Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:55 (2810324): wrapper (7.7.26015): starting
04:51:55 (2810324): wrapper: running run_atlas (--nthreads 2)
[2025-11-25 04:51:55] Arguments: --nthreads 2
[2025-11-25 04:51:55] Threads: 2
[2025-11-25 04:51:55] Checking for CVMFS
[2025-11-25 04:51:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:51:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:51:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:51:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:51:56] 2.9.2.0 1624889 9110 56840 153268 2 81 20004646 36864000 0 130560 0 2905358 99.910 484109 7608 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 04:51:56] CVMFS is ok
[2025-11-25 04:51:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:51:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:51:56] Further information can be found at the LHC@home message board.
[2025-11-25 04:51:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:51:56] Checking for apptainer binary...
[2025-11-25 04:51:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:51:56] Running /usr/bin/apptainer --version
[2025-11-25 04:51:56] apptainer version 1.4.1-1.1
[2025-11-25 04:51:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:51:56] thA315
[2025-11-25 04:51:56] apptainer works
[2025-11-25 04:51:56] Set ATHENA_PROC_NUMBER=2
[2025-11-25 04:51:56] Set ATHENA_CORE_NUMBER=2
[2025-11-25 04:51:56] Starting ATLAS job with PandaID=6894268014
[2025-11-25 04:51:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:02:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:02:42] 2025-11-25 17:02:11,529 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:02:42] 2025-11-25 17:02:11,529 | INFO     | update_server=False
[2025-11-25 18:02:42] 2025-11-25 17:02:11,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:02:42] 2025-11-25 17:02:11,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:02:42] 2025-11-25 17:02:12,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:02:42] 2025-11-25 17:02:12,011 | INFO     | aborting loop
[2025-11-25 18:02:42] 2025-11-25 17:02:12,100 | INFO     | all data control threads have been joined
[2025-11-25 18:02:42] 2025-11-25 17:02:12,225 | INFO     | all job control threads have been joined
[2025-11-25 18:02:42] 2025-11-25 17:02:12,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:02:42] 2025-11-25 17:02:12,534 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:12,534 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:12,575 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:12,815 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:12,828 | INFO     | all payload control threads have been joined
[2025-11-25 18:02:42] 2025-11-25 17:02:12,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:02:42] 2025-11-25 17:02:13,017 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,106 | INFO     | [data] control thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,178 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,230 | INFO     | [job] control thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,569 | INFO     | [job] validate thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,715 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,729 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,792 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:13,834 | INFO     | [payload] control thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:14,475 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:16,856 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:02:42] 2025-11-25 17:02:17,201 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:02:42] 2025-11-25 17:02:17,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745458050880)>', '<ExcThread(monitor, started 139745107617536)>']
[2025-11-25 18:02:42] 2025-11-25 17:02:22,859 | INFO     | all workflow threads have been joined
[2025-11-25 18:02:42] 2025-11-25 17:02:22,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:02:42] 2025-11-25 17:02:22,860 | INFO     | traces error code: 0
[2025-11-25 18:02:42] 2025-11-25 17:02:22,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | INFO     | PID=2814038 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:02:42] 2025-11-25 17:02:42,470 | INFO     | [monitor] control thread has ended
[2025-11-25 18:02:42] 2025-11-25 17:02:42,512 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:02:42] 2025-11-25 17:02:42,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:02:42] 2025-11-25 17:02:42,516 [wrapper] pilotpid: 2814038
[2025-11-25 18:02:42] 2025-11-25 17:02:42,518 [wrapper] Pilot exit status: 0
[2025-11-25 18:02:42] 2025-11-25 17:02:42,523 [wrapper] pandaids: 6894268014
[2025-11-25 18:02:42] 2025-11-25 17:02:42,537 [wrapper] cleanup supervisor_pilot 2908020 2814039
[2025-11-25 18:02:42] 2025-11-25 17:02:42,539 [wrapper] Test setup, not cleaning
[2025-11-25 18:02:42] 2025-11-25 17:02:42,541 [wrapper] apfmon messages muted
[2025-11-25 18:02:42] 2025-11-25 17:02:42,543 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:02:42] 2025-11-25 17:02:42,545 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:02:42]  *** Error codes and diagnostics ***
[2025-11-25 18:02:42]     "exeErrorCode": 0,
[2025-11-25 18:02:42]     "exeErrorDiag": "",
[2025-11-25 18:02:42]     "pilotErrorCode": 0,
[2025-11-25 18:02:42]     "pilotErrorDiag": "",
[2025-11-25 18:02:42]  *** Listing of results directory ***
[2025-11-25 18:02:42] total 1329108
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:43 queuedata.json
[2025-11-25 18:02:42] -rwx------ 1 boinc boinc     36292 Nov 21 06:44 runpilot2-wrapper.sh
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc       100 Nov 25 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:02:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 04:51 run_atlas
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc       105 Nov 25 04:51 job.xml
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc 411548719 Nov 25 04:51 EVNT.47493127._002262.pool.root.1
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc    590107 Nov 25 04:51 input.tar.gz
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:51 start_atlas.sh
[2025-11-25 18:02:42] drwxrwx--x 2 boinc boinc      4096 Nov 25 04:51 shared
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:51 boinc_setup_complete
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      6207 Nov 25 04:51 init_data.xml
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:51 boinc_lockfile
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      2786 Nov 25 04:51 pandaJob.out
[2025-11-25 18:02:42] -rw------- 1 boinc boinc    991801 Nov 25 04:52 agis_schedconf.cvmfs.json
[2025-11-25 18:02:42] drwx------ 5 boinc boinc      4096 Nov 25 04:52 pilot3
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc       532 Nov 25 17:58 boinc_task_state.xml
[2025-11-25 18:02:42] -rw------- 1 boinc boinc 929835599 Nov 25 18:01 HITS.47533967._002332.pool.root.1
[2025-11-25 18:02:42] -rw------- 1 boinc boinc      1023 Nov 25 18:01 memory_monitor_summary.json
[2025-11-25 18:02:42] -rw------- 1 boinc boinc   1516240 Nov 25 18:01 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:02:42] -rw------- 1 boinc boinc   1257283 Nov 25 18:01 log.47533967._002332.job.log.tgz.1
[2025-11-25 18:02:42] -rw------- 1 boinc boinc        95 Nov 25 18:02 pilot_heartbeat.json
[2025-11-25 18:02:42] -rw------- 1 boinc boinc      8569 Nov 25 18:02 heartbeat.json
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      8192 Nov 25 18:02 boinc_mmap_file
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc        28 Nov 25 18:02 wrapper_checkpoint.txt
[2025-11-25 18:02:42] -rw------- 1 boinc boinc       747 Nov 25 18:02 pilotlog.txt
[2025-11-25 18:02:42] -rw------- 1 boinc boinc   6606396 Nov 25 18:02 log.47533967._002332.job.log.1
[2025-11-25 18:02:42] -rw------- 1 boinc boinc       353 Nov 25 18:02 output.list
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc       620 Nov 25 18:02 runtime_log
[2025-11-25 18:02:42] -rw------- 1 boinc boinc   7884800 Nov 25 18:02 result.tar.gz
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      8898 Nov 25 18:02 runtime_log.err
[2025-11-25 18:02:42] -rw------- 1 boinc boinc       665 Nov 25 18:02 jY4MDmL7Yg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5NHKDmso0Szm.diag
[2025-11-25 18:02:42] -rw-r--r-- 1 boinc boinc      7518 Nov 25 18:02 stderr.txt
[2025-11-25 18:02:42] HITS file was successfully produced:
[2025-11-25 18:02:42] -rw------- 1 boinc boinc 929835599 Nov 25 18:01 shared/HITS.pool.root.1
[2025-11-25 18:02:42]  *** Contents of shared directory: ***
[2025-11-25 18:02:42] total 1318252
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc 411548719 Nov 25 04:51 ATLAS.root_0
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc    590107 Nov 25 04:51 input.tar.gz
[2025-11-25 18:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:51 start_atlas.sh
[2025-11-25 18:02:42] -rw------- 1 boinc boinc 929835599 Nov 25 18:01 HITS.pool.root.1
[2025-11-25 18:02:42] -rw------- 1 boinc boinc   7884800 Nov 25 18:02 result.tar.gz
18:02:43 (2810324): run_atlas exited; CPU time 94084.220800
18:02:43 (2810324): called boinc_finish(0)

</stderr_txt>
]]>

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