Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:02:00 (30389): wrapper (7.7.26015): starting
02:02:00 (30389): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:02:00] Arguments: --nthreads 8
[2025-11-25 02:02:00] Threads: 8
[2025-11-25 02:02:00] Checking for CVMFS
[2025-11-25 02:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:02:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:02:00] 2.11.2.0 9405 209231 133912 153264 0 143 24071924 25165825 395 130560 10 90208423 99.882 44497130 2222 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:02:00] CVMFS is ok
[2025-11-25 02:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:02:00] Checking for apptainer binary...
[2025-11-25 02:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:02:00] Running /usr/bin/apptainer --version
[2025-11-25 02:02:00] apptainer version 1.3.2-1.el7
[2025-11-25 02:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:02:02] cg-vwn431.simple-grid.lan
[2025-11-25 02:02:02] apptainer works
[2025-11-25 02:02:02] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:02:02] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:02:02] Starting ATLAS job with PandaID=6895323763
[2025-11-25 02:02:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:23:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:23:05] 2025-11-26 01:21:54,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:23:05] 2025-11-26 01:21:54,306 | INFO     | time since job start (87572s) is within the limit (172800.0s)
[2025-11-26 02:23:05] 2025-11-26 01:21:56,313 | INFO     | time since job start (87574s) is within the limit (172800.0s)
[2025-11-26 02:23:05] 2025-11-26 01:21:56,792 | INFO     | monitor loop #5825: job 0:6895323763 is in state 'finished'
[2025-11-26 02:23:05] 2025-11-26 01:21:56,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:23:05] 2025-11-26 01:21:58,320 | INFO     | time since job start (87576s) is within the limit (172800.0s)
[2025-11-26 02:23:05] 2025-11-26 01:21:59,297 | INFO     | monitor loop #5826: job 0:6895323763 is in state 'finished'
[2025-11-26 02:23:05] 2025-11-26 01:21:59,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:23:05] 2025-11-26 01:21:59,549 | INFO     | PID=1704 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 02:23:05] 2025-11-26 01:21:59,550 | INFO     | .. there are 9 such processes running
[2025-11-26 02:23:05] 2025-11-26 01:22:00,551 | INFO     | time since job start (87578s) is within the limit (172800.0s)
[2025-11-26 02:23:05] 2025-11-26 01:22:01,802 | INFO     | monitor loop #5827: job 0:6895323763 is in state 'finished'
[2025-11-26 02:23:05] 2025-11-26 01:22:01,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:23:05] 2025-11-26 01:22:02,561 | INFO     | time since job start (87580s) is within the limit (172800.0s)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,031 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:23:05] 2025-11-26 01:22:03,032 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:23:05] 2025-11-26 01:22:03,034 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6895323763/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,034 | INFO     | extracted standard info from prmon json
[2025-11-26 02:23:05] 2025-11-26 01:22:03,035 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:23:05] 2025-11-26 01:22:03,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:23:05] 2025-11-26 01:22:03,061 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:23:05] 2025-11-26 01:22:03,064 | INFO     | sum of square deviations: 914380412017.0265
[2025-11-26 02:23:05] 2025-11-26 01:22:03,125 | INFO     | sum of deviations: 2328455740233.7466
[2025-11-26 02:23:05] 2025-11-26 01:22:03,126 | INFO     | mean x: 1764076291.8096235
[2025-11-26 02:23:05] 2025-11-26 01:22:03,126 | INFO     | mean y: 2871846.771966527
[2025-11-26 02:23:05] 2025-11-26 01:22:03,126 | INFO     | intersect: -4489321461.277477
[2025-11-26 02:23:05] 2025-11-26 01:22:03,128 | INFO     | chi2: 12.73289443983228
[2025-11-26 02:23:05] 2025-11-26 01:22:03,130 | INFO     | sum of square deviations: 904849671205.9214
[2025-11-26 02:23:05] 2025-11-26 01:22:03,187 | INFO     | sum of deviations: 2807044377755.9937
[2025-11-26 02:23:05] 2025-11-26 01:22:03,188 | INFO     | mean x: 1764076139.3142056
[2025-11-26 02:23:05] 2025-11-26 01:22:03,188 | INFO     | mean y: 2879503.158152554
[2025-11-26 02:23:05] 2025-11-26 01:22:03,188 | INFO     | intersect: -5469675957.016761
[2025-11-26 02:23:05] 2025-11-26 01:22:03,190 | INFO     | chi2: 9.551100274162785
[2025-11-26 02:23:05] 2025-11-26 01:22:03,190 | INFO     | current chi2=9.551100274162785 (change=24.988773610781674 %)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,190 | INFO     | right removable region: 1428
[2025-11-26 02:23:05] 2025-11-26 01:22:03,192 | INFO     | sum of square deviations: 904848525625.921
[2025-11-26 02:23:05] 2025-11-26 01:22:03,247 | INFO     | sum of deviations: 1895993185755.063
[2025-11-26 02:23:05] 2025-11-26 01:22:03,247 | INFO     | mean x: 1764076444.3142056
[2025-11-26 02:23:05] 2025-11-26 01:22:03,247 | INFO     | mean y: 2878762.5388383484
[2025-11-26 02:23:05] 2025-11-26 01:22:03,247 | INFO     | intersect: -3693515520.976299
[2025-11-26 02:23:05] 2025-11-26 01:22:03,249 | INFO     | chi2: 10.335104900818274
[2025-11-26 02:23:05] 2025-11-26 01:22:03,249 | INFO     | current chi2=10.335104900818274 (change=18.831456982106186 %)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,249 | INFO     | left removable region: 10
[2025-11-26 02:23:05] 2025-11-26 01:22:03,251 | INFO     | sum of square deviations: 884113384409.276
[2025-11-26 02:23:05] 2025-11-26 01:22:03,319 | INFO     | sum of deviations: 2388455855683.7104
[2025-11-26 02:23:05] 2025-11-26 01:22:03,320 | INFO     | mean x: 1764076413.8244007
[2025-11-26 02:23:05] 2025-11-26 01:22:03,320 | INFO     | mean y: 2889559.1354019744
[2025-11-26 02:23:05] 2025-11-26 01:22:03,320 | INFO     | intersect: -4762809857.673702
[2025-11-26 02:23:05] 2025-11-26 01:22:03,322 | INFO     | chi2: 6.381949744453971
[2025-11-26 02:23:05] 2025-11-26 01:22:03,322 | INFO     | current memory leak: 2.70 B/s (using 1418 data points, chi2=6.38)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,324 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,324 | INFO     | ..............................
[2025-11-26 02:23:05] 2025-11-26 01:22:03,324 | INFO     | . Timing measurements:
[2025-11-26 02:23:05] 2025-11-26 01:22:03,324 | INFO     | . get job = 0 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . initial setup = 2 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . payload setup = 11 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . stage-in = 0 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . payload execution = 87436 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . stage-out = 6 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | . log creation = 2 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,325 | INFO     | ..............................
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | 
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | job summary report
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | --------------------------------------------------
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | PanDA job id: 6895323763
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | task id: 47556137
[2025-11-26 02:23:05] 2025-11-26 01:22:03,440 | INFO     | errors: (none)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | pilot state: finished 
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | transexitcode: 0
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | exeerrorcode: 0
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | exeerrordiag: 
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | exitcode: 0
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | exitmsg: OK
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | cpuconsumptiontime: 337421 s
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | nevents: 1000
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | neventsw: 0
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | pid: 8175
[2025-11-26 02:23:05] 2025-11-26 01:22:03,441 | INFO     | pgrp: 8175
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | corecount: 8
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | event service: False
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | sizes: {0: 2284302, 1: 2284330, 8: 2284592, 12: 2284620, 87451: 2347321, 87452: 2347320, 87459: 2356505, 87460: 2356561, 87562: 2356807}
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | --------------------------------------------------
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | 
[2025-11-26 02:23:05] 2025-11-26 01:22:03,442 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-26 02:23:05] 2025-11-26 01:22:03,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | job 6895323763 has completed (purged errors)
[2025-11-26 02:23:05] 2025-11-26 01:22:03,927 | INFO     | overall cleanup function is called
[2025-11-26 02:23:05] 2025-11-26 01:22:04,947 | INFO     | --- collectZombieJob: --- 10, [8175]
[2025-11-26 02:23:05] 2025-11-26 01:22:04,947 | INFO     | zombie collector waiting for pid 8175
[2025-11-26 02:23:05] 2025-11-26 01:22:04,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:23:05] 2025-11-26 01:22:04,947 | INFO     | collected zombie processes
[2025-11-26 02:23:05] 2025-11-26 01:22:04,947 | INFO     | will attempt to kill all subprocesses of pid=8175
[2025-11-26 02:23:05] 2025-11-26 01:22:05,054 | INFO     | process IDs to be killed: [8175] (in reverse order)
[2025-11-26 02:23:05] 2025-11-26 01:22:05,384 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:23:05] 2025-11-26 01:22:05,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:23:05] 2025-11-26 01:22:05,388 | INFO     | did not find any defunct processes belonging to 8175
[2025-11-26 02:23:05] 2025-11-26 01:22:05,390 | INFO     | did not find any defunct processes belonging to 8175
[2025-11-26 02:23:05] 2025-11-26 01:22:05,444 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:23:05] 2025-11-26 01:22:05,444 | INFO     | ready for new job
[2025-11-26 02:23:05] 2025-11-26 01:22:05,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:23:05] 2025-11-26 01:22:05,450 | INFO     | ***************************************
[2025-11-26 02:23:05] 2025-11-26 01:22:05,450 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:23:05] 2025-11-26 01:22:05,451 | INFO     | ***************************************
[2025-11-26 02:23:05] 2025-11-26 01:22:05,451 | INFO     | 
[2025-11-26 02:23:05] 2025-11-26 01:22:05,451 | INFO     | pilot is running in a VM
[2025-11-26 02:23:05] 2025-11-26 01:22:05,451 | INFO     | architecture information:
[2025-11-26 02:23:05] 2025-11-26 01:22:05,457 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:23:05] 2025-11-26 01:22:05,615 | INFO     | cat /etc/os-release:
[2025-11-26 02:23:05] NAME="CentOS Linux"
[2025-11-26 02:23:05] VERSION="7 (Core)"
[2025-11-26 02:23:05] ID="centos"
[2025-11-26 02:23:05] ID_LIKE="rhel fedora"
[2025-11-26 02:23:05] VERSION_ID="7"
[2025-11-26 02:23:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:23:05] ANSI_COLOR="0;31"
[2025-11-26 02:23:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:23:05] HOME_URL="https://www.centos.org/"
[2025-11-26 02:23:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:23:05] 
[2025-11-26 02:23:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:23:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:23:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:23:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:23:05] 
[2025-11-26 02:23:05] 2025-11-26 01:22:05,615 | INFO     | ***************************************
[2025-11-26 02:23:05] 2025-11-26 01:22:06,119 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-26 02:23:05] 2025-11-26 01:22:06,322 | INFO     | sufficient remaining disk space (495870541824 B)
[2025-11-26 02:23:05] 2025-11-26 01:22:06,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:23:05] 2025-11-26 01:22:06,322 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:23:05] 2025-11-26 01:22:06,322 | INFO     | update_server=False
[2025-11-26 02:23:05] 2025-11-26 01:22:06,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:23:05] 2025-11-26 01:22:06,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:23:05] 2025-11-26 01:22:06,371 | INFO     | all job control threads have been joined
[2025-11-26 02:23:05] 2025-11-26 01:22:06,816 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:23:05] 2025-11-26 01:22:06,816 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:23:05] 2025-11-26 01:22:06,816 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:23:05] 2025-11-26 01:22:06,816 | INFO     | will abort loop
[2025-11-26 02:23:05] 2025-11-26 01:22:06,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:23:05] 2025-11-26 01:22:07,167 | INFO     | all data control threads have been joined
[2025-11-26 02:23:05] 2025-11-26 01:22:07,328 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,377 | INFO     | [job] control thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,519 | INFO     | [job] validate thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,671 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,757 | INFO     | all payload control threads have been joined
[2025-11-26 02:23:05] 2025-11-26 01:22:07,812 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,822 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:07,903 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,160 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,173 | INFO     | [data] control thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,353 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:23:05] 2025-11-26 01:22:08,529 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:08,763 | INFO     | [payload] control thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:09,461 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:10,827 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:23:05] 2025-11-26 01:22:35,744 | INFO     | PID=1704 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 02:23:05] 2025-11-26 01:22:35,744 | INFO     | .. there are 9 such processes running
[2025-11-26 02:23:05] 2025-11-26 01:22:35,745 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:23:05] 2025-11-26 01:22:35,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:23:05] 2025-11-26 01:22:35,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:23:05] 2025-11-26 01:22:55,147 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:23:05] 2025-11-26 01:22:57,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547094648640)>', '<ExcThread(monitor, started 140546345522944)>']
[2025-11-26 02:23:05] 2025-11-26 01:22:57,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:23:05] 2025-11-26 01:22:57,877 | INFO     | [monitor] control thread has ended
[2025-11-26 02:23:05] 2025-11-26 01:23:02,221 | INFO     | all workflow threads have been joined
[2025-11-26 02:23:05] 2025-11-26 01:23:02,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:23:05] 2025-11-26 01:23:02,221 | INFO     | traces error code: 0
[2025-11-26 02:23:05] 2025-11-26 01:23:02,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:23:05] 2025-11-26 01:23:02,395 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:23:05] 2025-11-26 01:23:02,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:23:05] 2025-11-26 01:23:02,440 [wrapper] pilotpid: 1704
[2025-11-26 02:23:05] 2025-11-26 01:23:02,443 [wrapper] Pilot exit status: 0
[2025-11-26 02:23:05] 2025-11-26 01:23:02,469 [wrapper] pandaids: 6895323763
[2025-11-26 02:23:05] 2025-11-26 01:23:02,509 [wrapper] cleanup supervisor_pilot  5529 1705
[2025-11-26 02:23:05] 2025-11-26 01:23:02,633 [wrapper] Test setup, not cleaning
[2025-11-26 02:23:05] 2025-11-26 01:23:02,740 [wrapper] apfmon messages muted
[2025-11-26 02:23:05] 2025-11-26 01:23:02,854 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:23:05] 2025-11-26 01:23:03,017 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:23:05]  *** Error codes and diagnostics ***
[2025-11-26 02:23:05]     "exeErrorCode": 0,
[2025-11-26 02:23:05]     "exeErrorDiag": "",
[2025-11-26 02:23:05]     "pilotErrorCode": 0,
[2025-11-26 02:23:05]     "pilotErrorDiag": "",
[2025-11-26 02:23:05]  *** Listing of results directory ***
[2025-11-26 02:23:05] total 1323660
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc      5112 Nov 21 14:51 queuedata.json
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-26 02:23:05] -rwx------. 1 boinc boinc     36292 Nov 21 14:52 runpilot2-wrapper.sh
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:23:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:01 run_atlas
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:01 job.xml
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc 410799083 Nov 25 02:02 EVNT.47483658._000009.pool.root.1
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:02 start_atlas.sh
[2025-11-26 02:23:05] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:02 shared
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc    590093 Nov 25 02:02 input.tar.gz
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc      6394 Nov 25 02:02 init_data.xml
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:02 boinc_lockfile
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc      2781 Nov 25 02:02 pandaJob.out
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc    991801 Nov 25 02:02 agis_schedconf.cvmfs.json
[2025-11-26 02:23:05] drwx------. 5 boinc boinc      4096 Nov 25 02:02 pilot3
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:58 boinc_task_state.xml
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc 912438027 Nov 26 02:18 HITS.47556137._000086.pool.root.1
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc      1034 Nov 26 02:20 memory_monitor_summary.json
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc   1516240 Nov 26 02:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc   2495066 Nov 26 02:20 log.47556137._000086.job.log.tgz.1
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc      8617 Nov 26 02:22 heartbeat.json
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc        95 Nov 26 02:22 pilot_heartbeat.json
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:23 boinc_mmap_file
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc      5070 Nov 26 02:23 pilotlog.txt
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:23 wrapper_checkpoint.txt
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc  11642354 Nov 26 02:23 log.47556137._000086.job.log.1
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc       353 Nov 26 02:23 output.list
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:23 runtime_log
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc  14161920 Nov 26 02:23 result.tar.gz
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc      8833 Nov 26 02:23 runtime_log.err
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc       662 Nov 26 02:23 6hrKDm5jgg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdSJKDm0hL9xn.diag
[2025-11-26 02:23:05] -rw-r--r--. 1 boinc boinc     21456 Nov 26 02:23 stderr.txt
[2025-11-26 02:23:05] HITS file was successfully produced:
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc 912438027 Nov 26 02:18 shared/HITS.pool.root.1
[2025-11-26 02:23:05]  *** Contents of shared directory: ***
[2025-11-26 02:23:05] total 1306656
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc 410799083 Nov 25 02:02 ATLAS.root_0
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:02 start_atlas.sh
[2025-11-26 02:23:05] -rw-r--r--. 2 boinc boinc    590093 Nov 25 02:02 input.tar.gz
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc 912438027 Nov 26 02:18 HITS.pool.root.1
[2025-11-26 02:23:05] -rw-------. 1 boinc boinc  14161920 Nov 26 02:23 result.tar.gz
02:23:07 (30389): run_atlas exited; CPU time 337832.405599
02:23:07 (30389): called boinc_finish(0)

</stderr_txt>
]]>

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