Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:19:23 (799894): wrapper (7.7.26015): starting
00:19:23 (799894): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 00:19:23] Arguments: --nthreads 3
[2025-11-25 00:19:23] Threads: 3
[2025-11-25 00:19:23] Checking for CVMFS
[2025-11-25 00:19:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:19:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:19:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:19:24] 2.9.2.0 3803052 8995 69368 153263 3 80 34582569 36864001 0 130560 0 3228128 99.920 477669 7381 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 00:19:24] CVMFS is ok
[2025-11-25 00:19:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:19:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:19:24] Further information can be found at the LHC@home message board.
[2025-11-25 00:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:19:24] Checking for apptainer binary...
[2025-11-25 00:19:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:19:24] Running /usr/bin/apptainer --version
[2025-11-25 00:19:24] apptainer version 1.4.1-1.1
[2025-11-25 00:19:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:19:24] thA333
[2025-11-25 00:19:24] apptainer works
[2025-11-25 00:19:24] Set ATHENA_PROC_NUMBER=3
[2025-11-25 00:19:24] Set ATHENA_CORE_NUMBER=3
[2025-11-25 00:19:24] Starting ATLAS job with PandaID=6894268662
[2025-11-25 00:19:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:56:25]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:56:25] 2025-11-25 07:55:44,492 | INFO     | ready for new job
[2025-11-25 08:56:25] 2025-11-25 07:55:44,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:56:25] 2025-11-25 07:55:44,493 | INFO     | ***************************************
[2025-11-25 08:56:25] 2025-11-25 07:55:44,494 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:56:25] 2025-11-25 07:55:44,494 | INFO     | ***************************************
[2025-11-25 08:56:25] 2025-11-25 07:55:44,494 | INFO     | 
[2025-11-25 08:56:25] 2025-11-25 07:55:44,494 | INFO     | architecture information:
[2025-11-25 08:56:25] 2025-11-25 07:55:44,494 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:56:25] 2025-11-25 07:55:44,503 | INFO     | cat /etc/os-release:
[2025-11-25 08:56:25] NAME="CentOS Linux"
[2025-11-25 08:56:25] VERSION="7 (Core)"
[2025-11-25 08:56:25] ID="centos"
[2025-11-25 08:56:25] ID_LIKE="rhel fedora"
[2025-11-25 08:56:25] VERSION_ID="7"
[2025-11-25 08:56:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:56:25] ANSI_COLOR="0;31"
[2025-11-25 08:56:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:56:25] HOME_URL="https://www.centos.org/"
[2025-11-25 08:56:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:56:25] 
[2025-11-25 08:56:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:56:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:56:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:56:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:56:25] 
[2025-11-25 08:56:25] 2025-11-25 07:55:44,503 | INFO     | ***************************************
[2025-11-25 08:56:25] 2025-11-25 07:55:45,006 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | INFO     | sufficient remaining disk space (222528798720 B)
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | INFO     | update_server=False
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:56:25] 2025-11-25 07:55:45,020 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:56:25] 2025-11-25 07:55:45,149 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 08:56:25] 2025-11-25 07:55:45,150 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 08:56:25] 2025-11-25 07:55:45,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:56:25] 2025-11-25 07:55:45,150 | INFO     | will abort loop
[2025-11-25 08:56:25] 2025-11-25 07:55:45,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:56:25] 2025-11-25 07:55:45,621 | INFO     | all job control threads have been joined
[2025-11-25 08:56:25] 2025-11-25 07:55:45,933 | INFO     | all data control threads have been joined
[2025-11-25 08:56:25] 2025-11-25 07:55:46,026 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,026 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,139 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,156 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,189 | INFO     | all payload control threads have been joined
[2025-11-25 08:56:25] 2025-11-25 07:55:46,435 | INFO     | [job] validate thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,508 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,627 | INFO     | [job] control thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,718 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,732 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:46,939 | INFO     | [data] control thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:47,175 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:47,195 | INFO     | [payload] control thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:47,197 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:47,472 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:49,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:55:55,418 | INFO     | job.realtimelogging is not enabled
[2025-11-25 08:56:25] 2025-11-25 07:55:56,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:56:25] 2025-11-25 07:56:15,772 | INFO     | PID=803627 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 08:56:25] 2025-11-25 07:56:15,773 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:56:25] 2025-11-25 07:56:15,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:56:25] 2025-11-25 07:56:15,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:56:25] 2025-11-25 07:56:19,778 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:56:25] 2025-11-25 07:56:20,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351147738944)>', '<ExcThread(monitor, started 140350622504704)>']
[2025-11-25 08:56:25] 2025-11-25 07:56:20,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:56:25] 2025-11-25 07:56:20,800 | INFO     | [monitor] control thread has ended
[2025-11-25 08:56:25] 2025-11-25 07:56:25,106 | INFO     | all workflow threads have been joined
[2025-11-25 08:56:25] 2025-11-25 07:56:25,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:56:25] 2025-11-25 07:56:25,107 | INFO     | traces error code: 0
[2025-11-25 08:56:25] 2025-11-25 07:56:25,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:56:25] 2025-11-25 07:56:25,153 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:56:25] 2025-11-25 07:56:25,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:56:25] 2025-11-25 07:56:25,159 [wrapper] pilotpid: 803627
[2025-11-25 08:56:25] 2025-11-25 07:56:25,162 [wrapper] Pilot exit status: 0
[2025-11-25 08:56:25] 2025-11-25 07:56:25,170 [wrapper] pandaids: 6894268662
[2025-11-25 08:56:25] 2025-11-25 07:56:25,186 [wrapper] cleanup supervisor_pilot  864454 803628
[2025-11-25 08:56:25] 2025-11-25 07:56:25,188 [wrapper] Test setup, not cleaning
[2025-11-25 08:56:25] 2025-11-25 07:56:25,191 [wrapper] apfmon messages muted
[2025-11-25 08:56:25] 2025-11-25 07:56:25,193 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:56:25] 2025-11-25 07:56:25,196 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:56:25]  *** Error codes and diagnostics ***
[2025-11-25 08:56:25]     "exeErrorCode": 0,
[2025-11-25 08:56:25]     "exeErrorDiag": "",
[2025-11-25 08:56:25]     "pilotErrorCode": 0,
[2025-11-25 08:56:25]     "pilotErrorDiag": "",
[2025-11-25 08:56:25]  *** Listing of results directory ***
[2025-11-25 08:56:25] total 1298696
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc    576529 Nov 21 07:04 pilot3.tar.gz
[2025-11-25 08:56:25] -rwx------ 1 boinc boinc     36292 Nov 21 07:05 runpilot2-wrapper.sh
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      5112 Nov 21 07:05 queuedata.json
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc       100 Nov 25 00:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:56:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 00:19 run_atlas
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc       105 Nov 25 00:19 job.xml
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc 409975754 Nov 25 00:19 EVNT.47493127._002274.pool.root.1
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc    590103 Nov 25 00:19 input.tar.gz
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:19 start_atlas.sh
[2025-11-25 08:56:25] drwxrwx--x 2 boinc boinc      4096 Nov 25 00:19 shared
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:19 boinc_setup_complete
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      6198 Nov 25 00:19 init_data.xml
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:19 boinc_lockfile
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      2786 Nov 25 00:19 pandaJob.out
[2025-11-25 08:56:25] -rw------- 1 boinc boinc    991801 Nov 25 00:19 agis_schedconf.cvmfs.json
[2025-11-25 08:56:25] drwx------ 5 boinc boinc      4096 Nov 25 00:19 pilot3
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc       532 Nov 25 08:51 boinc_task_state.xml
[2025-11-25 08:56:25] -rw------- 1 boinc boinc 904881770 Nov 25 08:55 HITS.47533967._002457.pool.root.1
[2025-11-25 08:56:25] -rw------- 1 boinc boinc      1023 Nov 25 08:55 memory_monitor_summary.json
[2025-11-25 08:56:25] -rw------- 1 boinc boinc   1516227 Nov 25 08:55 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:56:25] -rw------- 1 boinc boinc   1196722 Nov 25 08:55 log.47533967._002457.job.log.tgz.1
[2025-11-25 08:56:25] -rw------- 1 boinc boinc      8560 Nov 25 08:55 heartbeat.json
[2025-11-25 08:56:25] -rw------- 1 boinc boinc        95 Nov 25 08:56 pilot_heartbeat.json
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      8192 Nov 25 08:56 boinc_mmap_file
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc        28 Nov 25 08:56 wrapper_checkpoint.txt
[2025-11-25 08:56:25] -rw------- 1 boinc boinc      5009 Nov 25 08:56 pilotlog.txt
[2025-11-25 08:56:25] -rw------- 1 boinc boinc   4350694 Nov 25 08:56 log.47533967._002457.job.log.1
[2025-11-25 08:56:25] -rw------- 1 boinc boinc       353 Nov 25 08:56 output.list
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc       620 Nov 25 08:56 runtime_log
[2025-11-25 08:56:25] -rw------- 1 boinc boinc   5570560 Nov 25 08:56 result.tar.gz
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      8898 Nov 25 08:56 runtime_log.err
[2025-11-25 08:56:25] -rw------- 1 boinc boinc       665 Nov 25 08:56 HmMLDmHSZg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyOHKDmCG3lvn.diag
[2025-11-25 08:56:25] -rw-r--r-- 1 boinc boinc      9846 Nov 25 08:56 stderr.txt
[2025-11-25 08:56:25] HITS file was successfully produced:
[2025-11-25 08:56:25] -rw------- 1 boinc boinc 904881770 Nov 25 08:55 shared/HITS.pool.root.1
[2025-11-25 08:56:25]  *** Contents of shared directory: ***
[2025-11-25 08:56:25] total 1290088
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc 409975754 Nov 25 00:19 ATLAS.root_0
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc    590103 Nov 25 00:19 input.tar.gz
[2025-11-25 08:56:25] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:19 start_atlas.sh
[2025-11-25 08:56:25] -rw------- 1 boinc boinc 904881770 Nov 25 08:55 HITS.pool.root.1
[2025-11-25 08:56:25] -rw------- 1 boinc boinc   5570560 Nov 25 08:56 result.tar.gz
08:56:26 (799894): run_atlas exited; CPU time 91511.973842
08:56:26 (799894): called boinc_finish(0)

</stderr_txt>
]]>

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