Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:48:03 (2223575): wrapper (7.7.26015): starting
13:48:03 (2223575): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 13:48:03] Arguments: --nthreads 3
[2025-11-23 13:48:03] Threads: 3
[2025-11-23 13:48:03] Checking for CVMFS
[2025-11-23 13:48:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:48:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:48:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:48:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:48:03] 2.12.7.0 3613689 2280 43852 153209 1 89 4435024 6144000 7254 130560 0 8055848 99.932 547099 705 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 13:48:03] CVMFS is ok
[2025-11-23 13:48:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 13:48:03] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 13:48:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 13:48:03] Further information can be found at the LHC@home message board.
[2025-11-23 13:48:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:48:03] Checking for apptainer binary...
[2025-11-23 13:48:03] apptainer is not installed, using version from CVMFS
[2025-11-23 13:48:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:48:03] biggy
[2025-11-23 13:48:03] apptainer works
[2025-11-23 13:48:03] Set ATHENA_PROC_NUMBER=3
[2025-11-23 13:48:03] Set ATHENA_CORE_NUMBER=3
[2025-11-23 13:48:03] Starting ATLAS job with PandaID=6893886564
[2025-11-23 13:48:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:55:10]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:55:10] 2025-11-23 21:54:25,783 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-23 22:55:10] 2025-11-23 21:54:26,392 | INFO     | monitor loop #2459: job 0:6893886564 is in state 'finished'
[2025-11-23 22:55:10] 2025-11-23 21:54:26,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:55:10] 2025-11-23 21:54:27,198 | INFO     | time since job start (32779s) is within the limit (172800.0s)
[2025-11-23 22:55:10] 2025-11-23 21:54:27,744 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:55:10] 2025-11-23 21:54:27,744 | INFO     | job 6893886564 has state=finished
[2025-11-23 22:55:10] 2025-11-23 21:54:27,744 | INFO     | preparing for final server update for job 6893886564 in state='finished'
[2025-11-23 22:55:10] 2025-11-23 21:54:27,746 | INFO     | this job has now completed (state=finished)
[2025-11-23 22:55:10] 2025-11-23 21:54:27,746 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-23 22:55:10] 2025-11-23 21:54:27,746 | INFO     | log transfer has been attempted: DONE
[2025-11-23 22:55:10] 2025-11-23 21:54:27,747 | INFO     | job 6893886564 has finished - writing final server update
[2025-11-23 22:55:10] 2025-11-23 21:54:27,747 | INFO     | total number of processed events: 1000 (read)
[2025-11-23 22:55:10] 2025-11-23 21:54:27,747 | INFO     | executing command: lscpu
[2025-11-23 22:55:10] 2025-11-23 21:54:27,765 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-23 22:55:10] 2025-11-23 21:54:28,895 | INFO     | monitor loop #2460: job 0:6893886564 is in state 'finished'
[2025-11-23 22:55:10] 2025-11-23 21:54:28,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:55:10] 2025-11-23 21:54:29,203 | INFO     | time since job start (32781s) is within the limit (172800.0s)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,135 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 22:55:10] 2025-11-23 21:54:30,137 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5123.8895625
[2025-11-23 22:55:10] 2025-11-23 21:54:30,138 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6893886564/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,139 | INFO     | extracted standard info from prmon json
[2025-11-23 22:55:10] 2025-11-23 21:54:30,139 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:55:10] 2025-11-23 21:54:30,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:55:10] 2025-11-23 21:54:30,142 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:55:10] 2025-11-23 21:54:30,142 | INFO     | sum of square deviations: 48017525428.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,144 | INFO     | sum of deviations: 3291110733292.0005
[2025-11-23 22:55:10] 2025-11-23 21:54:30,144 | INFO     | mean x: 1763918455.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,144 | INFO     | mean y: 4064019.413407821
[2025-11-23 22:55:10] 2025-11-23 21:54:30,144 | INFO     | intersect: -120894522656.13364
[2025-11-23 22:55:10] 2025-11-23 21:54:30,144 | INFO     | chi2: 20.721330695430083
[2025-11-23 22:55:10] 2025-11-23 21:54:30,145 | INFO     | sum of square deviations: 46688700513.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | sum of deviations: 3407680439268.5005
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | mean x: 1763918302.5
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | mean y: 4077322.1334586465
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | intersect: -128739490818.58362
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | chi2: 18.782341263604767
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | current chi2=18.782341263604767 (change=9.357456141814986 %)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | right removable region: 531
[2025-11-23 22:55:10] 2025-11-23 21:54:30,147 | INFO     | sum of square deviations: 46688700513.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | sum of deviations: 3067650884817.501
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | mean x: 1763918607.5
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | mean y: 4089629.8590225563
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | intersect: -115893042172.65851
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | chi2: 18.728672483100716
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | current chi2=18.728672483100716 (change=9.61645871888349 %)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | left removable region: 10
[2025-11-23 22:55:10] 2025-11-23 21:54:30,150 | INFO     | sum of square deviations: 43852059420.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,152 | INFO     | sum of deviations: 3006821526309.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,152 | INFO     | mean x: 1763918577.0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,152 | INFO     | mean y: 4122558.366602687
[2025-11-23 22:55:10] 2025-11-23 21:54:30,152 | INFO     | intersect: -120943181128.83476
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | chi2: 16.14671372368861
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | current memory leak: 68.57 B/s (using 521 data points, chi2=16.15)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | could have reported an average CPU frequency of 5120 MHz (22 samples)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | ..............................
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . Timing measurements:
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . get job = 0 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . initial setup = 1 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . payload setup = 2 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . stage-in = 0 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . payload execution = 32751 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . stage-out = 3 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | . log creation = 0 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,153 | INFO     | ..............................
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | 
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | job summary report
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | --------------------------------------------------
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | PanDA job id: 6893886564
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | task id: 47523449
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | errors: (none)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | pilot state: finished 
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | transexitcode: 0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | exeerrorcode: 0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | exeerrordiag: 
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | exitcode: 0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | exitmsg: OK
[2025-11-23 22:55:10] 2025-11-23 21:54:30,179 | INFO     | cpuconsumptiontime: 97116 s
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | nevents: 1000
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | neventsw: 0
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | pid: 2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | pgrp: 2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | corecount: 3
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | event service: False
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | sizes: {0: 2298816, 2: 2299078, 10: 2299106, 32757: 2339874, 32761: 2348888, 32764: 2348944, 32768: 2349318}
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | --------------------------------------------------
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | 
[2025-11-23 22:55:10] 2025-11-23 21:54:30,180 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/9
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | job 6893886564 has completed (purged errors)
[2025-11-23 22:55:10] 2025-11-23 21:54:30,192 | INFO     | overall cleanup function is called
[2025-11-23 22:55:10] 2025-11-23 21:54:31,203 | INFO     | --- collectZombieJob: --- 10, [2234213]
[2025-11-23 22:55:10] 2025-11-23 21:54:31,203 | INFO     | zombie collector waiting for pid 2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:31,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:55:10] 2025-11-23 21:54:31,203 | INFO     | collected zombie processes
[2025-11-23 22:55:10] 2025-11-23 21:54:31,203 | INFO     | will attempt to kill all subprocesses of pid=2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:31,334 | INFO     | process IDs to be killed: [2234213] (in reverse order)
[2025-11-23 22:55:10] 2025-11-23 21:54:31,391 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:55:10] 2025-11-23 21:54:31,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:55:10] 2025-11-23 21:54:31,396 | INFO     | did not find any defunct processes belonging to 2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:31,400 | INFO     | did not find any defunct processes belonging to 2234213
[2025-11-23 22:55:10] 2025-11-23 21:54:31,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:55:10] 2025-11-23 21:54:31,401 | INFO     | ready for new job
[2025-11-23 22:55:10] 2025-11-23 21:54:31,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:55:10] 2025-11-23 21:54:31,402 | INFO     | ***************************************
[2025-11-23 22:55:10] 2025-11-23 21:54:31,402 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:55:10] 2025-11-23 21:54:31,402 | INFO     | ***************************************
[2025-11-23 22:55:10] 2025-11-23 21:54:31,402 | INFO     | 
[2025-11-23 22:55:10] 2025-11-23 21:54:31,403 | INFO     | architecture information:
[2025-11-23 22:55:10] 2025-11-23 21:54:31,403 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:55:10] 2025-11-23 21:54:31,415 | INFO     | cat /etc/os-release:
[2025-11-23 22:55:10] NAME="CentOS Linux"
[2025-11-23 22:55:10] VERSION="7 (Core)"
[2025-11-23 22:55:10] ID="centos"
[2025-11-23 22:55:10] ID_LIKE="rhel fedora"
[2025-11-23 22:55:10] VERSION_ID="7"
[2025-11-23 22:55:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:55:10] ANSI_COLOR="0;31"
[2025-11-23 22:55:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:55:10] HOME_URL="https://www.centos.org/"
[2025-11-23 22:55:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:55:10] 
[2025-11-23 22:55:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:55:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:55:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:55:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:55:10] 
[2025-11-23 22:55:10] 2025-11-23 21:54:31,415 | INFO     | ***************************************
[2025-11-23 22:55:10] 2025-11-23 21:54:31,919 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/9
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | INFO     | sufficient remaining disk space (946006392832 B)
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | INFO     | update_server=False
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:55:10] 2025-11-23 21:54:31,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:55:10] 2025-11-23 21:54:32,027 | INFO     | all payload control threads have been joined
[2025-11-23 22:55:10] 2025-11-23 21:54:32,375 | INFO     | all job control threads have been joined
[2025-11-23 22:55:10] 2025-11-23 21:54:32,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:55:10] 2025-11-23 21:54:32,403 | INFO     | aborting loop
[2025-11-23 22:55:10] 2025-11-23 21:54:32,545 | INFO     | all data control threads have been joined
[2025-11-23 22:55:10] 2025-11-23 21:54:32,937 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:32,938 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,032 | INFO     | [payload] control thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,124 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,284 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,380 | INFO     | [job] control thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,408 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,550 | INFO     | [data] control thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,747 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,750 | INFO     | [job] validate thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,765 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,883 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,939 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:33,945 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:34,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:54:35,939 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:55:10] 2025-11-23 21:55:02,442 | INFO     | PID=2227448 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 22:55:10] 2025-11-23 21:55:02,442 | INFO     | .. there are 10 such processes running
[2025-11-23 22:55:10] 2025-11-23 21:55:02,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:55:10] 2025-11-23 21:55:02,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:55:10] 2025-11-23 21:55:02,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:55:10] 2025-11-23 21:55:02,853 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:55:10] 2025-11-23 21:55:04,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133146495952704)>', '<ExcThread(monitor, started 133145571608320)>']
[2025-11-23 22:55:10] 2025-11-23 21:55:04,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:55:10] 2025-11-23 21:55:04,454 | INFO     | [monitor] control thread has ended
[2025-11-23 22:55:10] 2025-11-23 21:55:09,456 | INFO     | all workflow threads have been joined
[2025-11-23 22:55:10] 2025-11-23 21:55:09,456 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:55:10] 2025-11-23 21:55:09,456 | INFO     | traces error code: 0
[2025-11-23 22:55:10] 2025-11-23 21:55:09,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:55:10] 2025-11-23 21:55:09,539 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:55:10] 2025-11-23 21:55:09,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:55:10] 2025-11-23 21:55:09,542 [wrapper] pilotpid: 2227448
[2025-11-23 22:55:10] 2025-11-23 21:55:09,544 [wrapper] Pilot exit status: 0
[2025-11-23 22:55:10] 2025-11-23 21:55:09,552 [wrapper] pandaids: 6893886564
[2025-11-23 22:55:10] 2025-11-23 21:55:09,585 [wrapper] cleanup supervisor_pilot 2889912 2227449
[2025-11-23 22:55:10] 2025-11-23 21:55:09,588 [wrapper] Test setup, not cleaning
[2025-11-23 22:55:10] 2025-11-23 21:55:09,591 [wrapper] apfmon messages muted
[2025-11-23 22:55:10] 2025-11-23 21:55:09,592 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:55:10] 2025-11-23 21:55:09,593 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:55:10]  *** Error codes and diagnostics ***
[2025-11-23 22:55:10]     "exeErrorCode": 0,
[2025-11-23 22:55:10]     "exeErrorDiag": "",
[2025-11-23 22:55:10]     "pilotErrorCode": 0,
[2025-11-23 22:55:10]     "pilotErrorDiag": "",
[2025-11-23 22:55:10]  *** Listing of results directory ***
[2025-11-23 22:55:10] total 1312104
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc    576529 Nov 20 23:26 pilot3.tar.gz
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc      5112 Nov 20 23:44 queuedata.json
[2025-11-23 22:55:10] -rwx------ 1 boinc boinc     36292 Nov 20 23:47 runpilot2-wrapper.sh
[2025-11-23 22:55:10] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 13:47 run_atlas
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc       105 Nov 23 13:47 job.xml
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc       100 Nov 23 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc 412012087 Nov 23 13:48 EVNT.47493127._000957.pool.root.1
[2025-11-23 22:55:10] drwxrwx--x 2 boinc boinc         5 Nov 23 13:48 shared
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc    590098 Nov 23 13:48 input.tar.gz
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc     15847 Nov 23 13:48 start_atlas.sh
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc      6806 Nov 23 13:48 init_data.xml
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc         0 Nov 23 13:48 boinc_setup_complete
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc         0 Nov 23 13:48 boinc_lockfile
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc      2785 Nov 23 13:48 pandaJob.out
[2025-11-23 22:55:10] -rw------- 1 boinc boinc    989784 Nov 23 13:48 agis_schedconf.cvmfs.json
[2025-11-23 22:55:10] drwx------ 5 boinc boinc        22 Nov 23 13:48 pilot3
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc       531 Nov 23 22:50 boinc_task_state.xml
[2025-11-23 22:55:10] -rw------- 1 boinc boinc 920589306 Nov 23 22:53 HITS.47523449._009564.pool.root.1
[2025-11-23 22:55:10] -rw------- 1 boinc boinc      1066 Nov 23 22:54 memory_monitor_summary.json
[2025-11-23 22:55:10] -rw------- 1 boinc boinc   1526164 Nov 23 22:54 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:55:10] -rw------- 1 boinc boinc   1249786 Nov 23 22:54 log.47523449._009564.job.log.tgz.1
[2025-11-23 22:55:10] -rw------- 1 boinc boinc      8605 Nov 23 22:54 heartbeat.json
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:54 boinc_mmap_file
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc        28 Nov 23 22:54 wrapper_checkpoint.txt
[2025-11-23 22:55:10] -rw------- 1 boinc boinc        95 Nov 23 22:55 pilot_heartbeat.json
[2025-11-23 22:55:10] -rw------- 1 boinc boinc      4835 Nov 23 22:55 pilotlog.txt
[2025-11-23 22:55:10] -rw------- 1 boinc boinc   4719092 Nov 23 22:55 log.47523449._009564.job.log.1
[2025-11-23 22:55:10] -rw------- 1 boinc boinc       353 Nov 23 22:55 output.list
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:55 runtime_log
[2025-11-23 22:55:10] -rw------- 1 boinc boinc   5990400 Nov 23 22:55 result.tar.gz
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc      8940 Nov 23 22:55 runtime_log.err
[2025-11-23 22:55:10] -rw------- 1 boinc boinc       661 Nov 23 22:55 grTMDmwbSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxdIKDmxaqZFn.diag
[2025-11-23 22:55:10] -rw-r--r-- 1 boinc boinc     21885 Nov 23 22:55 stderr.txt
[2025-11-23 22:55:10] HITS file was successfully produced:
[2025-11-23 22:55:10] -rw------- 1 boinc boinc 920589306 Nov 23 22:53 shared/HITS.pool.root.1
[2025-11-23 22:55:10]  *** Contents of shared directory: ***
[2025-11-23 22:55:10] total 1302984
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc 412012087 Nov 23 13:48 ATLAS.root_0
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc    590098 Nov 23 13:48 input.tar.gz
[2025-11-23 22:55:10] -rw-r--r-- 2 boinc boinc     15847 Nov 23 13:48 start_atlas.sh
[2025-11-23 22:55:10] -rw------- 1 boinc boinc 920589306 Nov 23 22:53 HITS.pool.root.1
[2025-11-23 22:55:10] -rw------- 1 boinc boinc   5990400 Nov 23 22:55 result.tar.gz
22:55:11 (2223575): run_atlas exited; CPU time 97244.689917
22:55:11 (2223575): called boinc_finish(0)

</stderr_txt>
]]>

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