Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:47:54 (2093977): wrapper (7.7.26015): starting
06:47:54 (2093977): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 06:47:54] Arguments: --nthreads 8
[2025-11-22 06:47:54] Threads: 8
[2025-11-22 06:47:54] Checking for CVMFS
[2025-11-22 06:47:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:47:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:47:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:47:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:47:54] 2.13.2.0 7533 25760 239964 153170 3 126 38621432 39288833 6127 16776704 0 14988543 99.663 13687299 32895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 06:47:54] CVMFS is ok
[2025-11-22 06:47:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:47:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 06:47:54] Further information can be found at the LHC@home message board.
[2025-11-22 06:47:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:47:54] Checking for apptainer binary...
[2025-11-22 06:47:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:47:54] Running /usr/bin/apptainer --version
[2025-11-22 06:47:54] apptainer version 1.4.4-1.el9
[2025-11-22 06:47:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:47:55] c-211-31.aglt2.org
[2025-11-22 06:47:55] apptainer works
[2025-11-22 06:47:55] Set ATHENA_PROC_NUMBER=8
[2025-11-22 06:47:55] Set ATHENA_CORE_NUMBER=8
[2025-11-22 06:47:55] Starting ATLAS job with PandaID=6894269229
[2025-11-22 06:47:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:09:23]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:09:23] 2025-11-24 05:08:26,401 | INFO     | PID=2097659 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 00:09:23] 2025-11-24 05:08:26,401 | INFO     | .. there are 9 such processes running
[2025-11-24 00:09:23] 2025-11-24 05:08:27,405 | INFO     | time since job start (148811s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:28,870 | INFO     | monitor loop #8822: job 0:6894269229 is in state 'finished'
[2025-11-24 00:09:23] 2025-11-24 05:08:28,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:09:23] 2025-11-24 05:08:29,416 | INFO     | time since job start (148813s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:31,376 | INFO     | monitor loop #8823: job 0:6894269229 is in state 'finished'
[2025-11-24 00:09:23] 2025-11-24 05:08:31,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:09:23] 2025-11-24 05:08:31,432 | INFO     | time since job start (148815s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:33,441 | INFO     | time since job start (148817s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:33,881 | INFO     | monitor loop #8824: job 0:6894269229 is in state 'finished'
[2025-11-24 00:09:23] 2025-11-24 05:08:33,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:09:23] 2025-11-24 05:08:35,449 | INFO     | time since job start (148819s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:35,905 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 00:09:23] 2025-11-24 05:08:35,919 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.985125
[2025-11-24 00:09:23] 2025-11-24 05:08:35,939 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894269229/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:09:23] 2025-11-24 05:08:35,940 | INFO     | extracted standard info from prmon json
[2025-11-24 00:09:23] 2025-11-24 05:08:35,940 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:09:23] 2025-11-24 05:08:35,940 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:09:23] 2025-11-24 05:08:36,030 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:09:23] 2025-11-24 05:08:36,034 | INFO     | sum of square deviations: 4493877622150.47
[2025-11-24 00:09:23] 2025-11-24 05:08:36,354 | INFO     | sum of deviations: 4249982637350.3604
[2025-11-24 00:09:23] 2025-11-24 05:08:36,354 | INFO     | mean x: 1763886468.402789
[2025-11-24 00:09:23] 2025-11-24 05:08:36,355 | INFO     | mean y: 3046768.0902379
[2025-11-24 00:09:23] 2025-11-24 05:08:36,355 | INFO     | intersect: -1665108774.9131296
[2025-11-24 00:09:23] 2025-11-24 05:08:36,362 | INFO     | chi2: 29.594287624429338
[2025-11-24 00:09:23] 2025-11-24 05:08:36,365 | INFO     | sum of square deviations: 4466290584215.288
[2025-11-24 00:09:23] 2025-11-24 05:08:36,397 | INFO     | monitor loop #8825: job 0:6894269229 is in state 'finished'
[2025-11-24 00:09:23] 2025-11-24 05:08:36,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:09:23] 2025-11-24 05:08:36,930 | INFO     | sum of deviations: 5211768619247.237
[2025-11-24 00:09:23] 2025-11-24 05:08:36,931 | INFO     | mean x: 1763886315.9099877
[2025-11-24 00:09:23] 2025-11-24 05:08:36,931 | INFO     | mean y: 3052083.84134813
[2025-11-24 00:09:23] 2025-11-24 05:08:36,931 | INFO     | intersect: -2055248238.5042176
[2025-11-24 00:09:23] 2025-11-24 05:08:36,934 | INFO     | chi2: 25.61529263904458
[2025-11-24 00:09:23] 2025-11-24 05:08:36,942 | INFO     | current chi2=25.61529263904458 (change=13.445145346564107 %)
[2025-11-24 00:09:23] 2025-11-24 05:08:36,942 | INFO     | right removable region: 2432
[2025-11-24 00:09:23] 2025-11-24 05:08:36,955 | INFO     | sum of square deviations: 4466285077121.653
[2025-11-24 00:09:23] 2025-11-24 05:08:37,485 | INFO     | time since job start (148821s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:37,520 | INFO     | sum of deviations: 3358558936975.151
[2025-11-24 00:09:23] 2025-11-24 05:08:37,521 | INFO     | mean x: 1763886620.9108098
[2025-11-24 00:09:23] 2025-11-24 05:08:37,521 | INFO     | mean y: 3051694.1389231402
[2025-11-24 00:09:23] 2025-11-24 05:08:37,521 | INFO     | intersect: -1323356511.377766
[2025-11-24 00:09:23] 2025-11-24 05:08:37,524 | INFO     | chi2: 26.51699550932225
[2025-11-24 00:09:23] 2025-11-24 05:08:37,524 | INFO     | current chi2=26.51699550932225 (change=10.398263861458389 %)
[2025-11-24 00:09:23] 2025-11-24 05:08:37,524 | INFO     | left removable region: 10
[2025-11-24 00:09:23] 2025-11-24 05:08:37,537 | INFO     | sum of square deviations: 4405986456230.5625
[2025-11-24 00:09:23] 2025-11-24 05:08:38,051 | INFO     | sum of deviations: 4190557176807.401
[2025-11-24 00:09:23] 2025-11-24 05:08:38,051 | INFO     | mean x: 1763886590.42692
[2025-11-24 00:09:23] 2025-11-24 05:08:38,062 | INFO     | mean y: 3059538.0644095787
[2025-11-24 00:09:23] 2025-11-24 05:08:38,062 | INFO     | intersect: -1674582389.3489654
[2025-11-24 00:09:23] 2025-11-24 05:08:38,066 | INFO     | chi2: 21.623747955918002
[2025-11-24 00:09:23] 2025-11-24 05:08:38,066 | INFO     | current memory leak: 0.95 B/s (using 2422 data points, chi2=21.62)
[2025-11-24 00:09:23] 2025-11-24 05:08:38,078 | INFO     | could have reported an average CPU frequency of 2899 MHz (84 samples)
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | ..............................
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | . Timing measurements:
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | . get job = 0 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | . initial setup = 3 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | . payload setup = 11 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,079 | INFO     | . stage-in = 0 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,080 | INFO     | . payload execution = 148716 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,080 | INFO     | . stage-out = 10 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,080 | INFO     | . log creation = 2 s
[2025-11-24 00:09:23] 2025-11-24 05:08:38,080 | INFO     | ..............................
[2025-11-24 00:09:23] 2025-11-24 05:08:39,603 | INFO     | time since job start (148823s) is within the limit (172800.0s)
[2025-11-24 00:09:23] 2025-11-24 05:08:40,137 | INFO     | 
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | job summary report
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | --------------------------------------------------
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | PanDA job id: 6894269229
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | task id: 47533967
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | errors: (none)
[2025-11-24 00:09:23] 2025-11-24 05:08:40,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | pilot state: finished 
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | transexitcode: 0
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | exeerrorcode: 0
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | exeerrordiag: 
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | exitcode: 0
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | exitmsg: OK
[2025-11-24 00:09:23] 2025-11-24 05:08:40,139 | INFO     | cpuconsumptiontime: 486552 s
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | nevents: 1000
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | neventsw: 0
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | pid: 2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | pgrp: 2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | corecount: 8
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | event service: False
[2025-11-24 00:09:23] 2025-11-24 05:08:40,140 | INFO     | sizes: {0: 2298636, 1: 2298835, 9: 2299097, 12: 2299125, 148729: 2389588, 148731: 2389587, 148742: 2400617, 148745: 2400673, 148804: 2400919}
[2025-11-24 00:09:23] 2025-11-24 05:08:40,145 | INFO     | --------------------------------------------------
[2025-11-24 00:09:23] 2025-11-24 05:08:40,145 | INFO     | 
[2025-11-24 00:09:23] 2025-11-24 05:08:40,145 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 00:09:23] 2025-11-24 05:08:40,256 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:09:23] 2025-11-24 05:08:40,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:09:23] 2025-11-24 05:08:40,264 | INFO     | job 6894269229 has completed (purged errors)
[2025-11-24 00:09:23] 2025-11-24 05:08:40,265 | INFO     | overall cleanup function is called
[2025-11-24 00:09:23] 2025-11-24 05:08:41,295 | INFO     | --- collectZombieJob: --- 10, [2104833]
[2025-11-24 00:09:23] 2025-11-24 05:08:41,295 | INFO     | zombie collector waiting for pid 2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:41,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:09:23] 2025-11-24 05:08:41,295 | INFO     | collected zombie processes
[2025-11-24 00:09:23] 2025-11-24 05:08:41,296 | INFO     | will attempt to kill all subprocesses of pid=2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:42,231 | INFO     | process IDs to be killed: [2104833] (in reverse order)
[2025-11-24 00:09:23] 2025-11-24 05:08:42,484 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:09:23] 2025-11-24 05:08:42,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:09:23] 2025-11-24 05:08:42,524 | INFO     | did not find any defunct processes belonging to 2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:42,549 | INFO     | did not find any defunct processes belonging to 2104833
[2025-11-24 00:09:23] 2025-11-24 05:08:42,555 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:09:23] 2025-11-24 05:08:42,555 | INFO     | ready for new job
[2025-11-24 00:09:23] 2025-11-24 05:08:42,556 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:09:23] 2025-11-24 05:08:42,573 | INFO     | ***************************************
[2025-11-24 00:09:23] 2025-11-24 05:08:42,573 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:09:23] 2025-11-24 05:08:42,573 | INFO     | ***************************************
[2025-11-24 00:09:23] 2025-11-24 05:08:42,573 | INFO     | 
[2025-11-24 00:09:23] 2025-11-24 05:08:42,587 | INFO     | architecture information:
[2025-11-24 00:09:23] 2025-11-24 05:08:42,588 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:09:23] 2025-11-24 05:08:42,648 | INFO     | cat /etc/os-release:
[2025-11-24 00:09:23] NAME="CentOS Linux"
[2025-11-24 00:09:23] VERSION="7 (Core)"
[2025-11-24 00:09:23] ID="centos"
[2025-11-24 00:09:23] ID_LIKE="rhel fedora"
[2025-11-24 00:09:23] VERSION_ID="7"
[2025-11-24 00:09:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:09:23] ANSI_COLOR="0;31"
[2025-11-24 00:09:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:09:23] HOME_URL="https://www.centos.org/"
[2025-11-24 00:09:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:09:23] 
[2025-11-24 00:09:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:09:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:09:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:09:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:09:23] 
[2025-11-24 00:09:23] 2025-11-24 05:08:42,649 | INFO     | ***************************************
[2025-11-24 00:09:23] 2025-11-24 05:08:43,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 00:09:23] 2025-11-24 05:08:43,215 | INFO     | sufficient remaining disk space (48947527680 B)
[2025-11-24 00:09:23] 2025-11-24 05:08:43,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:09:23] 2025-11-24 05:08:43,216 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:09:23] 2025-11-24 05:08:43,216 | INFO     | update_server=False
[2025-11-24 00:09:23] 2025-11-24 05:08:43,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:09:23] 2025-11-24 05:08:43,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:09:23] 2025-11-24 05:08:43,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:09:23] 2025-11-24 05:08:43,218 | INFO     | aborting loop
[2025-11-24 00:09:23] 2025-11-24 05:08:44,079 | INFO     | all payload control threads have been joined
[2025-11-24 00:09:23] 2025-11-24 05:08:44,224 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:44,249 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:44,306 | INFO     | all data control threads have been joined
[2025-11-24 00:09:23] 2025-11-24 05:08:44,656 | INFO     | all job control threads have been joined
[2025-11-24 00:09:23] 2025-11-24 05:08:44,791 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:44,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,007 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,010 | INFO     | [job] validate thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,028 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,085 | INFO     | [payload] control thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:09:23] 2025-11-24 05:08:45,227 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,311 | INFO     | [data] control thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,360 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,383 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,593 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:45,665 | INFO     | [job] control thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:46,229 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:08:46,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:09:23] 2025-11-24 05:08:50,632 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:09:23] 2025-11-24 05:09:00,587 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:09:23] 2025-11-24 05:09:01,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858922587968)>', '<ExcThread(monitor, started 139858295125760)>']
[2025-11-24 00:09:23] 2025-11-24 05:09:07,059 | INFO     | all workflow threads have been joined
[2025-11-24 00:09:23] 2025-11-24 05:09:07,059 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:09:23] 2025-11-24 05:09:07,059 | INFO     | traces error code: 0
[2025-11-24 00:09:23] 2025-11-24 05:09:07,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:09:23] 2025-11-24 05:09:19,225 | INFO     | PID=2097659 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 00:09:23] 2025-11-24 05:09:19,226 | INFO     | .. there are 9 such processes running
[2025-11-24 00:09:23] 2025-11-24 05:09:19,226 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:09:23] 2025-11-24 05:09:19,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:09:23] 2025-11-24 05:09:19,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:09:23] 2025-11-24 05:09:19,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:09:23] 2025-11-24 05:09:19,227 | INFO     | [monitor] control thread has ended
[2025-11-24 00:09:23] 2025-11-24 05:09:19,883 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:09:23] 2025-11-24 05:09:19,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:09:23] 2025-11-24 05:09:19,972 [wrapper] pilotpid: 2097659
[2025-11-24 00:09:23] 2025-11-24 05:09:19,991 [wrapper] Pilot exit status: 0
[2025-11-24 00:09:23] 2025-11-24 05:09:20,105 [wrapper] pandaids: 6894269229
[2025-11-24 00:09:23] 2025-11-24 05:09:21,692 [wrapper] cleanup supervisor_pilot 1174273 2097660
[2025-11-24 00:09:23] 2025-11-24 05:09:21,744 [wrapper] Test setup, not cleaning
[2025-11-24 00:09:23] 2025-11-24 05:09:21,781 [wrapper] apfmon messages muted
[2025-11-24 00:09:23] 2025-11-24 05:09:21,827 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:09:23] 2025-11-24 05:09:21,878 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:09:23]  *** Error codes and diagnostics ***
[2025-11-24 00:09:23]     "exeErrorCode": 0,
[2025-11-24 00:09:23]     "exeErrorDiag": "",
[2025-11-24 00:09:23]     "pilotErrorCode": 0,
[2025-11-24 00:09:23]     "pilotErrorDiag": "",
[2025-11-24 00:09:23]  *** Listing of results directory ***
[2025-11-24 00:09:23] total 1340052
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 01:04 pilot3.tar.gz
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 01:09 queuedata.json
[2025-11-24 00:09:23] -rwx------. 1 boincer umatlas     36292 Nov 21 01:12 runpilot2-wrapper.sh
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas       100 Nov 22 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:09:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 06:47 run_atlas
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas       105 Nov 22 06:47 job.xml
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas 409292101 Nov 22 06:47 EVNT.47493127._002280.pool.root.1
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 06:47 start_atlas.sh
[2025-11-24 00:09:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 06:47 shared
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas    590107 Nov 22 06:47 input.tar.gz
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas         0 Nov 22 06:47 boinc_lockfile
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 06:47 pandaJob.out
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas        57 Nov 22 06:47 setup.sh.local
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas    989768 Nov 22 06:48 agis_schedconf.cvmfs.json
[2025-11-24 00:09:23] drwx------. 5 boincer umatlas      4096 Nov 22 06:48 pilot3
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas       533 Nov 23 23:08 boinc_task_state.xml
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas      6528 Nov 24 00:01 init_data.xml
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas 915631234 Nov 24 00:04 HITS.47533967._002513.pool.root.1
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas      1058 Nov 24 00:07 memory_monitor_summary.json
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas   1526164 Nov 24 00:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas   3149723 Nov 24 00:07 log.47533967._002513.job.log.tgz.1
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas        95 Nov 24 00:08 pilot_heartbeat.json
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas      7958 Nov 24 00:08 heartbeat.json
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 00:09 boinc_mmap_file
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas        29 Nov 24 00:09 wrapper_checkpoint.txt
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas       822 Nov 24 00:09 pilotlog.txt
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas  18541768 Nov 24 00:09 log.47533967._002513.job.log.1
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas       353 Nov 24 00:09 output.list
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas       620 Nov 24 00:09 runtime_log
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas  21708800 Nov 24 00:09 result.tar.gz
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 00:09 runtime_log.err
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas       663 Nov 24 00:09 kYVMDmOYZg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5OHKDmMBh1Qm.diag
[2025-11-24 00:09:23] -rw-r--r--. 1 boincer umatlas     21851 Nov 24 00:09 stderr.txt
[2025-11-24 00:09:23] HITS file was successfully produced:
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas 915631234 Nov 24 00:04 shared/HITS.pool.root.1
[2025-11-24 00:09:23]  *** Contents of shared directory: ***
[2025-11-24 00:09:23] total 1315672
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas 409292101 Nov 22 06:47 ATLAS.root_0
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 06:47 start_atlas.sh
[2025-11-24 00:09:23] -rw-r--r--. 2 boincer umatlas    590107 Nov 22 06:47 input.tar.gz
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas 915631234 Nov 24 00:04 HITS.pool.root.1
[2025-11-24 00:09:23] -rw-------. 1 boincer umatlas  21708800 Nov 24 00:09 result.tar.gz
00:09:24 (2093977): run_atlas exited; CPU time 490335.355567
00:09:24 (2093977): called boinc_finish(0)

</stderr_txt>
]]>

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