find any defunct processes belonging to 3865789
[2025-11-28 05:45:27] 2025-11-28 04:44:35,331 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:45:27] 2025-11-28 04:44:35,331 | INFO     | ready for new job
[2025-11-28 05:45:27] 2025-11-28 04:44:35,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:45:27] 2025-11-28 04:44:35,333 | INFO     | ***************************************
[2025-11-28 05:45:27] 2025-11-28 04:44:35,333 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:45:27] 2025-11-28 04:44:35,333 | INFO     | ***************************************
[2025-11-28 05:45:27] 2025-11-28 04:44:35,333 | INFO     | 
[2025-11-28 05:45:27] 2025-11-28 04:44:35,333 | INFO     | architecture information:
[2025-11-28 05:45:27] 2025-11-28 04:44:35,334 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:45:27] 2025-11-28 04:44:35,343 | INFO     | cat /etc/os-release:
[2025-11-28 05:45:27] NAME="CentOS Linux"
[2025-11-28 05:45:27] VERSION="7 (Core)"
[2025-11-28 05:45:27] ID="centos"
[2025-11-28 05:45:27] ID_LIKE="rhel fedora"
[2025-11-28 05:45:27] VERSION_ID="7"
[2025-11-28 05:45:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:45:27] ANSI_COLOR="0;31"
[2025-11-28 05:45:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:45:27] HOME_URL="https://www.centos.org/"
[2025-11-28 05:45:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:45:27] 
[2025-11-28 05:45:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:45:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:45:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:45:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:45:27] 
[2025-11-28 05:45:27] 2025-11-28 04:44:35,343 | INFO     | ***************************************
[2025-11-28 05:45:27] 2025-11-28 04:44:35,846 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | INFO     | sufficient remaining disk space (242826084352 B)
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | INFO     | update_server=False
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:45:27] 2025-11-28 04:44:35,856 | INFO     | aborting loop
[2025-11-28 05:45:27] 2025-11-28 04:44:36,301 | INFO     | all payload control threads have been joined
[2025-11-28 05:45:27] 2025-11-28 04:44:36,415 | INFO     | all data control threads have been joined
[2025-11-28 05:45:27] 2025-11-28 04:44:36,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:45:27] 2025-11-28 04:44:36,861 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:36,861 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:36,861 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:36,960 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:36,973 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,034 | INFO     | all job control threads have been joined
[2025-11-28 05:45:27] 2025-11-28 04:44:37,306 | INFO     | [payload] control thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,308 | INFO     | [job] validate thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,407 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,420 | INFO     | [data] control thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,578 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,607 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:37,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:45:27] 2025-11-28 04:44:38,038 | INFO     | [job] control thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:38,304 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:38,607 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:44:41,908 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:45:27] 2025-11-28 04:45:06,975 | INFO     | PID=3859341 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:45:27] 2025-11-28 04:45:06,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:45:27] 2025-11-28 04:45:06,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:45:27] 2025-11-28 04:45:06,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:45:27] 2025-11-28 04:45:22,340 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:45:27] 2025-11-28 04:45:22,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918543808320)>', '<ExcThread(monitor, started 139918189770496)>']
[2025-11-28 05:45:27] 2025-11-28 04:45:23,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:45:27] 2025-11-28 04:45:23,056 | INFO     | [monitor] control thread has ended
[2025-11-28 05:45:27] 2025-11-28 04:45:27,822 | INFO     | all workflow threads have been joined
[2025-11-28 05:45:27] 2025-11-28 04:45:27,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:45:27] 2025-11-28 04:45:27,823 | INFO     | traces error code: 0
[2025-11-28 05:45:27] 2025-11-28 04:45:27,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:45:27] 2025-11-28 04:45:27,873 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:45:27] 2025-11-28 04:45:27,875 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:45:27] 2025-11-28 04:45:27,877 [wrapper] pilotpid: 3859341
[2025-11-28 05:45:27] 2025-11-28 04:45:27,880 [wrapper] Pilot exit status: 0
[2025-11-28 05:45:27] 2025-11-28 04:45:27,887 [wrapper] pandaids: 6895323833
[2025-11-28 05:45:27] 2025-11-28 04:45:27,906 [wrapper] cleanup supervisor_pilot 3923840 3859342
[2025-11-28 05:45:27] 2025-11-28 04:45:27,908 [wrapper] Test setup, not cleaning
[2025-11-28 05:45:27] 2025-11-28 04:45:27,910 [wrapper] apfmon messages muted
[2025-11-28 05:45:27] 2025-11-28 04:45:27,913 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:45:27] 2025-11-28 04:45:27,915 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:45:27]  *** Error codes and diagnostics ***
[2025-11-28 05:45:27]     "exeErrorCode": 0,
[2025-11-28 05:45:27]     "exeErrorDiag": "",
[2025-11-28 05:45:27]     "pilotErrorCode": 0,
[2025-11-28 05:45:27]     "pilotErrorDiag": "",
[2025-11-28 05:45:27]  *** Listing of results directory ***
[2025-11-28 05:45:27] total 1315816
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:09 queuedata.json
[2025-11-28 05:45:27] -rwx------ 1 boinc boinc     36292 Nov 21 15:10 runpilot2-wrapper.sh
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:45:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:33 run_atlas
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:33 job.xml
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc 410639819 Nov 27 21:33 EVNT.47483658._000015.pool.root.1
[2025-11-28 05:45:27] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:33 shared
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc    590100 Nov 27 21:33 input.tar.gz
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:33 start_atlas.sh
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:33 boinc_setup_complete
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc      6442 Nov 27 21:33 init_data.xml
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:33 boinc_lockfile
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc      2784 Nov 27 21:33 pandaJob.out
[2025-11-28 05:45:27] -rw------- 1 boinc boinc    991500 Nov 27 21:33 agis_schedconf.cvmfs.json
[2025-11-28 05:45:27] drwx------ 5 boinc boinc      4096 Nov 27 21:33 pilot3
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc       531 Nov 28 05:40 boinc_task_state.xml
[2025-11-28 05:45:27] -rw------- 1 boinc boinc 922199405 Nov 28 05:44 HITS.47556137._000142.pool.root.1
[2025-11-28 05:45:27] -rw------- 1 boinc boinc      1025 Nov 28 05:44 memory_monitor_summary.json
[2025-11-28 05:45:27] -rw------- 1 boinc boinc   1516240 Nov 28 05:44 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:45:27] -rw------- 1 boinc boinc   1175665 Nov 28 05:44 log.47556137._000142.job.log.tgz.1
[2025-11-28 05:45:27] -rw------- 1 boinc boinc        95 Nov 28 05:44 pilot_heartbeat.json
[2025-11-28 05:45:27] -rw------- 1 boinc boinc      8574 Nov 28 05:44 heartbeat.json
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:45 boinc_mmap_file
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc        28 Nov 28 05:45 wrapper_checkpoint.txt
[2025-11-28 05:45:27] -rw------- 1 boinc boinc      4752 Nov 28 05:45 pilotlog.txt
[2025-11-28 05:45:27] -rw------- 1 boinc boinc   4142549 Nov 28 05:45 log.47556137._000142.job.log.1
[2025-11-28 05:45:27] -rw------- 1 boinc boinc       353 Nov 28 05:45 output.list
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:45 runtime_log
[2025-11-28 05:45:27] -rw------- 1 boinc boinc   5335040 Nov 28 05:45 result.tar.gz
[2025-11-28 05:45:27] -rw------- 1 boinc boinc       666 Nov 28 05:45 z5zNDmD1gg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUeHKDmCmihNn.diag
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc      8903 Nov 28 05:45 runtime_log.err
[2025-11-28 05:45:27] -rw-r--r-- 1 boinc boinc     21413 Nov 28 05:45 stderr.txt
[2025-11-28 05:45:27] HITS file was successfully produced:
[2025-11-28 05:45:27] -rw------- 1 boinc boinc 922199405 Nov 28 05:44 shared/HITS.pool.root.1
[2025-11-28 05:45:27]  *** Contents of shared directory: ***
[2025-11-28 05:45:27] total 1307420
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc 410639819 Nov 27 21:33 ATLAS.root_0
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc    590100 Nov 27 21:33 input.tar.gz
[2025-11-28 05:45:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:33 start_atlas.sh
[2025-11-28 05:45:27] -rw------- 1 boinc boinc 922199405 Nov 28 05:44 HITS.pool.root.1
[2025-11-28 05:45:27] -rw------- 1 boinc boinc   5335040 Nov 28 05:45 result.tar.gz
05:45:29 (3855621): run_atlas exited; CPU time 87033.502180
05:45:29 (3855621): called boinc_finish(0)

</stderr_txt>
]]>

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