Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:39:15 (496808): wrapper (7.7.26015): starting
06:39:15 (496808): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:39:15] Arguments: --nthreads 4
[2025-11-22 06:39:15] Threads: 4
[2025-11-22 06:39:15] Checking for CVMFS
[2025-11-22 06:39:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:39:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:39:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:39:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:39:16] 2.13.2.0 489841 0 26076 153170 3 19 1785148 4096001 92 130560 0 15310 99.877 2845 1591 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:39:16] CVMFS is ok
[2025-11-22 06:39:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:39:16] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:39:16] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:39:16] Further information can be found at the LHC@home message board.
[2025-11-22 06:39:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:39:16] Checking for apptainer binary...
[2025-11-22 06:39:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:39:16] Running /usr/bin/apptainer --version
[2025-11-22 06:39:16] apptainer version 1.4.3
[2025-11-22 06:39:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:39:16] SETI64-Ubuntu
[2025-11-22 06:39:16] apptainer works
[2025-11-22 06:39:16] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:39:16] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:39:16] Starting ATLAS job with PandaID=6895323791
[2025-11-22 06:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:57:22]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:57:22] 2025-11-22 19:56:49,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,914 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:57:22] 2025-11-22 19:56:49,926 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2055.2122734375
[2025-11-22 14:57:22] 2025-11-22 19:56:49,941 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/15/PanDA_Pilot-6895323791/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,941 | INFO     | extracted standard info from prmon json
[2025-11-22 14:57:22] 2025-11-22 19:56:49,941 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:57:22] 2025-11-22 19:56:49,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:57:22] 2025-11-22 19:56:49,946 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:57:22] 2025-11-22 19:56:49,946 | INFO     | sum of square deviations: 36257944940.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,950 | INFO     | sum of deviations: 287938164884.99994
[2025-11-22 14:57:22] 2025-11-22 19:56:49,950 | INFO     | mean x: 1763826471.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,950 | INFO     | mean y: 2231021.325153374
[2025-11-22 14:57:22] 2025-11-22 19:56:49,950 | INFO     | intersect: -14004987481.42669
[2025-11-22 14:57:22] 2025-11-22 19:56:49,950 | INFO     | chi2: 5.159546099259856
[2025-11-22 14:57:22] 2025-11-22 19:56:49,951 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | sum of deviations: 363622139144.4998
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | mean x: 1763826318.5
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | mean y: 2241471.667355372
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | intersect: -18240641870.155674
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | chi2: 3.5880525411949793
[2025-11-22 14:57:22] 2025-11-22 19:56:49,954 | INFO     | current chi2=3.5880525411949793 (change=30.457980757072985 %)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,955 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,958 | INFO     | sum of deviations: 357406922679.99994
[2025-11-22 14:57:22] 2025-11-22 19:56:49,958 | INFO     | mean x: 1763826166.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | mean y: 2240592.653444676
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | intersect: -18496223452.594448
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | chi2: 3.587361730364297
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | current chi2=3.587361730364297 (change=0.019253085699022707 %)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | right removable region: 478
[2025-11-22 14:57:22] 2025-11-22 19:56:49,959 | INFO     | sum of square deviations: 35157068485.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | sum of deviations: 154378843828.5
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | mean x: 1763826623.5
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | mean y: 2249507.77892562
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | intersect: -7742921707.677635
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | chi2: 1.8551777393095485
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | current chi2=1.8551777393095485 (change=64.04378013841806 %)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,963 | INFO     | sum of square deviations: 34078704080.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | sum of deviations: 124640506634.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | mean x: 1763826776.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | mean y: 2253698.8267223383
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | intersect: -6448820921.240076
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | chi2: 1.6475066080989653
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | current chi2=1.6475066080989653 (change=11.194136648484868 %)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,967 | INFO     | left removable region: 20
[2025-11-22 14:57:22] 2025-11-22 19:56:49,968 | INFO     | sum of square deviations: 29790156694.5
[2025-11-22 14:57:22] 2025-11-22 19:56:49,970 | INFO     | sum of deviations: 170665212753.0
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | mean x: 1763826745.5
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | mean y: 2267588.5502183405
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | intersect: -10102542193.661016
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | chi2: 0.028347717551286157
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | current memory leak: 5.73 B/s (using 458 data points, chi2=0.03)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,971 | INFO     | could have reported an average CPU frequency of 2357 MHz (20 samples)
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | ..............................
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . Timing measurements:
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . get job = 0 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . initial setup = 3 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . payload setup = 4 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . stage-in = 0 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . payload execution = 29813 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . stage-out = 3 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | . log creation = 0 s
[2025-11-22 14:57:22] 2025-11-22 19:56:49,972 | INFO     | ..............................
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | 
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | job summary report
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | --------------------------------------------------
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | PanDA job id: 6895323791
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | task id: 47556137
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | errors: (none)
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | pilot state: finished 
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | transexitcode: 0
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | exeerrorcode: 0
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | exeerrordiag: 
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | exitcode: 0
[2025-11-22 14:57:22] 2025-11-22 19:56:50,016 | INFO     | exitmsg: OK
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | cpuconsumptiontime: 117576 s
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | nevents: 1000
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | neventsw: 0
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | pid: 527045
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | pgrp: 527045
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | corecount: 4
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | event service: False
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | sizes: {0: 2297922, 1: 2298793, 4: 2299055, 11: 2299083, 29821: 2337845, 29824: 2346869, 29826: 2347053, 29831: 2347299}
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | --------------------------------------------------
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | 
[2025-11-22 14:57:22] 2025-11-22 19:56:50,017 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/15
[2025-11-22 14:57:22] 2025-11-22 19:56:50,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | job 6895323791 has completed (purged errors)
[2025-11-22 14:57:22] 2025-11-22 19:56:50,035 | INFO     | overall cleanup function is called
[2025-11-22 14:57:22] 2025-11-22 19:56:51,047 | INFO     | --- collectZombieJob: --- 10, [527045]
[2025-11-22 14:57:22] 2025-11-22 19:56:51,047 | INFO     | zombie collector waiting for pid 527045
[2025-11-22 14:57:22] 2025-11-22 19:56:51,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:57:22] 2025-11-22 19:56:51,048 | INFO     | collected zombie processes
[2025-11-22 14:57:22] 2025-11-22 19:56:51,048 | INFO     | will attempt to kill all subprocesses of pid=527045
[2025-11-22 14:57:22] 2025-11-22 19:56:51,319 | INFO     | process IDs to be killed: [527045] (in reverse order)
[2025-11-22 14:57:22] 2025-11-22 19:56:51,402 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:57:22] 2025-11-22 19:56:51,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:57:22] 2025-11-22 19:56:51,410 | INFO     | did not find any defunct processes belonging to 527045
[2025-11-22 14:57:22] 2025-11-22 19:56:51,418 | INFO     | did not find any defunct processes belonging to 527045
[2025-11-22 14:57:22] 2025-11-22 19:56:51,419 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:57:22] 2025-11-22 19:56:51,419 | INFO     | ready for new job
[2025-11-22 14:57:22] 2025-11-22 19:56:51,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:57:22] 2025-11-22 19:56:51,421 | INFO     | ***************************************
[2025-11-22 14:57:22] 2025-11-22 19:56:51,421 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:57:22] 2025-11-22 19:56:51,421 | INFO     | ***************************************
[2025-11-22 14:57:22] 2025-11-22 19:56:51,421 | INFO     | 
[2025-11-22 14:57:22] 2025-11-22 19:56:51,426 | INFO     | architecture information:
[2025-11-22 14:57:22] 2025-11-22 19:56:51,427 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:57:22] 2025-11-22 19:56:51,438 | INFO     | cat /etc/os-release:
[2025-11-22 14:57:22] NAME="CentOS Linux"
[2025-11-22 14:57:22] VERSION="7 (Core)"
[2025-11-22 14:57:22] ID="centos"
[2025-11-22 14:57:22] ID_LIKE="rhel fedora"
[2025-11-22 14:57:22] VERSION_ID="7"
[2025-11-22 14:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:57:22] ANSI_COLOR="0;31"
[2025-11-22 14:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:57:22] HOME_URL="https://www.centos.org/"
[2025-11-22 14:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:57:22] 
[2025-11-22 14:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:57:22] 
[2025-11-22 14:57:22] 2025-11-22 19:56:51,438 | INFO     | ***************************************
[2025-11-22 14:57:22] 2025-11-22 19:56:51,941 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/15
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | INFO     | sufficient remaining disk space (367358115840 B)
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | INFO     | update_server=False
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:57:22] 2025-11-22 19:56:51,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:57:22] 2025-11-22 19:56:51,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:57:22] 2025-11-22 19:56:52,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:57:22] 2025-11-22 19:56:52,133 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:57:22] 2025-11-22 19:56:52,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:57:22] 2025-11-22 19:56:52,134 | INFO     | will abort loop
[2025-11-22 14:57:22] 2025-11-22 19:56:52,338 | INFO     | all payload control threads have been joined
[2025-11-22 14:57:22] 2025-11-22 19:56:52,783 | INFO     | all data control threads have been joined
[2025-11-22 14:57:22] 2025-11-22 19:56:52,960 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:52,960 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:52,981 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,020 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,139 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,228 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,344 | INFO     | [payload] control thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,394 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,566 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,593 | INFO     | all job control threads have been joined
[2025-11-22 14:57:22] 2025-11-22 19:56:53,613 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,786 | INFO     | [data] control thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:53,960 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:54,266 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:54,366 | INFO     | [job] validate thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:54,598 | INFO     | [job] control thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:56:55,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:57:22] 2025-11-22 19:56:59,191 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:57:22] 2025-11-22 19:57:04,948 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:57:22] 2025-11-22 19:57:06,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135026354267968)>', '<ExcThread(monitor, started 135025517393664)>']
[2025-11-22 14:57:22] 2025-11-22 19:57:11,775 | INFO     | all workflow threads have been joined
[2025-11-22 14:57:22] 2025-11-22 19:57:11,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:57:22] 2025-11-22 19:57:11,775 | INFO     | traces error code: 0
[2025-11-22 14:57:22] 2025-11-22 19:57:11,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:57:22] 2025-11-22 19:57:22,323 | INFO     | PID=504931 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 14:57:22] 2025-11-22 19:57:22,323 | INFO     | .. there are 7 such processes running
[2025-11-22 14:57:22] 2025-11-22 19:57:22,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:57:22] 2025-11-22 19:57:22,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:57:22] 2025-11-22 19:57:22,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:57:22] 2025-11-22 19:57:22,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:57:22] 2025-11-22 19:57:22,324 | INFO     | [monitor] control thread has ended
[2025-11-22 14:57:22] 2025-11-22 19:57:22,395 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:57:22] 2025-11-22 19:57:22,398 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:57:22] 2025-11-22 19:57:22,400 [wrapper] pilotpid: 504931
[2025-11-22 14:57:22] 2025-11-22 19:57:22,403 [wrapper] Pilot exit status: 0
[2025-11-22 14:57:22] 2025-11-22 19:57:22,410 [wrapper] pandaids: 6895323791
[2025-11-22 14:57:22] 2025-11-22 19:57:22,469 [wrapper] cleanup supervisor_pilot 1137549 504932
[2025-11-22 14:57:22] 2025-11-22 19:57:22,471 [wrapper] Test setup, not cleaning
[2025-11-22 14:57:22] 2025-11-22 19:57:22,474 [wrapper] apfmon messages muted
[2025-11-22 14:57:22] 2025-11-22 19:57:22,476 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:57:22] 2025-11-22 19:57:22,477 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:57:22]  *** Error codes and diagnostics ***
[2025-11-22 14:57:22]     "exeErrorCode": 0,
[2025-11-22 14:57:22]     "exeErrorDiag": "",
[2025-11-22 14:57:22]     "pilotErrorCode": 0,
[2025-11-22 14:57:22]     "pilotErrorDiag": "",
[2025-11-22 14:57:22]  *** Listing of results directory ***
[2025-11-22 14:57:22] total 1311284
[2025-11-22 14:57:22] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-22 14:57:22] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 08:59 runpilot2-wrapper.sh
[2025-11-22 14:57:22] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 08:59 queuedata.json
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:57:22] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:39 run_atlas
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:39 job.xml
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd 410252996 Nov 22 06:39 EVNT.47483658._000010.pool.root.1
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:39 start_atlas.sh
[2025-11-22 14:57:22] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:39 shared
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd    590096 Nov 22 06:39 input.tar.gz
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:39 init_data.xml
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:39 boinc_setup_complete
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:39 boinc_lockfile
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd      2782 Nov 22 06:39 pandaJob.out
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:39 agis_schedconf.cvmfs.json
[2025-11-22 14:57:22] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:39 pilot3
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 22 14:51 boinc_task_state.xml
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd 917451959 Nov 22 14:56 HITS.47556137._000100.pool.root.1
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd      1041 Nov 22 14:56 memory_monitor_summary.json
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd        95 Nov 22 14:56 pilot_heartbeat.json
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 14:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd   1321520 Nov 22 14:56 log.47556137._000100.job.log.tgz.1
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd      8579 Nov 22 14:56 heartbeat.json
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 14:57 boinc_mmap_file
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 22 14:57 wrapper_checkpoint.txt
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd       821 Nov 22 14:57 pilotlog.txt
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd   4243316 Nov 22 14:57 log.47556137._000100.job.log.1
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd       353 Nov 22 14:57 output.list
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 14:57 runtime_log
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd   5580800 Nov 22 14:57 result.tar.gz
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd       661 Nov 22 14:57 uUWMDmDrgg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7dHKDm0xB3vn.diag
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 14:57 runtime_log.err
[2025-11-22 14:57:22] -rw-rw-r-- 1 whitlerd whitlerd     21347 Nov 22 14:57 stderr.txt
[2025-11-22 14:57:22] HITS file was successfully produced:
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd 917451959 Nov 22 14:56 shared/HITS.pool.root.1
[2025-11-22 14:57:22]  *** Contents of shared directory: ***
[2025-11-22 14:57:22] total 1302648
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd 410252996 Nov 22 06:39 ATLAS.root_0
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:39 start_atlas.sh
[2025-11-22 14:57:22] -rw-r--r-- 2 whitlerd whitlerd    590096 Nov 22 06:39 input.tar.gz
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd 917451959 Nov 22 14:56 HITS.pool.root.1
[2025-11-22 14:57:22] -rw------- 1 whitlerd whitlerd   5580800 Nov 22 14:57 result.tar.gz
14:57:24 (496808): run_atlas exited; CPU time 118306.734454
14:57:24 (496808): called boinc_finish(0)

</stderr_txt>
]]>

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