Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:38 (155369): wrapper (7.7.26015): starting
01:57:38 (155369): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 01:57:38] Arguments: --nthreads 12
[2025-11-22 01:57:38] Threads: 12
[2025-11-22 01:57:38] Checking for CVMFS
[2025-11-22 01:57:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:57:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:57:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:57:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:57:39] 2.11.5.0 2097640 22181 337792 153166 1 279 31364213 45568000 14196 130560 0 216883144 99.794 124280964 22337 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-22 01:57:39] CVMFS is ok
[2025-11-22 01:57:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:57:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:57:39] Further information can be found at the LHC@home message board.
[2025-11-22 01:57:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:57:39] Checking for apptainer binary...
[2025-11-22 01:57:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:57:39] Running /usr/bin/apptainer --version
[2025-11-22 01:57:40] apptainer version 1.4.1-1.el9
[2025-11-22 01:57:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:57:40] wns0049.triumf.lcg
[2025-11-22 01:57:40] apptainer works
[2025-11-22 01:57:40] Set ATHENA_PROC_NUMBER=12
[2025-11-22 01:57:40] Set ATHENA_CORE_NUMBER=12
[2025-11-22 01:57:40] Starting ATLAS job with PandaID=6895331157
[2025-11-22 01:57:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:05:36]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | WARNING  | wrong length of table data, x=[1763805614.0, 1763805675.0, 1763805736.0], y=[1424.0, 650595.0, 616465.0] (must be same and length>=4)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | INFO     | could have reported an average CPU frequency of 2521 MHz (4 samples)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . Timing measurements:
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . get job = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . initial setup = 5 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload setup = 25 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-in = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload execution = 171 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-out = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . log creation = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,283 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331157/pilotlog.txt
[2025-11-22 02:05:36] 2025-11-22 10:05:02,298 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 02:05:36] - Log from pilotlog.txt -
[2025-11-22 02:05:36] 2025-11-22 10:05:02,241 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331157/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,241 | INFO     | extracted standard info from prmon json
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | WARNING  | wrong length of table data, x=[1763805614.0, 1763805675.0, 1763805736.0], y=[1424.0, 650595.0, 616465.0] (must be same and length>=4)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | INFO     | could have reported an average CPU frequency of 2521 MHz (4 samples)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . Timing measurements:
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . get job = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . initial setup = 5 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload setup = 25 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-in = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload execution = 171 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-out = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . log creation = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,283 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331157/pilotlog.txt
[2025-11-22 02:05:36] 2025-11-22 10:05:02,298 | WARNING  | 
[2025-11-22 02:05:36] [begin log extracts]
[2025-11-22 02:05:36] - Log from pilotlog.txt -
[2025-11-22 02:05:36] 2025-11-22 10:05:02,241 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331157/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,241 | INFO     | extracted standard info from prmon json
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 02:05:36] 2025-11-22 10:05:02,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | WARNING  | wrong length of table data, x=[1763805614.0, 1763805675.0, 1763805736.0], y=[1424.0, 650595.0, 616465.0] (must be same and length>=4)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,243 | INFO     | could have reported an average CPU frequency of 2521 MHz (4 samples)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . Timing measurements:
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . get job = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . initial setup = 5 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload setup = 25 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-in = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . payload execution = 171 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . stage-out = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,244 | INFO     | . log creation = 0 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,283 | INFO     | ..............................
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 02:05:36] 2025-11-22 10:05:02,284 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331157/pilotlog.txt
[2025-11-22 02:05:36] [end log extracts]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,298 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,299 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 02:05:36] 2025-11-22 10:05:02,610 | INFO     | 
[2025-11-22 02:05:36] 2025-11-22 10:05:02,610 | INFO     | job summary report
[2025-11-22 02:05:36] 2025-11-22 10:05:02,610 | INFO     | --------------------------------------------------
[2025-11-22 02:05:36] 2025-11-22 10:05:02,610 | INFO     | PanDA job id: 6895331157
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | task id: 47556137
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 02:02:35,398 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | pilot state: failed 
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | transexitcode: 65
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | exeerrorcode: 65
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | exitcode: 65
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | cpuconsumptiontime: 49 s
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | nevents: 0
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | neventsw: 0
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | pid: 165696
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | pgrp: 165696
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | corecount: 12
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | event service: False
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | sizes: {0: 2298632, 1: 2298831, 12: 2298831, 23: 2298859, 31: 2299149, 34: 2299177, 201: 2322506, 202: 2322482, 203: 2326800, 204: 2326828, 339: 2327022}
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | --------------------------------------------------
[2025-11-22 02:05:36] 2025-11-22 10:05:02,611 | INFO     | 
[2025-11-22 02:05:36] 2025-11-22 10:05:02,612 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 02:05:36] 2025-11-22 10:05:02,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,762 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,762 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:05:36] 2025-11-22 10:05:02,762 | INFO     | job 6895331157 has completed (purged errors)
[2025-11-22 02:05:36] 2025-11-22 10:05:02,762 | INFO     | overall cleanup function is called
[2025-11-22 02:05:36] 2025-11-22 10:05:03,769 | INFO     | --- collectZombieJob: --- 10, [165696]
[2025-11-22 02:05:36] 2025-11-22 10:05:03,769 | INFO     | zombie collector waiting for pid 165696
[2025-11-22 02:05:36] 2025-11-22 10:05:03,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:05:36] 2025-11-22 10:05:03,770 | INFO     | collected zombie processes
[2025-11-22 02:05:36] 2025-11-22 10:05:03,770 | INFO     | will attempt to kill all subprocesses of pid=165696
[2025-11-22 02:05:36] 2025-11-22 10:05:04,378 | INFO     | process IDs to be killed: [165696] (in reverse order)
[2025-11-22 02:05:36] 2025-11-22 10:05:04,569 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:05:36] 2025-11-22 10:05:04,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:05:36] 2025-11-22 10:05:04,597 | INFO     | did not find any defunct processes belonging to 165696
[2025-11-22 02:05:36] 2025-11-22 10:05:04,643 | INFO     | did not find any defunct processes belonging to 165696
[2025-11-22 02:05:36] 2025-11-22 10:05:04,644 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:05:36] 2025-11-22 10:05:04,644 | INFO     | ready for new job
[2025-11-22 02:05:36] 2025-11-22 10:05:04,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:05:36] 2025-11-22 10:05:04,665 | INFO     | ***************************************
[2025-11-22 02:05:36] 2025-11-22 10:05:04,665 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:05:36] 2025-11-22 10:05:04,665 | INFO     | ***************************************
[2025-11-22 02:05:36] 2025-11-22 10:05:04,665 | INFO     | 
[2025-11-22 02:05:36] 2025-11-22 10:05:04,667 | INFO     | architecture information:
[2025-11-22 02:05:36] 2025-11-22 10:05:04,672 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:05:36] 2025-11-22 10:05:04,684 | INFO     | cat /etc/os-release:
[2025-11-22 02:05:36] NAME="CentOS Linux"
[2025-11-22 02:05:36] VERSION="7 (Core)"
[2025-11-22 02:05:36] ID="centos"
[2025-11-22 02:05:36] ID_LIKE="rhel fedora"
[2025-11-22 02:05:36] VERSION_ID="7"
[2025-11-22 02:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:05:36] ANSI_COLOR="0;31"
[2025-11-22 02:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:05:36] HOME_URL="https://www.centos.org/"
[2025-11-22 02:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:05:36] 
[2025-11-22 02:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:05:36] 
[2025-11-22 02:05:36] 2025-11-22 10:05:04,685 | INFO     | ***************************************
[2025-11-22 02:05:36] 2025-11-22 10:05:05,188 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 02:05:36] 2025-11-22 10:05:05,252 | INFO     | sufficient remaining disk space (1946425491456 B)
[2025-11-22 02:05:36] 2025-11-22 10:05:05,252 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:05:36] 2025-11-22 10:05:05,252 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:05:36] 2025-11-22 10:05:05,252 | INFO     | update_server=False
[2025-11-22 02:05:36] 2025-11-22 10:05:05,253 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:05:36] 2025-11-22 10:05:05,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:05:36] 2025-11-22 10:05:05,253 | INFO     | aborting loop
[2025-11-22 02:05:36] 2025-11-22 10:05:05,468 | INFO     | all job control threads have been joined
[2025-11-22 02:05:36] 2025-11-22 10:05:05,602 | INFO     | all data control threads have been joined
[2025-11-22 02:05:36] 2025-11-22 10:05:06,258 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:06,259 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:06,474 | INFO     | [job] control thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:06,608 | INFO     | [data] control thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:06,679 | INFO     | all payload control threads have been joined
[2025-11-22 02:05:36] 2025-11-22 10:05:06,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:05:36] 2025-11-22 10:05:06,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,023 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,076 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,077 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,084 | INFO     | [job] validate thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,114 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:05:36] 2025-11-22 10:05:07,452 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,613 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:07,685 | INFO     | [payload] control thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:08,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:05:36] 2025-11-22 10:05:08,391 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:08,748 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:12,355 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:05:36] 2025-11-22 10:05:23,103 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:05:36] 2025-11-22 10:05:23,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451189352256)>', '<ExcThread(monitor, started 140450639890176)>']
[2025-11-22 02:05:36] 2025-11-22 10:05:28,557 | INFO     | all workflow threads have been joined
[2025-11-22 02:05:36] 2025-11-22 10:05:28,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:05:36] 2025-11-22 10:05:28,558 | INFO     | traces error code: 0
[2025-11-22 02:05:36] 2025-11-22 10:05:28,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:05:36] 2025-11-22 10:05:35,207 | INFO     | PID=159044 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 02:05:36] 2025-11-22 10:05:35,207 | INFO     | .. there are 14 such processes running
[2025-11-22 02:05:36] 2025-11-22 10:05:35,208 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:05:36] 2025-11-22 10:05:35,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:05:36] 2025-11-22 10:05:35,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:05:36] 2025-11-22 10:05:35,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:05:36] 2025-11-22 10:05:35,208 | INFO     | [monitor] control thread has ended
[2025-11-22 02:05:36] 2025-11-22 10:05:35,825 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:05:36] 2025-11-22 10:05:35,827 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:05:36] 2025-11-22 10:05:35,829 [wrapper] pilotpid: 159044
[2025-11-22 02:05:36] 2025-11-22 10:05:35,831 [wrapper] Pilot exit status: 0
[2025-11-22 02:05:36] 2025-11-22 10:05:35,842 [wrapper] pandaids: 6895331157
[2025-11-22 02:05:36] 2025-11-22 10:05:35,880 [wrapper] cleanup supervisor_pilot  159050 159045
[2025-11-22 02:05:36] 2025-11-22 10:05:35,882 [wrapper] Test setup, not cleaning
[2025-11-22 02:05:36] 2025-11-22 10:05:35,885 [wrapper] apfmon messages muted
[2025-11-22 02:05:36] 2025-11-22 10:05:35,887 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:05:36] 2025-11-22 10:05:35,889 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:05:36]  *** Error codes and diagnostics ***
[2025-11-22 02:05:36]     "exeErrorCode": 65,
[2025-11-22 02:05:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 02:05:36]     "pilotErrorCode": 1305,
[2025-11-22 02:05:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 02:05:36]  *** Listing of results directory ***
[2025-11-22 02:05:36] total 404932
[2025-11-22 02:05:36] -rwx------. 1 boinc boinc     36292 Nov 21 15:06 runpilot2-wrapper.sh
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc      5112 Nov 21 15:06 queuedata.json
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc    576529 Nov 21 15:06 pilot3.tar.gz
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:05:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:57 run_atlas
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:57 job.xml
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc      6594 Nov 22 01:57 init_data.xml
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc 410405260 Nov 22 01:57 EVNT.47483658._000162.pool.root.1
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc     15847 Nov 22 01:57 start_atlas.sh
[2025-11-22 02:05:36] drwxrwx--x. 2 boinc boinc      4096 Nov 22 01:57 shared
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc    590097 Nov 22 01:57 input.tar.gz
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:57 boinc_lockfile
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc      2785 Nov 22 01:57 pandaJob.out
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc    989768 Nov 22 01:58 agis_schedconf.cvmfs.json
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc   1526164 Nov 22 01:58 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:05:36] drwx------. 5 boinc boinc      4096 Nov 22 01:58 pilot3
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc       524 Nov 22 02:01 boinc_task_state.xml
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc       996 Nov 22 02:02 memory_monitor_summary.json
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc     50262 Nov 22 02:02 log.47556137._001619.job.log.tgz.1
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc      9680 Nov 22 02:05 heartbeat.json
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc      8192 Nov 22 02:05 boinc_mmap_file
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc        23 Nov 22 02:05 wrapper_checkpoint.txt
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc        95 Nov 22 02:05 pilot_heartbeat.json
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc       822 Nov 22 02:05 pilotlog.txt
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc    114846 Nov 22 02:05 log.47556137._001619.job.log.1
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc       186 Nov 22 02:05 output.list
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc       620 Nov 22 02:05 runtime_log
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc    184320 Nov 22 02:05 result.tar.gz
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc      8636 Nov 22 02:05 runtime_log.err
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc       645 Nov 22 02:05 hFTMDmXOpg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoqHKDmBt7r0n.diag
[2025-11-22 02:05:36] -rw-r--r--. 1 boinc boinc     22588 Nov 22 02:05 stderr.txt
[2025-11-22 02:05:36] No HITS result produced
[2025-11-22 02:05:36]  *** Contents of shared directory: ***
[2025-11-22 02:05:36] total 401568
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc 410405260 Nov 22 01:57 ATLAS.root_0
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc     15847 Nov 22 01:57 start_atlas.sh
[2025-11-22 02:05:36] -rw-r--r--. 2 boinc boinc    590097 Nov 22 01:57 input.tar.gz
[2025-11-22 02:05:36] -rw-------. 1 boinc boinc    184320 Nov 22 02:05 result.tar.gz
02:05:38 (155369): run_atlas exited; CPU time 55.983386
02:05:38 (155369): called boinc_finish(0)

</stderr_txt>
]]>

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