Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:28:18 (7642): wrapper (7.7.26015): starting
02:28:18 (7642): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:28:18] Arguments: --nthreads 8
[2025-11-25 02:28:18] Threads: 8
[2025-11-25 02:28:18] Checking for CVMFS
[2025-11-25 02:28:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:28:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:28:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:28:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:28:20] 2.11.2.0 32354 283242 136176 153265 0 179 21274551 25165825 4632 130560 12 132982784 99.859 86253301 2748 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:28:20] CVMFS is ok
[2025-11-25 02:28:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:28:20] Checking for apptainer binary...
[2025-11-25 02:28:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:28:20] Running /usr/bin/apptainer --version
[2025-11-25 02:28:20] apptainer version 1.3.2-1.el7
[2025-11-25 02:28:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:28:37] cg-vwn392.simple-grid.lan
[2025-11-25 02:28:37] apptainer works
[2025-11-25 02:28:37] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:28:37] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:28:37] Starting ATLAS job with PandaID=6895331254
[2025-11-25 02:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:51:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:51:40] 2025-11-26 02:50:53,275 | INFO     | PID=11385 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:51:40] 2025-11-26 02:50:53,275 | INFO     | .. there are 9 such processes running
[2025-11-26 03:51:40] 2025-11-26 02:50:54,275 | INFO     | time since job start (91088s) is within the limit (172800.0s)
[2025-11-26 03:51:40] 2025-11-26 02:50:55,226 | INFO     | monitor loop #6104: job 0:6895331254 is in state 'finished'
[2025-11-26 03:51:40] 2025-11-26 02:50:55,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:51:40] 2025-11-26 02:50:56,282 | INFO     | time since job start (91090s) is within the limit (172800.0s)
[2025-11-26 03:51:40] 2025-11-26 02:50:57,742 | INFO     | monitor loop #6105: job 0:6895331254 is in state 'finished'
[2025-11-26 03:51:40] 2025-11-26 02:50:57,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:51:40] 2025-11-26 02:50:58,289 | INFO     | time since job start (91092s) is within the limit (172800.0s)
[2025-11-26 03:51:40] 2025-11-26 02:51:00,253 | INFO     | monitor loop #6106: job 0:6895331254 is in state 'finished'
[2025-11-26 03:51:40] 2025-11-26 02:51:00,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:51:40] 2025-11-26 02:51:00,296 | INFO     | time since job start (91094s) is within the limit (172800.0s)
[2025-11-26 03:51:40] 2025-11-26 02:51:02,303 | INFO     | time since job start (91096s) is within the limit (172800.0s)
[2025-11-26 03:51:40] 2025-11-26 02:51:02,758 | INFO     | monitor loop #6107: job 0:6895331254 is in state 'finished'
[2025-11-26 03:51:40] 2025-11-26 02:51:02,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,461 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:51:40] 2025-11-26 02:51:03,462 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 03:51:40] 2025-11-26 02:51:03,464 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895331254/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,465 | INFO     | extracted standard info from prmon json
[2025-11-26 03:51:40] 2025-11-26 02:51:03,465 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:51:40] 2025-11-26 02:51:03,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:51:40] 2025-11-26 02:51:03,495 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:51:40] 2025-11-26 02:51:03,497 | INFO     | sum of square deviations: 1013400298279.8998
[2025-11-26 03:51:40] 2025-11-26 02:51:03,567 | INFO     | sum of deviations: 4094591314294.392
[2025-11-26 03:51:40] 2025-11-26 02:51:03,568 | INFO     | mean x: 1764080124.630054
[2025-11-26 03:51:40] 2025-11-26 02:51:03,568 | INFO     | mean y: 2830525.3140161727
[2025-11-26 03:51:40] 2025-11-26 02:51:03,568 | INFO     | intersect: -7124843670.450384
[2025-11-26 03:51:40] 2025-11-26 02:51:03,570 | INFO     | chi2: 27.138194733502317
[2025-11-26 03:51:40] 2025-11-26 02:51:03,572 | INFO     | sum of square deviations: 1003192041603.4934
[2025-11-26 03:51:40] 2025-11-26 02:51:03,644 | INFO     | sum of deviations: 4575777200344.8545
[2025-11-26 03:51:40] 2025-11-26 02:51:03,645 | INFO     | mean x: 1764079972.1338742
[2025-11-26 03:51:40] 2025-11-26 02:51:03,645 | INFO     | mean y: 2837712.4401622717
[2025-11-26 03:51:40] 2025-11-26 02:51:03,645 | INFO     | intersect: -8043514911.303637
[2025-11-26 03:51:40] 2025-11-26 02:51:03,647 | INFO     | chi2: 24.03347098255446
[2025-11-26 03:51:40] 2025-11-26 02:51:03,647 | INFO     | current chi2=24.03347098255446 (change=11.440421079722935 %)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,647 | INFO     | right removable region: 1478
[2025-11-26 03:51:40] 2025-11-26 02:51:03,649 | INFO     | sum of square deviations: 1003191018633.4927
[2025-11-26 03:51:40] 2025-11-26 02:51:03,717 | INFO     | sum of deviations: 3471026802515.542
[2025-11-26 03:51:40] 2025-11-26 02:51:03,718 | INFO     | mean x: 1764080277.1338742
[2025-11-26 03:51:40] 2025-11-26 02:51:03,718 | INFO     | mean y: 2839839.492224476
[2025-11-26 03:51:40] 2025-11-26 02:51:03,718 | INFO     | intersect: -6100853086.3689575
[2025-11-26 03:51:40] 2025-11-26 02:51:03,720 | INFO     | chi2: 22.302789649832437
[2025-11-26 03:51:40] 2025-11-26 02:51:03,720 | INFO     | current chi2=22.302789649832437 (change=17.817710909489985 %)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,720 | INFO     | left removable region: 10
[2025-11-26 03:51:40] 2025-11-26 02:51:03,722 | INFO     | sum of square deviations: 980973651323.2441
[2025-11-26 03:51:40] 2025-11-26 02:51:03,790 | INFO     | sum of deviations: 3497202415638.0127
[2025-11-26 03:51:40] 2025-11-26 02:51:03,791 | INFO     | mean x: 1764080246.6423705
[2025-11-26 03:51:40] 2025-11-26 02:51:03,791 | INFO     | mean y: 2857239.4114441415
[2025-11-26 03:51:40] 2025-11-26 02:51:03,791 | INFO     | intersect: -6286145214.033777
[2025-11-26 03:51:40] 2025-11-26 02:51:03,793 | INFO     | chi2: 14.559203292056917
[2025-11-26 03:51:40] 2025-11-26 02:51:03,793 | INFO     | current memory leak: 3.57 B/s (using 1468 data points, chi2=14.56)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | ..............................
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | . Timing measurements:
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | . get job = 0 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | . initial setup = 6 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | . payload setup = 156 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,795 | INFO     | . stage-in = 0 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,796 | INFO     | . payload execution = 90627 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,796 | INFO     | . stage-out = 5 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,796 | INFO     | . log creation = 2 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,796 | INFO     | ..............................
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | 
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | job summary report
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | --------------------------------------------------
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | PanDA job id: 6895331254
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | task id: 47556137
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | errors: (none)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,918 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | pilot state: finished 
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | transexitcode: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | exeerrorcode: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | exeerrordiag: 
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | exitcode: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | exitmsg: OK
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | cpuconsumptiontime: 338172 s
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | nevents: 1000
[2025-11-26 03:51:40] 2025-11-26 02:51:03,919 | INFO     | neventsw: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | pid: 17897
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | pgrp: 17897
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | corecount: 8
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | event service: False
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | sizes: {0: 2283431, 1: 2284287, 2: 2284287, 12: 2284315, 23: 2284343, 34: 2284371, 45: 2284527, 55: 2284555, 66: 2284583, 77: 2284611, 88: 2284667, 99: 2284975, 10
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | --------------------------------------------------
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | 
[2025-11-26 03:51:40] 2025-11-26 02:51:03,920 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-26 03:51:40] 2025-11-26 02:51:03,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:51:40] 2025-11-26 02:51:03,949 | INFO     | job 6895331254 has completed (purged errors)
[2025-11-26 03:51:40] 2025-11-26 02:51:03,949 | INFO     | overall cleanup function is called
[2025-11-26 03:51:40] 2025-11-26 02:51:04,968 | INFO     | --- collectZombieJob: --- 10, [17897]
[2025-11-26 03:51:40] 2025-11-26 02:51:04,969 | INFO     | zombie collector waiting for pid 17897
[2025-11-26 03:51:40] 2025-11-26 02:51:04,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:51:40] 2025-11-26 02:51:04,969 | INFO     | collected zombie processes
[2025-11-26 03:51:40] 2025-11-26 02:51:04,969 | INFO     | will attempt to kill all subprocesses of pid=17897
[2025-11-26 03:51:40] 2025-11-26 02:51:05,115 | INFO     | process IDs to be killed: [17897] (in reverse order)
[2025-11-26 03:51:40] 2025-11-26 02:51:05,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:51:40] 2025-11-26 02:51:05,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:51:40] 2025-11-26 02:51:05,730 | INFO     | did not find any defunct processes belonging to 17897
[2025-11-26 03:51:40] 2025-11-26 02:51:05,736 | INFO     | did not find any defunct processes belonging to 17897
[2025-11-26 03:51:40] 2025-11-26 02:51:05,758 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:51:40] 2025-11-26 02:51:05,758 | INFO     | ready for new job
[2025-11-26 03:51:40] 2025-11-26 02:51:05,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:51:40] 2025-11-26 02:51:05,764 | INFO     | ***************************************
[2025-11-26 03:51:40] 2025-11-26 02:51:05,764 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:51:40] 2025-11-26 02:51:05,764 | INFO     | ***************************************
[2025-11-26 03:51:40] 2025-11-26 02:51:05,765 | INFO     | 
[2025-11-26 03:51:40] 2025-11-26 02:51:05,765 | INFO     | pilot is running in a VM
[2025-11-26 03:51:40] 2025-11-26 02:51:05,765 | INFO     | architecture information:
[2025-11-26 03:51:40] 2025-11-26 02:51:05,766 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:51:40] 2025-11-26 02:51:05,921 | INFO     | cat /etc/os-release:
[2025-11-26 03:51:40] NAME="CentOS Linux"
[2025-11-26 03:51:40] VERSION="7 (Core)"
[2025-11-26 03:51:40] ID="centos"
[2025-11-26 03:51:40] ID_LIKE="rhel fedora"
[2025-11-26 03:51:40] VERSION_ID="7"
[2025-11-26 03:51:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:51:40] ANSI_COLOR="0;31"
[2025-11-26 03:51:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:51:40] HOME_URL="https://www.centos.org/"
[2025-11-26 03:51:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:51:40] 
[2025-11-26 03:51:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:51:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:51:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:51:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:51:40] 
[2025-11-26 03:51:40] 2025-11-26 02:51:05,921 | INFO     | ***************************************
[2025-11-26 03:51:40] 2025-11-26 02:51:06,423 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-26 03:51:40] 2025-11-26 02:51:06,707 | INFO     | sufficient remaining disk space (494982397952 B)
[2025-11-26 03:51:40] 2025-11-26 02:51:06,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:51:40] 2025-11-26 02:51:06,707 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:51:40] 2025-11-26 02:51:06,708 | INFO     | update_server=False
[2025-11-26 03:51:40] 2025-11-26 02:51:06,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:51:40] 2025-11-26 02:51:06,708 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:51:40] 2025-11-26 02:51:06,708 | INFO     | aborting loop
[2025-11-26 03:51:40] 2025-11-26 02:51:06,884 | INFO     | all data control threads have been joined
[2025-11-26 03:51:40] 2025-11-26 02:51:06,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:51:40] 2025-11-26 02:51:06,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:51:40] 2025-11-26 02:51:07,498 | INFO     | all payload control threads have been joined
[2025-11-26 03:51:40] 2025-11-26 02:51:07,713 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:07,714 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:07,796 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:07,889 | INFO     | [data] control thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:07,915 | INFO     | [job] validate thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:07,945 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:08,219 | INFO     | all job control threads have been joined
[2025-11-26 03:51:40] 2025-11-26 02:51:08,504 | INFO     | [payload] control thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:08,538 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:08,927 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:08,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:51:40] 2025-11-26 02:51:08,976 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:08,977 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:09,134 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:09,147 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:09,224 | INFO     | [job] control thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:09,941 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:10,922 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:51:40] 2025-11-26 02:51:25,975 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:51:40] 2025-11-26 02:51:28,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123960477504)>', '<ExcThread(monitor, started 140123308029696)>']
[2025-11-26 03:51:40] 2025-11-26 02:51:33,068 | INFO     | all workflow threads have been joined
[2025-11-26 03:51:40] 2025-11-26 02:51:33,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:51:40] 2025-11-26 02:51:33,069 | INFO     | traces error code: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:33,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:51:40] 2025-11-26 02:51:34,341 | INFO     | 91104s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | INFO     | PID=11385 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | INFO     | .. there are 9 such processes running
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:51:40] 2025-11-26 02:51:35,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:51:40] 2025-11-26 02:51:35,544 | INFO     | [monitor] control thread has ended
[2025-11-26 03:51:40] 2025-11-26 02:51:35,895 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:51:40] 2025-11-26 02:51:35,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:51:40] 2025-11-26 02:51:36,042 [wrapper] pilotpid: 11385
[2025-11-26 03:51:40] 2025-11-26 02:51:36,087 [wrapper] Pilot exit status: 0
[2025-11-26 03:51:40] 2025-11-26 02:51:36,425 [wrapper] pandaids: 6895331254
[2025-11-26 03:51:40] 2025-11-26 02:51:37,459 [wrapper] cleanup supervisor_pilot 24883 11386
[2025-11-26 03:51:40] 2025-11-26 02:51:37,573 [wrapper] Test setup, not cleaning
[2025-11-26 03:51:40] 2025-11-26 02:51:37,682 [wrapper] apfmon messages muted
[2025-11-26 03:51:40] 2025-11-26 02:51:37,793 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:51:40] 2025-11-26 02:51:37,873 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:51:40]  *** Error codes and diagnostics ***
[2025-11-26 03:51:40]     "exeErrorCode": 0,
[2025-11-26 03:51:40]     "exeErrorDiag": "",
[2025-11-26 03:51:40]     "pilotErrorCode": 0,
[2025-11-26 03:51:40]     "pilotErrorDiag": "",
[2025-11-26 03:51:40]  *** Listing of results directory ***
[2025-11-26 03:51:40] total 1328824
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc    576529 Nov 22 00:06 pilot3.tar.gz
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc      5112 Nov 22 00:19 queuedata.json
[2025-11-26 03:51:40] -rwx------. 1 boinc boinc     36292 Nov 22 00:22 runpilot2-wrapper.sh
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:51:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:28 run_atlas
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:28 job.xml
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc 410273248 Nov 25 02:28 EVNT.47483658._000167.pool.root.1
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc    590100 Nov 25 02:28 input.tar.gz
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc      6392 Nov 25 02:28 init_data.xml
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:28 start_atlas.sh
[2025-11-26 03:51:40] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:28 shared
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:28 boinc_lockfile
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc      2785 Nov 25 02:28 pandaJob.out
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc    991801 Nov 25 02:32 agis_schedconf.cvmfs.json
[2025-11-26 03:51:40] drwx------. 5 boinc boinc      4096 Nov 25 02:32 pilot3
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:28 boinc_task_state.xml
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc 917212549 Nov 26 03:48 HITS.47556137._001666.pool.root.1
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc      1031 Nov 26 03:49 memory_monitor_summary.json
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc   1516240 Nov 26 03:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc   2541972 Nov 26 03:49 log.47556137._001666.job.log.tgz.1
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc        95 Nov 26 03:50 pilot_heartbeat.json
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc      7942 Nov 26 03:51 heartbeat.json
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc        29 Nov 26 03:51 wrapper_checkpoint.txt
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc      8192 Nov 26 03:51 boinc_mmap_file
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc       936 Nov 26 03:51 pilotlog.txt
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc  12126446 Nov 26 03:51 log.47556137._001666.job.log.1
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc       353 Nov 26 03:51 output.list
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc       620 Nov 26 03:51 runtime_log
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc  14684160 Nov 26 03:51 result.tar.gz
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc      8817 Nov 26 03:51 runtime_log.err
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc       662 Nov 26 03:51 MUKODmbdpg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtlJKDmfjgrxm.diag
[2025-11-26 03:51:40] -rw-r--r--. 1 boinc boinc     21526 Nov 26 03:51 stderr.txt
[2025-11-26 03:51:40] HITS file was successfully produced:
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc 917212549 Nov 26 03:48 shared/HITS.pool.root.1
[2025-11-26 03:51:40]  *** Contents of shared directory: ***
[2025-11-26 03:51:40] total 1311312
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc 410273248 Nov 25 02:28 ATLAS.root_0
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc    590100 Nov 25 02:28 input.tar.gz
[2025-11-26 03:51:40] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:28 start_atlas.sh
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc 917212549 Nov 26 03:48 HITS.pool.root.1
[2025-11-26 03:51:40] -rw-------. 1 boinc boinc  14684160 Nov 26 03:51 result.tar.gz
03:51:42 (7642): run_atlas exited; CPU time 338793.026602
03:51:42 (7642): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN