Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:07:30 (1539): wrapper (7.7.26015): starting
01:07:30 (1539): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:07:30] Arguments: --nthreads 8
[2025-11-25 01:07:30] Threads: 8
[2025-11-25 01:07:30] Checking for CVMFS
[2025-11-25 01:07:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:07:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:07:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:07:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:07:33] 2.11.2.0 15591 86486 100616 153263 3 85 23166646 25165824 4632 130560 11 24692428 99.874 13693324 1778 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:07:33] CVMFS is ok
[2025-11-25 01:07:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:07:33] Checking for apptainer binary...
[2025-11-25 01:07:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:07:33] Running /usr/bin/apptainer --version
[2025-11-25 01:07:33] apptainer version 1.3.2-1.el7
[2025-11-25 01:07:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:07:50] cg-vwn260.simple-grid.lan
[2025-11-25 01:07:50] apptainer works
[2025-11-25 01:07:50] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:07:50] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:07:50] Starting ATLAS job with PandaID=6894267737
[2025-11-25 01:07:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:03:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:03:30] 2025-11-26 01:02:09,163 | INFO     | time since job start (89425s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:11,170 | INFO     | time since job start (89427s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:11,180 | INFO     | monitor loop #6018: job 0:6894267737 is in state 'finished'
[2025-11-26 02:03:30] 2025-11-26 01:02:11,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:03:30] 2025-11-26 01:02:13,177 | INFO     | time since job start (89429s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:13,686 | INFO     | monitor loop #6019: job 0:6894267737 is in state 'finished'
[2025-11-26 02:03:30] 2025-11-26 01:02:13,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:03:30] 2025-11-26 01:02:14,369 | INFO     | PID=5298 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 02:03:30] 2025-11-26 01:02:14,369 | INFO     | .. there are 9 such processes running
[2025-11-26 02:03:30] 2025-11-26 01:02:15,370 | INFO     | time since job start (89431s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:16,202 | INFO     | monitor loop #6020: job 0:6894267737 is in state 'finished'
[2025-11-26 02:03:30] 2025-11-26 01:02:16,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:03:30] 2025-11-26 01:02:17,386 | INFO     | time since job start (89433s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:18,711 | INFO     | monitor loop #6021: job 0:6894267737 is in state 'finished'
[2025-11-26 02:03:30] 2025-11-26 01:02:18,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,393 | INFO     | time since job start (89435s) is within the limit (172800.0s)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,483 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:03:30] 2025-11-26 01:02:19,484 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:03:30] 2025-11-26 01:02:19,486 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894267737/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,487 | INFO     | extracted standard info from prmon json
[2025-11-26 02:03:30] 2025-11-26 01:02:19,487 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:03:30] 2025-11-26 01:02:19,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:03:30] 2025-11-26 01:02:19,515 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:03:30] 2025-11-26 01:02:19,518 | INFO     | sum of square deviations: 957114457745.1095
[2025-11-26 02:03:30] 2025-11-26 01:02:19,614 | INFO     | sum of deviations: 2827092701498.906
[2025-11-26 02:03:30] 2025-11-26 01:02:19,614 | INFO     | mean x: 1764074429.7905219
[2025-11-26 02:03:30] 2025-11-26 01:02:19,614 | INFO     | mean y: 2849340.3701923075
[2025-11-26 02:03:30] 2025-11-26 01:02:19,614 | INFO     | intersect: -5207814760.463793
[2025-11-26 02:03:30] 2025-11-26 01:02:19,616 | INFO     | chi2: 20.61117768458755
[2025-11-26 02:03:30] 2025-11-26 01:02:19,618 | INFO     | sum of square deviations: 947288502401.7524
[2025-11-26 02:03:30] 2025-11-26 01:02:19,713 | INFO     | sum of deviations: 3304536182590.8975
[2025-11-26 02:03:30] 2025-11-26 01:02:19,714 | INFO     | mean x: 1764074277.294969
[2025-11-26 02:03:30] 2025-11-26 01:02:19,714 | INFO     | mean y: 2856749.2736044107
[2025-11-26 02:03:30] 2025-11-26 01:02:19,714 | INFO     | intersect: -6150967838.820889
[2025-11-26 02:03:30] 2025-11-26 01:02:19,716 | INFO     | chi2: 17.452646814184423
[2025-11-26 02:03:30] 2025-11-26 01:02:19,716 | INFO     | current chi2=17.452646814184423 (change=15.324359038275556 %)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,716 | INFO     | right removable region: 1450
[2025-11-26 02:03:30] 2025-11-26 01:02:19,718 | INFO     | sum of square deviations: 947287356211.7523
[2025-11-26 02:03:30] 2025-11-26 01:02:19,834 | INFO     | sum of deviations: 2243257665207.309
[2025-11-26 02:03:30] 2025-11-26 01:02:19,835 | INFO     | mean x: 1764074582.294969
[2025-11-26 02:03:30] 2025-11-26 01:02:19,835 | INFO     | mean y: 2858399.4128187457
[2025-11-26 02:03:30] 2025-11-26 01:02:19,835 | INFO     | intersect: -4174621435.8041315
[2025-11-26 02:03:30] 2025-11-26 01:02:19,837 | INFO     | chi2: 16.39378132932689
[2025-11-26 02:03:30] 2025-11-26 01:02:19,837 | INFO     | current chi2=16.39378132932689 (change=20.461695201503726 %)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,837 | INFO     | left removable region: 10
[2025-11-26 02:03:30] 2025-11-26 01:02:19,839 | INFO     | sum of square deviations: 925906344342.1676
[2025-11-26 02:03:30] 2025-11-26 01:02:19,932 | INFO     | sum of deviations: 2360338862917.2656
[2025-11-26 02:03:30] 2025-11-26 01:02:19,932 | INFO     | mean x: 1764074551.804861
[2025-11-26 02:03:30] 2025-11-26 01:02:19,933 | INFO     | mean y: 2874847.990277778
[2025-11-26 02:03:30] 2025-11-26 01:02:19,933 | INFO     | intersect: -4494139074.801937
[2025-11-26 02:03:30] 2025-11-26 01:02:19,934 | INFO     | chi2: 9.849069396491618
[2025-11-26 02:03:30] 2025-11-26 01:02:19,935 | INFO     | current memory leak: 2.55 B/s (using 1440 data points, chi2=9.85)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,936 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 02:03:30] 2025-11-26 01:02:19,937 | INFO     | ..............................
[2025-11-26 02:03:30] 2025-11-26 01:02:19,937 | INFO     | . Timing measurements:
[2025-11-26 02:03:30] 2025-11-26 01:02:19,937 | INFO     | . get job = 0 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,937 | INFO     | . initial setup = 7 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,939 | INFO     | . payload setup = 187 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,939 | INFO     | . stage-in = 0 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,940 | INFO     | . payload execution = 88944 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,940 | INFO     | . stage-out = 4 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,940 | INFO     | . log creation = 2 s
[2025-11-26 02:03:30] 2025-11-26 01:02:19,940 | INFO     | ..............................
[2025-11-26 02:03:30] 2025-11-26 01:02:20,056 | INFO     | 
[2025-11-26 02:03:30] 2025-11-26 01:02:20,056 | INFO     | job summary report
[2025-11-26 02:03:30] 2025-11-26 01:02:20,056 | INFO     | --------------------------------------------------
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | PanDA job id: 6894267737
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | task id: 47533967
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | errors: (none)
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | pilot state: finished 
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | transexitcode: 0
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | exeerrorcode: 0
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | exeerrordiag: 
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | exitcode: 0
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | exitmsg: OK
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | cpuconsumptiontime: 335914 s
[2025-11-26 02:03:30] 2025-11-26 01:02:20,057 | INFO     | nevents: 1000
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | neventsw: 0
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | pid: 11903
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | pgrp: 11903
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | corecount: 8
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | event service: False
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 13: 2284366, 24: 2284422, 34: 2284450, 45: 2284606, 56: 2284634, 67: 2284662, 77: 2284690, 88: 2284746, 97: 2285316, 99
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | --------------------------------------------------
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | 
[2025-11-26 02:03:30] 2025-11-26 01:02:20,058 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | job 6894267737 has completed (purged errors)
[2025-11-26 02:03:30] 2025-11-26 01:02:20,101 | INFO     | overall cleanup function is called
[2025-11-26 02:03:30] 2025-11-26 01:02:21,118 | INFO     | --- collectZombieJob: --- 10, [11903]
[2025-11-26 02:03:30] 2025-11-26 01:02:21,119 | INFO     | zombie collector waiting for pid 11903
[2025-11-26 02:03:30] 2025-11-26 01:02:21,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:03:30] 2025-11-26 01:02:21,119 | INFO     | collected zombie processes
[2025-11-26 02:03:30] 2025-11-26 01:02:21,119 | INFO     | will attempt to kill all subprocesses of pid=11903
[2025-11-26 02:03:30] 2025-11-26 01:02:21,236 | INFO     | process IDs to be killed: [11903] (in reverse order)
[2025-11-26 02:03:30] 2025-11-26 01:02:22,144 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:03:30] 2025-11-26 01:02:22,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:03:30] 2025-11-26 01:02:22,148 | INFO     | did not find any defunct processes belonging to 11903
[2025-11-26 02:03:30] 2025-11-26 01:02:22,151 | INFO     | did not find any defunct processes belonging to 11903
[2025-11-26 02:03:30] 2025-11-26 01:02:22,197 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:03:30] 2025-11-26 01:02:22,197 | INFO     | ready for new job
[2025-11-26 02:03:30] 2025-11-26 01:02:22,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:03:30] 2025-11-26 01:02:22,203 | INFO     | ***************************************
[2025-11-26 02:03:30] 2025-11-26 01:02:22,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:03:30] 2025-11-26 01:02:22,203 | INFO     | ***************************************
[2025-11-26 02:03:30] 2025-11-26 01:02:22,203 | INFO     | 
[2025-11-26 02:03:30] 2025-11-26 01:02:22,204 | INFO     | pilot is running in a VM
[2025-11-26 02:03:30] 2025-11-26 01:02:22,204 | INFO     | architecture information:
[2025-11-26 02:03:30] 2025-11-26 01:02:22,215 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:03:30] 2025-11-26 01:02:22,421 | INFO     | cat /etc/os-release:
[2025-11-26 02:03:30] NAME="CentOS Linux"
[2025-11-26 02:03:30] VERSION="7 (Core)"
[2025-11-26 02:03:30] ID="centos"
[2025-11-26 02:03:30] ID_LIKE="rhel fedora"
[2025-11-26 02:03:30] VERSION_ID="7"
[2025-11-26 02:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:03:30] ANSI_COLOR="0;31"
[2025-11-26 02:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:03:30] HOME_URL="https://www.centos.org/"
[2025-11-26 02:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:03:30] 
[2025-11-26 02:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:03:30] 
[2025-11-26 02:03:30] 2025-11-26 01:02:22,421 | INFO     | ***************************************
[2025-11-26 02:03:30] 2025-11-26 01:02:22,925 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 02:03:30] 2025-11-26 01:02:23,147 | INFO     | sufficient remaining disk space (496127442944 B)
[2025-11-26 02:03:30] 2025-11-26 01:02:23,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:03:30] 2025-11-26 01:02:23,147 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:03:30] 2025-11-26 01:02:23,148 | INFO     | update_server=False
[2025-11-26 02:03:30] 2025-11-26 01:02:23,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:03:30] 2025-11-26 01:02:23,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:03:30] 2025-11-26 01:02:23,153 | INFO     | aborting loop
[2025-11-26 02:03:30] 2025-11-26 01:02:23,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:03:30] 2025-11-26 01:02:23,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:03:30] 2025-11-26 01:02:23,273 | INFO     | all data control threads have been joined
[2025-11-26 02:03:30] 2025-11-26 01:02:23,397 | INFO     | all payload control threads have been joined
[2025-11-26 02:03:30] 2025-11-26 01:02:24,154 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,154 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,159 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,279 | INFO     | [data] control thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,403 | INFO     | [payload] control thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,431 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,592 | INFO     | all job control threads have been joined
[2025-11-26 02:03:30] 2025-11-26 01:02:24,896 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,920 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:24,922 | INFO     | [job] validate thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:25,073 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:03:30] 2025-11-26 01:02:25,162 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:25,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:25,557 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:25,598 | INFO     | [job] control thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:26,078 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:27,166 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:03:30] 2025-11-26 01:02:52,583 | INFO     | PID=5298 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 02:03:30] 2025-11-26 01:02:52,583 | INFO     | .. there are 9 such processes running
[2025-11-26 02:03:30] 2025-11-26 01:02:52,583 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:03:30] 2025-11-26 01:02:52,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:03:30] 2025-11-26 01:02:52,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:03:30] 2025-11-26 01:03:19,788 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:03:30] 2025-11-26 01:03:20,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749895759680)>', '<ExcThread(monitor, started 139749209650944)>']
[2025-11-26 02:03:30] 2025-11-26 01:03:20,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:03:30] 2025-11-26 01:03:20,749 | INFO     | [monitor] control thread has ended
[2025-11-26 02:03:30] 2025-11-26 01:03:25,710 | INFO     | all workflow threads have been joined
[2025-11-26 02:03:30] 2025-11-26 01:03:25,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:03:30] 2025-11-26 01:03:25,711 | INFO     | traces error code: 0
[2025-11-26 02:03:30] 2025-11-26 01:03:25,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:03:30] 2025-11-26 01:03:26,125 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:03:30] 2025-11-26 01:03:26,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:03:30] 2025-11-26 01:03:26,250 [wrapper] pilotpid: 5298
[2025-11-26 02:03:30] 2025-11-26 01:03:26,353 [wrapper] Pilot exit status: 0
[2025-11-26 02:03:30] 2025-11-26 01:03:26,656 [wrapper] pandaids: 6894267737
[2025-11-26 02:03:30] 2025-11-26 01:03:27,572 [wrapper] cleanup supervisor_pilot 25269 5299
[2025-11-26 02:03:30] 2025-11-26 01:03:27,613 [wrapper] Test setup, not cleaning
[2025-11-26 02:03:30] 2025-11-26 01:03:27,666 [wrapper] apfmon messages muted
[2025-11-26 02:03:30] 2025-11-26 01:03:27,728 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:03:30] 2025-11-26 01:03:27,784 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:03:30]  *** Error codes and diagnostics ***
[2025-11-26 02:03:30]     "exeErrorCode": 0,
[2025-11-26 02:03:30]     "exeErrorDiag": "",
[2025-11-26 02:03:30]     "pilotErrorCode": 0,
[2025-11-26 02:03:30]     "pilotErrorDiag": "",
[2025-11-26 02:03:30]  *** Listing of results directory ***
[2025-11-26 02:03:30] total 1320812
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-26 02:03:30] -rwx------. 1 boinc boinc     36292 Nov 21 06:32 runpilot2-wrapper.sh
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc      5112 Nov 21 06:32 queuedata.json
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:03:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:07 run_atlas
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:07 job.xml
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc 409560912 Nov 25 01:07 EVNT.47493127._002250.pool.root.1
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc    590101 Nov 25 01:07 input.tar.gz
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc      6392 Nov 25 01:07 init_data.xml
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:07 start_atlas.sh
[2025-11-26 02:03:30] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:07 shared
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:07 boinc_lockfile
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc      2786 Nov 25 01:07 pandaJob.out
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc    991801 Nov 25 01:11 agis_schedconf.cvmfs.json
[2025-11-26 02:03:30] drwx------. 5 boinc boinc      4096 Nov 25 01:11 pilot3
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:36 boinc_task_state.xml
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc 910212862 Nov 26 01:59 HITS.47533967._002216.pool.root.1
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc      1031 Nov 26 02:00 memory_monitor_summary.json
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc   1516240 Nov 26 02:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc   2529277 Nov 26 02:00 log.47533967._002216.job.log.tgz.1
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc        95 Nov 26 02:02 pilot_heartbeat.json
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc      7953 Nov 26 02:02 heartbeat.json
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:03 boinc_mmap_file
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:03 wrapper_checkpoint.txt
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc      4883 Nov 26 02:03 pilotlog.txt
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc  11887908 Nov 26 02:03 log.47533967._002216.job.log.1
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc       353 Nov 26 02:03 output.list
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:03 runtime_log
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc  14438400 Nov 26 02:03 result.tar.gz
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc      8817 Nov 26 02:03 runtime_log.err
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc       662 Nov 26 02:03 kwaLDmbwYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmK7IKDm8Sxyqm.diag
[2025-11-26 02:03:30] -rw-r--r--. 1 boinc boinc     21496 Nov 26 02:03 stderr.txt
[2025-11-26 02:03:30] HITS file was successfully produced:
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc 910212862 Nov 26 01:59 shared/HITS.pool.root.1
[2025-11-26 02:03:30]  *** Contents of shared directory: ***
[2025-11-26 02:03:30] total 1303540
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc 409560912 Nov 25 01:07 ATLAS.root_0
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc    590101 Nov 25 01:07 input.tar.gz
[2025-11-26 02:03:30] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:07 start_atlas.sh
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc 910212862 Nov 26 01:59 HITS.pool.root.1
[2025-11-26 02:03:30] -rw-------. 1 boinc boinc  14438400 Nov 26 02:03 result.tar.gz
02:03:32 (1539): run_atlas exited; CPU time 336429.014600
02:03:32 (1539): called boinc_finish(0)

</stderr_txt>
]]>

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