Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:38:46 (489628): wrapper (7.7.26015): starting
06:38:46 (489628): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 06:38:46] Arguments: --nthreads 4
[2025-11-22 06:38:46] Threads: 4
[2025-11-22 06:38:46] Checking for CVMFS
[2025-11-22 06:38:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:38:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:38:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:38:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:38:50] 2.13.2.0 489841 0 24028 153170 3 1 1775743 4096000 0 130560 0 0 0.000 1291 1409 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:38:50] CVMFS is ok
[2025-11-22 06:38:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:38:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:38:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:38:50] Further information can be found at the LHC@home message board.
[2025-11-22 06:38:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:38:50] Checking for apptainer binary...
[2025-11-22 06:38:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:38:50] Running /usr/bin/apptainer --version
[2025-11-22 06:38:50] apptainer version 1.4.3
[2025-11-22 06:38:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:38:50] SETI64-Ubuntu
[2025-11-22 06:38:50] apptainer works
[2025-11-22 06:38:50] Set ATHENA_PROC_NUMBER=4
[2025-11-22 06:38:50] Set ATHENA_CORE_NUMBER=4
[2025-11-22 06:38:50] Starting ATLAS job with PandaID=6895323772
[2025-11-22 06:38:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:12:52]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:12:52] 2025-11-22 20:11:49,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,220 | INFO     | time since job start (30765s) is within the limit (172800.0s)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,718 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:12:52] 2025-11-22 20:11:50,730 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 1963.0875078125
[2025-11-22 15:12:52] 2025-11-22 20:11:50,744 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/14/PanDA_Pilot-6895323772/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,745 | INFO     | extracted standard info from prmon json
[2025-11-22 15:12:52] 2025-11-22 20:11:50,745 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:12:52] 2025-11-22 20:11:50,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:12:52] 2025-11-22 20:11:50,750 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:12:52] 2025-11-22 20:11:50,750 | INFO     | sum of square deviations: 39697972230.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,754 | INFO     | sum of deviations: 210187119707.00003
[2025-11-22 15:12:52] 2025-11-22 20:11:50,754 | INFO     | mean x: 1763826913.5
[2025-11-22 15:12:52] 2025-11-22 20:11:50,754 | INFO     | mean y: 2221621.4404761903
[2025-11-22 15:12:52] 2025-11-22 20:11:50,754 | INFO     | intersect: -9336635700.095135
[2025-11-22 15:12:52] 2025-11-22 20:11:50,754 | INFO     | chi2: 6.997726572342172
[2025-11-22 15:12:52] 2025-11-22 20:11:50,755 | INFO     | sum of square deviations: 38528164250.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,758 | INFO     | sum of deviations: 333873571091.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,758 | INFO     | mean x: 1763826761.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,758 | INFO     | mean y: 2237750.346693387
[2025-11-22 15:12:52] 2025-11-22 20:11:50,758 | INFO     | intersect: -15282558474.558878
[2025-11-22 15:12:52] 2025-11-22 20:11:50,758 | INFO     | chi2: 4.210207054630657
[2025-11-22 15:12:52] 2025-11-22 20:11:50,759 | INFO     | current chi2=4.210207054630657 (change=39.83464470773855 %)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,759 | INFO     | sum of square deviations: 37381566007.5
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | sum of deviations: 367567724888.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | mean x: 1763826608.5
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | mean y: 2242192.5101214573
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | intersect: -17341218845.296215
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | chi2: 3.323468543194516
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | current chi2=3.323468543194516 (change=21.061636635206543 %)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,763 | INFO     | right removable region: 493
[2025-11-22 15:12:52] 2025-11-22 20:11:50,764 | INFO     | sum of square deviations: 38528164250.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,767 | INFO     | sum of deviations: 79809805548.00002
[2025-11-22 15:12:52] 2025-11-22 20:11:50,767 | INFO     | mean x: 1763827066.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,767 | INFO     | mean y: 2238603.789579158
[2025-11-22 15:12:52] 2025-11-22 20:11:50,767 | INFO     | intersect: -3651470258.2348914
[2025-11-22 15:12:52] 2025-11-22 20:11:50,768 | INFO     | chi2: 4.046807042628554
[2025-11-22 15:12:52] 2025-11-22 20:11:50,768 | INFO     | current chi2=4.046807042628554 (change=42.16968895836596 %)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,768 | INFO     | sum of square deviations: 37381566007.5
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | sum of deviations: 47576694867.50003
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | mean x: 1763827218.5
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | mean y: 2242875.710526316
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | intersect: -2242635505.16654
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | chi2: 3.7921869148201313
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | current chi2=3.7921869148201313 (change=6.291877154662597 %)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | left removable region: 20
[2025-11-22 15:12:52] 2025-11-22 20:11:50,772 | INFO     | sum of square deviations: 32814055252.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,776 | INFO     | sum of deviations: 178114073667.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,776 | INFO     | mean x: 1763827188.0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,776 | INFO     | mean y: 2267853.6638477803
[2025-11-22 15:12:52] 2025-11-22 20:11:50,776 | INFO     | intersect: -9571752891.00292
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | chi2: 0.03712662856049927
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | current memory leak: 5.43 B/s (using 473 data points, chi2=0.04)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | could have reported an average CPU frequency of 2333 MHz (20 samples)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | ..............................
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . Timing measurements:
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . get job = 0 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . initial setup = 3 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . payload setup = 8 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . stage-in = 0 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,777 | INFO     | . payload execution = 30721 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,778 | INFO     | . stage-out = 5 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,778 | INFO     | . log creation = 0 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,778 | INFO     | ..............................
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | 
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | job summary report
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | --------------------------------------------------
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | PanDA job id: 6895323772
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | task id: 47556137
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | errors: (none)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:12:52] 2025-11-22 20:11:50,823 | INFO     | pilot state: finished 
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | transexitcode: 0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | exeerrorcode: 0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | exeerrordiag: 
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | exitcode: 0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | exitmsg: OK
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | cpuconsumptiontime: 120543 s
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | nevents: 1000
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | neventsw: 0
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | pid: 511620
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | pgrp: 511620
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | corecount: 4
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | event service: False
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | sizes: {0: 2298763, 4: 2299025, 11: 2299053, 30733: 2338122, 30739: 2347202, 30751: 2347392}
[2025-11-22 15:12:52] 2025-11-22 20:11:50,824 | INFO     | --------------------------------------------------
[2025-11-22 15:12:52] 2025-11-22 20:11:50,825 | INFO     | 
[2025-11-22 15:12:52] 2025-11-22 20:11:50,825 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/14
[2025-11-22 15:12:52] 2025-11-22 20:11:50,841 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,843 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:12:52] 2025-11-22 20:11:50,843 | INFO     | job 6895323772 has completed (purged errors)
[2025-11-22 15:12:52] 2025-11-22 20:11:50,843 | INFO     | overall cleanup function is called
[2025-11-22 15:12:52] 2025-11-22 20:11:51,855 | INFO     | --- collectZombieJob: --- 10, [511620]
[2025-11-22 15:12:52] 2025-11-22 20:11:51,855 | INFO     | zombie collector waiting for pid 511620
[2025-11-22 15:12:52] 2025-11-22 20:11:51,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:12:52] 2025-11-22 20:11:51,855 | INFO     | collected zombie processes
[2025-11-22 15:12:52] 2025-11-22 20:11:51,855 | INFO     | will attempt to kill all subprocesses of pid=511620
[2025-11-22 15:12:52] 2025-11-22 20:11:52,169 | INFO     | process IDs to be killed: [511620] (in reverse order)
[2025-11-22 15:12:52] 2025-11-22 20:11:52,253 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:12:52] 2025-11-22 20:11:52,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:12:52] 2025-11-22 20:11:52,264 | INFO     | did not find any defunct processes belonging to 511620
[2025-11-22 15:12:52] 2025-11-22 20:11:52,274 | INFO     | did not find any defunct processes belonging to 511620
[2025-11-22 15:12:52] 2025-11-22 20:11:52,275 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:12:52] 2025-11-22 20:11:52,276 | INFO     | ready for new job
[2025-11-22 15:12:52] 2025-11-22 20:11:52,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:12:52] 2025-11-22 20:11:52,278 | INFO     | ***************************************
[2025-11-22 15:12:52] 2025-11-22 20:11:52,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:12:52] 2025-11-22 20:11:52,278 | INFO     | ***************************************
[2025-11-22 15:12:52] 2025-11-22 20:11:52,278 | INFO     | 
[2025-11-22 15:12:52] 2025-11-22 20:11:52,285 | INFO     | architecture information:
[2025-11-22 15:12:52] 2025-11-22 20:11:52,285 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:12:52] 2025-11-22 20:11:52,298 | INFO     | cat /etc/os-release:
[2025-11-22 15:12:52] NAME="CentOS Linux"
[2025-11-22 15:12:52] VERSION="7 (Core)"
[2025-11-22 15:12:52] ID="centos"
[2025-11-22 15:12:52] ID_LIKE="rhel fedora"
[2025-11-22 15:12:52] VERSION_ID="7"
[2025-11-22 15:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:12:52] ANSI_COLOR="0;31"
[2025-11-22 15:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:12:52] HOME_URL="https://www.centos.org/"
[2025-11-22 15:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:12:52] 
[2025-11-22 15:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:12:52] 
[2025-11-22 15:12:52] 2025-11-22 20:11:52,298 | INFO     | ***************************************
[2025-11-22 15:12:52] 2025-11-22 20:11:52,801 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/14
[2025-11-22 15:12:52] 2025-11-22 20:11:52,814 | INFO     | sufficient remaining disk space (373036154880 B)
[2025-11-22 15:12:52] 2025-11-22 20:11:52,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:12:52] 2025-11-22 20:11:52,814 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:12:52] 2025-11-22 20:11:52,814 | INFO     | update_server=False
[2025-11-22 15:12:52] 2025-11-22 20:11:52,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:12:52] 2025-11-22 20:11:52,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:12:52] 2025-11-22 20:11:52,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:12:52] 2025-11-22 20:11:52,815 | INFO     | aborting loop
[2025-11-22 15:12:52] 2025-11-22 20:11:53,212 | INFO     | all payload control threads have been joined
[2025-11-22 15:12:52] 2025-11-22 20:11:53,376 | INFO     | all data control threads have been joined
[2025-11-22 15:12:52] 2025-11-22 20:11:53,819 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:53,820 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:53,821 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:53,941 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,000 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,031 | INFO     | all job control threads have been joined
[2025-11-22 15:12:52] 2025-11-22 20:11:54,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:12:52] 2025-11-22 20:11:54,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:12:52] 2025-11-22 20:11:54,218 | INFO     | [payload] control thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,382 | INFO     | [data] control thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,525 | INFO     | [job] validate thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,545 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,631 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:54,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:55,006 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:55,036 | INFO     | [job] control thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:56,088 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:11:58,078 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:12:03,760 | INFO     | job.realtimelogging is not enabled
[2025-11-22 15:12:52] 2025-11-22 20:12:04,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:12:52] 2025-11-22 20:12:23,642 | INFO     | PID=494473 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 15:12:52] 2025-11-22 20:12:23,642 | INFO     | .. there are 7 such processes running
[2025-11-22 15:12:52] 2025-11-22 20:12:23,642 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:12:52] 2025-11-22 20:12:23,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:12:52] 2025-11-22 20:12:23,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:12:52] 2025-11-22 20:12:46,978 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:12:52] 2025-11-22 20:12:47,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138415479879488)>', '<ExcThread(monitor, started 138415198668544)>']
[2025-11-22 15:12:52] 2025-11-22 20:12:47,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:12:52] 2025-11-22 20:12:47,765 | INFO     | [monitor] control thread has ended
[2025-11-22 15:12:52] 2025-11-22 20:12:52,603 | INFO     | all workflow threads have been joined
[2025-11-22 15:12:52] 2025-11-22 20:12:52,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:12:52] 2025-11-22 20:12:52,604 | INFO     | traces error code: 0
[2025-11-22 15:12:52] 2025-11-22 20:12:52,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:12:52] 2025-11-22 20:12:52,663 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:12:52] 2025-11-22 20:12:52,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:12:52] 2025-11-22 20:12:52,669 [wrapper] pilotpid: 494473
[2025-11-22 15:12:52] 2025-11-22 20:12:52,671 [wrapper] Pilot exit status: 0
[2025-11-22 15:12:52] 2025-11-22 20:12:52,680 [wrapper] pandaids: 6895323772
[2025-11-22 15:12:52] 2025-11-22 20:12:52,742 [wrapper] cleanup supervisor_pilot 1265514 494474
[2025-11-22 15:12:52] 2025-11-22 20:12:52,745 [wrapper] Test setup, not cleaning
[2025-11-22 15:12:52] 2025-11-22 20:12:52,747 [wrapper] apfmon messages muted
[2025-11-22 15:12:52] 2025-11-22 20:12:52,750 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:12:52] 2025-11-22 20:12:52,752 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:12:52]  *** Error codes and diagnostics ***
[2025-11-22 15:12:52]     "exeErrorCode": 0,
[2025-11-22 15:12:52]     "exeErrorDiag": "",
[2025-11-22 15:12:52]     "pilotErrorCode": 0,
[2025-11-22 15:12:52]     "pilotErrorDiag": "",
[2025-11-22 15:12:52]  *** Listing of results directory ***
[2025-11-22 15:12:52] total 1324596
[2025-11-22 15:12:52] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-22 15:12:52] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 08:56 queuedata.json
[2025-11-22 15:12:52] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 08:59 runpilot2-wrapper.sh
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:12:52] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 06:38 run_atlas
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 06:38 job.xml
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd 410252996 Nov 22 06:38 EVNT.47483658._000010.pool.root.1
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:38 start_atlas.sh
[2025-11-22 15:12:52] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 06:38 shared
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd    590100 Nov 22 06:38 input.tar.gz
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd      9474 Nov 22 06:38 init_data.xml
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:38 boinc_setup_complete
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 06:38 boinc_lockfile
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd      2781 Nov 22 06:38 pandaJob.out
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd    989768 Nov 22 06:39 agis_schedconf.cvmfs.json
[2025-11-22 15:12:52] drwx------ 5 whitlerd whitlerd      4096 Nov 22 06:39 pilot3
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 22 15:04 boinc_task_state.xml
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd 930794824 Nov 22 15:11 HITS.47556137._000095.pool.root.1
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd      1044 Nov 22 15:11 memory_monitor_summary.json
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd        95 Nov 22 15:11 pilot_heartbeat.json
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd   1526164 Nov 22 15:11 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd   1337921 Nov 22 15:11 log.47556137._000095.job.log.tgz.1
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd      8578 Nov 22 15:11 heartbeat.json
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 22 15:12 wrapper_checkpoint.txt
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 22 15:12 boinc_mmap_file
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd      4910 Nov 22 15:12 pilotlog.txt
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd   4368371 Nov 22 15:12 log.47556137._000095.job.log.1
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd       353 Nov 22 15:12 output.list
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 22 15:12 runtime_log
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd   5724160 Nov 22 15:12 result.tar.gz
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 22 15:12 runtime_log.err
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd       661 Nov 22 15:12 kyKMDmDrgg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2dHKDmOAdxXn.diag
[2025-11-22 15:12:52] -rw-rw-r-- 1 whitlerd whitlerd     21287 Nov 22 15:12 stderr.txt
[2025-11-22 15:12:52] HITS file was successfully produced:
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd 930794824 Nov 22 15:11 shared/HITS.pool.root.1
[2025-11-22 15:12:52]  *** Contents of shared directory: ***
[2025-11-22 15:12:52] total 1315816
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd 410252996 Nov 22 06:38 ATLAS.root_0
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 06:38 start_atlas.sh
[2025-11-22 15:12:52] -rw-r--r-- 2 whitlerd whitlerd    590100 Nov 22 06:38 input.tar.gz
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd 930794824 Nov 22 15:11 HITS.pool.root.1
[2025-11-22 15:12:52] -rw------- 1 whitlerd whitlerd   5724160 Nov 22 15:12 result.tar.gz
15:12:54 (489628): run_atlas exited; CPU time 121291.403656
15:12:54 (489628): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN