Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:23:47 (713551): wrapper (7.7.26015): starting
11:23:47 (713551): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 11:23:47] Arguments: --nthreads 3
[2025-11-22 11:23:47] Threads: 3
[2025-11-22 11:23:47] Checking for CVMFS
[2025-11-22 11:23:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 11:23:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 11:23:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 11:23:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 11:23:47] 2.9.2.0 3971706 660 68152 153168 2 88 34654417 36864000 0 130560 0 2760884 99.998 27833 6932 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 11:23:47] CVMFS is ok
[2025-11-22 11:23:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 11:23:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 11:23:47] Further information can be found at the LHC@home message board.
[2025-11-22 11:23:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 11:23:47] Checking for apptainer binary...
[2025-11-22 11:23:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 11:23:47] Running /usr/bin/apptainer --version
[2025-11-22 11:23:47] apptainer version 1.4.1-1.1
[2025-11-22 11:23:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 11:23:47] thA335
[2025-11-22 11:23:47] apptainer works
[2025-11-22 11:23:47] Set ATHENA_PROC_NUMBER=3
[2025-11-22 11:23:47] Set ATHENA_CORE_NUMBER=3
[2025-11-22 11:23:47] Starting ATLAS job with PandaID=6895324207
[2025-11-22 11:23:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 11:28:06]  *** The last 200 lines of the pilot log: ***
[2025-11-22 11:28:06] 2025-11-22 10:27:18,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 11:28:06] 2025-11-22 10:27:18,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:28:06] 2025-11-22 10:27:18,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:28:06] 2025-11-22 10:27:18,908 | INFO     | aborting loop
[2025-11-22 11:28:06] 2025-11-22 10:27:19,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 11:28:06] 2025-11-22 10:27:19,301 | INFO     | all job control threads have been joined
[2025-11-22 11:28:06] 2025-11-22 10:27:19,418 | INFO     | all data control threads have been joined
[2025-11-22 11:28:06] 2025-11-22 10:27:19,837 | INFO     | all payload control threads have been joined
[2025-11-22 11:28:06] 2025-11-22 10:27:19,913 | INFO     | [job] queue monitor thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:19,914 | INFO     | [job] retrieve thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:19,915 | INFO     | [job] job monitor thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,308 | INFO     | [job] control thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,424 | INFO     | [data] control thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,606 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,743 | INFO     | [payload] validate_post thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,803 | INFO     | [job] validate thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,844 | INFO     | [payload] control thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,874 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,938 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:20,946 | INFO     | [data] copytool_in thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:21,131 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:21,196 | INFO     | [data] copytool_out thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:21,314 | INFO     | [payload] failed_post thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:21,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 11:28:06] 2025-11-22 10:27:25,499 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 11:28:06] 2025-11-22 10:27:48,654 | INFO     | PID=717275 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 11:28:06] 2025-11-22 10:27:48,654 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 11:28:06] 2025-11-22 10:27:48,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 11:28:06] 2025-11-22 10:27:48,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 11:28:06] 2025-11-22 10:27:59,647 | INFO     | [monitor] cgroup control has ended
[2025-11-22 11:28:06] 2025-11-22 10:28:01,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043424614208)>', '<ExcThread(monitor, started 140042576066304)>']
[2025-11-22 11:28:06] 2025-11-22 10:28:01,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 11:28:06] 2025-11-22 10:28:01,722 | INFO     | [monitor] control thread has ended
[2025-11-22 11:28:06] 2025-11-22 10:28:06,362 | INFO     | all workflow threads have been joined
[2025-11-22 11:28:06] 2025-11-22 10:28:06,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 11:28:06] 2025-11-22 10:28:06,363 | INFO     | traces error code: 0
[2025-11-22 11:28:06] 2025-11-22 10:28:06,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 11:28:06] 2025-11-22 10:28:06,409 [wrapper] ==== pilot stdout END ====
[2025-11-22 11:28:06] 2025-11-22 10:28:06,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 11:28:06] 2025-11-22 10:28:06,416 [wrapper] pilotpid: 717275
[2025-11-22 11:28:06] 2025-11-22 10:28:06,419 [wrapper] Pilot exit status: 0
[2025-11-22 11:28:06] 2025-11-22 10:28:06,426 [wrapper] pandaids: 6895324207
[2025-11-22 11:28:06] 2025-11-22 10:28:06,443 [wrapper] cleanup supervisor_pilot  717281 717276
[2025-11-22 11:28:06] 2025-11-22 10:28:06,446 [wrapper] Test setup, not cleaning
[2025-11-22 11:28:06] 2025-11-22 10:28:06,449 [wrapper] apfmon messages muted
[2025-11-22 11:28:06] 2025-11-22 10:28:06,451 [wrapper] ==== wrapper stdout END ====
[2025-11-22 11:28:06] 2025-11-22 10:28:06,454 [wrapper] ==== wrapper stderr END ====
[2025-11-22 11:28:06]  *** Error codes and diagnostics ***
[2025-11-22 11:28:06]     "exeErrorCode": 65,
[2025-11-22 11:28:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 11:28:06]     "pilotErrorCode": 1305,
[2025-11-22 11:28:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 11:28:06]  *** Listing of results directory ***
[2025-11-22 11:28:06] total 404540
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-22 11:28:06] -rwx------ 1 boinc boinc     36292 Nov 21 15:15 runpilot2-wrapper.sh
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:15 queuedata.json
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc       100 Nov 22 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 11:28:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 11:23 run_atlas
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc       105 Nov 22 11:23 job.xml
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc 410047865 Nov 22 11:23 EVNT.47483658._000018.pool.root.1
[2025-11-22 11:28:06] drwxrwx--x 2 boinc boinc      4096 Nov 22 11:23 shared
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc    590095 Nov 22 11:23 input.tar.gz
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 11:23 start_atlas.sh
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc         0 Nov 22 11:23 boinc_setup_complete
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      6194 Nov 22 11:23 init_data.xml
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc         0 Nov 22 11:23 boinc_lockfile
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      2784 Nov 22 11:23 pandaJob.out
[2025-11-22 11:28:06] -rw------- 1 boinc boinc    989768 Nov 22 11:23 agis_schedconf.cvmfs.json
[2025-11-22 11:28:06] -rw------- 1 boinc boinc   1526164 Nov 22 11:23 agis_ddmendpoints.agis.ALL.json
[2025-11-22 11:28:06] drwx------ 5 boinc boinc      4096 Nov 22 11:23 pilot3
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc       522 Nov 22 11:24 boinc_task_state.xml
[2025-11-22 11:28:06] -rw------- 1 boinc boinc       952 Nov 22 11:25 memory_monitor_summary.json
[2025-11-22 11:28:06] -rw------- 1 boinc boinc     55861 Nov 22 11:25 log.47556137._000174.job.log.tgz.1
[2025-11-22 11:28:06] -rw------- 1 boinc boinc        95 Nov 22 11:27 pilot_heartbeat.json
[2025-11-22 11:28:06] -rw------- 1 boinc boinc      8413 Nov 22 11:27 heartbeat.json
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc        22 Nov 22 11:28 wrapper_checkpoint.txt
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      8192 Nov 22 11:28 boinc_mmap_file
[2025-11-22 11:28:06] -rw------- 1 boinc boinc      4751 Nov 22 11:28 pilotlog.txt
[2025-11-22 11:28:06] -rw------- 1 boinc boinc     93897 Nov 22 11:28 log.47556137._000174.job.log.1
[2025-11-22 11:28:06] -rw------- 1 boinc boinc       186 Nov 22 11:28 output.list
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc       620 Nov 22 11:28 runtime_log
[2025-11-22 11:28:06] -rw------- 1 boinc boinc    174080 Nov 22 11:28 result.tar.gz
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      8744 Nov 22 11:28 runtime_log.err
[2025-11-22 11:28:06] -rw------- 1 boinc boinc       649 Nov 22 11:28 NwRLDmL6gg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmteHKDmqfMTQm.diag
[2025-11-22 11:28:06] -rw-r--r-- 1 boinc boinc      7706 Nov 22 11:28 stderr.txt
[2025-11-22 11:28:06] No HITS result produced
[2025-11-22 11:28:06]  *** Contents of shared directory: ***
[2025-11-22 11:28:06] total 401212
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc 410047865 Nov 22 11:23 ATLAS.root_0
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc    590095 Nov 22 11:23 input.tar.gz
[2025-11-22 11:28:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 11:23 start_atlas.sh
[2025-11-22 11:28:06] -rw------- 1 boinc boinc    174080 Nov 22 11:28 result.tar.gz
11:28:07 (713551): run_atlas exited; CPU time 32.260095
11:28:07 (713551): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN