Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-22 07:13:33 (26116): vboxwrapper version 26210
2025-11-22 07:13:33 (26116): BOINC client version: 8.2.6
2025-11-22 07:13:34 (26116): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-22 07:13:34 (26116): Successfully copied 'init_data.xml' to the shared directory.
2025-11-22 07:13:34 (26116): Create VM. (boinc_26c3c5bd114d108d, slot#16)
2025-11-22 07:13:35 (26116): Setting Memory Size for VM. (4300MB)
2025-11-22 07:13:35 (26116): Setting CPU Count for VM. (3)
2025-11-22 07:13:35 (26116): Setting Chipset Options for VM.
2025-11-22 07:13:36 (26116): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-22 07:13:36 (26116): Setting Boot Options for VM.
2025-11-22 07:13:36 (26116): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-22 07:13:37 (26116): Enabling VM Network Access.
2025-11-22 07:13:37 (26116): Disabling USB Support for VM.
2025-11-22 07:13:37 (26116): Disabling COM Port Support for VM.
2025-11-22 07:13:38 (26116): Disabling LPT Port Support for VM.
2025-11-22 07:13:38 (26116): Disabling Audio Support for VM.
2025-11-22 07:13:38 (26116): Disabling Clipboard Support for VM.
2025-11-22 07:13:38 (26116): Disabling Drag and Drop Support for VM.
2025-11-22 07:13:39 (26116): Adding storage controller(s) to VM.
2025-11-22 07:13:39 (26116): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-22 07:13:41 (26116): Adding VirtualBox Guest Additions to VM.
2025-11-22 07:13:41 (26116): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-22 07:13:42 (26116): forwarding host port 7555 to guest port 80
2025-11-22 07:13:42 (26116): Enabling remote desktop for VM.
2025-11-22 07:13:42 (26116): Enabling shared directory for VM.
2025-11-22 07:13:43 (26116): Starting VM using VBoxManage interface. (boinc_26c3c5bd114d108d, slot#16)
2025-11-22 07:13:50 (26116): Successfully started VM. (PID = '9336')
2025-11-22 07:13:50 (26116): Reporting VM Process ID to BOINC.
2025-11-22 07:13:50 (26116): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-22 07:13:50 (26116): Guest Log: CPUID EDX: 0x178bfbff
2025-11-22 07:13:50 (26116): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-22 07:13:50 (26116): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-22 07:13:50 (26116): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-22 07:13:50 (26116): Detected: Web Application Enabled (http://localhost:7555)
2025-11-22 07:13:50 (26116): Detected: Remote Desktop Enabled (localhost:7556)
2025-11-22 07:13:50 (26116): Preference change detected
2025-11-22 07:13:50 (26116): Setting CPU throttle for VM. (100%)
2025-11-22 07:13:50 (26116): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-22 07:13:52 (26116): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-22 07:13:52 (26116): Guest Log: BIOS: Booting from Hard Disk...
2025-11-22 07:13:55 (26116): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-22 07:13:55 (26116): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-22 07:13:55 (26116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-22 07:14:03 (26116): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-22 07:14:03 (26116): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-22 07:14:09 (26116): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000167 main     Log opened 2025-11-22T07:14:07.378041000Z
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000275 main     OS Product: Linux
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000311 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000384 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000385 main     Process ID: 1289
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.000385 main     Package type: LINUX_64BITS_GENERIC
2025-11-22 07:14:09 (26116): Guest Log: 00:00:00.001104 main     5.2.32 r132073 started. Verbose level = 0
2025-11-22 07:14:09 (26116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-22 07:14:09 (26116): Guest Log: [INFO] Mounting shared directory
2025-11-22 07:14:09 (26116): Guest Log: [INFO] Checking for init_data.xml
2025-11-22 07:14:19 (26116): Guest Log: 00:00:10.003120 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 663 369 000ns (GuestNow=1 763 813 659 043 624 000 ns GuestLast=1 763 795 647 380 255 000 ns fSetTimeLastLoop=true )
2025-11-22 07:14:20 (26116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-22 07:14:20 (26116): Guest Log: [INFO] Detected branch: prod
2025-11-22 07:14:20 (26116): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-22 07:14:20 (26116): Guest Log: Copying input files
2025-11-22 07:14:22 (26116): Guest Log: Copied input files into RunAtlas.
2025-11-22 07:14:23 (26116): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-22 07:14:23 (26116): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-22 07:14:23 (26116): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-22 07:14:23 (26116): Guest Log: Further information can be found at the LHC@home message board.
2025-11-22 07:15:24 (26116): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-22 07:15:24 (26116): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-22 07:15:24 (26116): Guest Log: 2.6.3.0 1570 1 32196 153172 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-22 07:15:25 (26116): Guest Log: copied the webapp to /var/www
2025-11-22 07:15:25 (26116): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-22 07:15:25 (26116): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-22 07:15:25 (26116): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-22 07:15:25 (26116): Guest Log:  *** Starting ATLAS job. (PandaID=6895323734 taskID=47556137) ***
2025-11-22 08:53:58 (26116): Status Report: Elapsed Time: '6000.000000'
2025-11-22 08:53:59 (26116): Status Report: CPU Time: '14006.593750'
2025-11-22 10:34:09 (26116): Status Report: Elapsed Time: '12000.000000'
2025-11-22 10:34:09 (26116): Status Report: CPU Time: '31817.265625'
2025-11-22 12:14:20 (26116): Status Report: Elapsed Time: '18000.000000'
2025-11-22 12:14:20 (26116): Status Report: CPU Time: '49616.375000'
2025-11-22 13:54:28 (26116): Status Report: Elapsed Time: '24000.000000'
2025-11-22 13:54:28 (26116): Status Report: CPU Time: '67371.203125'
2025-11-22 15:34:33 (26116): Status Report: Elapsed Time: '30000.000000'
2025-11-22 15:34:33 (26116): Status Report: CPU Time: '85167.828125'
2025-11-22 17:14:38 (26116): Status Report: Elapsed Time: '36000.000000'
2025-11-22 17:14:38 (26116): Status Report: CPU Time: '102956.937500'
2025-11-22 18:54:42 (26116): Status Report: Elapsed Time: '42000.000000'
2025-11-22 18:54:42 (26116): Status Report: CPU Time: '120653.078125'
2025-11-22 20:26:22 (26116): Guest Log:  *** Job finished ***
2025-11-22 20:26:22 (26116): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:05,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:05,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:15,204 | INFO     | [monitor] cgroup control has ended
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:16,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349098817344)>', '<ExcThread(monitor, started 140348483413760)>']
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:16,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:16,901 | INFO     | [monitor] control thread has ended
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,735 | INFO     | all workflow threads have been joined
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,735 | INFO     | end of generic workflow (traces error code: 0)
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,735 | INFO     | traces error code: 0
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,735 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,783 [wrapper] ==== pilot stdout END ====
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,786 [wrapper] ==== wrapper stdout RESUME ====
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,789 [wrapper] pilotpid: 6007
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,792 [wrapper] Pilot exit status: 0
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,803 [wrapper] pandaids: 6895323734
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,825 [wrapper] cleanup supervisor_pilot  6108 6008
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,829 [wrapper] Test setup, not cleaning
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,832 [wrapper] apfmon messages muted
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,836 [wrapper] ==== wrapper stdout END ====
2025-11-22 20:26:22 (26116): Guest Log: 2025-11-23 01:26:21,839 [wrapper] ==== wrapper stderr END ====
2025-11-22 20:26:22 (26116): Guest Log:  *** Error codes and diagnostics ***
2025-11-22 20:26:22 (26116): Guest Log:     "exeErrorCode": 0,
2025-11-22 20:26:22 (26116): Guest Log:     "exeErrorDiag": "",
2025-11-22 20:26:22 (26116): Guest Log:     "pilotErrorCode": 0,
2025-11-22 20:26:22 (26116): Guest Log:     "pilotErrorDiag": "",
2025-11-22 20:26:22 (26116): Guest Log:  *** Listing of results directory ***
2025-11-22 20:26:22 (26116): Guest Log: total 910864
2025-11-22 20:26:22 (26116): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 13:17 pilot3.tar.gz
2025-11-22 20:26:22 (26116): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 13:39 runpilot2-wrapper.sh
2025-11-22 20:26:22 (26116): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 13:39 queuedata.json
2025-11-22 20:26:22 (26116): Guest Log: -rwxr-xr-x. 1 atlas atlas     11862 Nov 22 12:14 init_data.xml
2025-11-22 20:26:22 (26116): Guest Log: -rwxr-xr-x. 1 atlas atlas    590094 Nov 22 12:14 input.tar.gz
2025-11-22 20:26:22 (26116): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 22 12:14 start_atlas.sh
2025-11-22 20:26:22 (26116): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 22 12:14 EVNT.47483658._000006.pool.root.1 -> /data/./ATLAS.root_0
2025-11-22 20:26:22 (26116): Guest Log: -rw-r--r--. 1 atlas atlas      2781 Nov 22 12:15 pandaJob.out
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas    989768 Nov 22 12:19 agis_schedconf.cvmfs.json
2025-11-22 20:26:22 (26116): Guest Log: drwx------. 5 atlas atlas      4096 Nov 22 12:19 pilot3
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas 913301809 Nov 23 01:24 HITS.47556137._000057.pool.root.1
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 23 01:25 memory_monitor_summary.json
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 01:25 agis_ddmendpoints.agis.ALL.json
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas   1416316 Nov 23 01:25 log.47556137._000057.job.log.tgz.1
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas      8653 Nov 23 01:25 heartbeat.json
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 01:26 pilot_heartbeat.json
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 23 01:26 pilotlog.txt
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas   6367753 Nov 23 01:26 log.47556137._000057.job.log.1
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 01:26 output.list
2025-11-22 20:26:22 (26116): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 01:26 runtime_log
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas   7802880 Nov 23 01:26 result.tar.gz
2025-11-22 20:26:22 (26116): Guest Log: -rw-r--r--. 1 atlas atlas      8747 Nov 23 01:26 runtime_log.err
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas       661 Nov 23 01:26 alSMDm4Wgg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmadHKDmIGJjtm.diag
2025-11-22 20:26:22 (26116): Guest Log: Looking for outputfile HITS.47556137._000057.pool.root.1
2025-11-22 20:26:22 (26116): Guest Log: HITS file was successfully produced
2025-11-22 20:26:22 (26116): Guest Log: -rw-------. 1 atlas atlas 913301809 Nov 23 01:24 /home/atlas/RunAtlas/HITS.47556137._000057.pool.root.1
2025-11-22 20:26:25 (26116): Guest Log: Successfully finished the ATLAS job!
2025-11-22 20:26:25 (26116): Guest Log: Copying the results back to the shared directory!
2025-11-22 20:26:25 (26116): Guest Log:  *** Contents of shared directory: ***
2025-11-22 20:26:25 (26116): Guest Log: total 1301336
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root 410835328 Nov 22 12:13 ATLAS.root_0
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root 913301809 Nov 23 01:26 HITS.pool.root.1
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root     11862 Nov 22 12:13 init_data.xml
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root    590094 Nov 22 12:09 input.tar.gz
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root   7802880 Nov 23 01:26 result.tar.gz
2025-11-22 20:26:25 (26116): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 22 12:09 start_atlas.sh
2025-11-22 20:26:25 (26116): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-22 20:26:25 (26116): VM Completion File Detected.
2025-11-22 20:26:25 (26116): Powering off VM.
2025-11-22 20:26:26 (26116): Successfully stopped VM.
2025-11-22 20:26:26 (26116): Deregistering VM. (boinc_26c3c5bd114d108d, slot#16)
2025-11-22 20:26:26 (26116): Removing network bandwidth throttle group from VM.
2025-11-22 20:26:27 (26116): Removing VM from VirtualBox.
2025-11-22 20:26:32 (26116): called boinc_finish(0)

</stderr_txt>
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