Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:29:05 (5389): wrapper (7.7.26015): starting
01:29:05 (5389): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:29:05] Arguments: --nthreads 8
[2025-11-25 01:29:05] Threads: 8
[2025-11-25 01:29:05] Checking for CVMFS
[2025-11-25 01:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:29:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:29:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:29:08] 2.11.2.0 13026 283175 138496 153264 0 84 25034823 25165825 1027 130560 10 137931210 99.882 79447016 3126 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:29:08] CVMFS is ok
[2025-11-25 01:29:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:29:08] Checking for apptainer binary...
[2025-11-25 01:29:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:29:08] Running /usr/bin/apptainer --version
[2025-11-25 01:29:08] apptainer version 1.3.2-1.el7
[2025-11-25 01:29:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:29:27] cg-vwn329.simple-grid.lan
[2025-11-25 01:29:27] apptainer works
[2025-11-25 01:29:27] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:29:27] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:29:27] Starting ATLAS job with PandaID=6894293541
[2025-11-25 01:29:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:29:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:29:34] 2025-11-26 00:28:30,197 | WARNING  | process 15604 can no longer be monitored (due to stat problems) - aborting
[2025-11-26 01:29:34] 2025-11-26 00:28:30,198 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6894293541/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:29:34] 2025-11-26 00:28:30,327 | INFO     | number of running child processes to parent process 15604: 1
[2025-11-26 01:29:34] 2025-11-26 00:28:30,327 | INFO     | maximum number of monitored processes: 16
[2025-11-26 01:29:34] 2025-11-26 00:28:31,164 | INFO     | time since job start (86073s) is within the limit (172800.0s)
[2025-11-26 01:29:34] 2025-11-26 00:28:32,834 | INFO     | monitor loop #5768: job 0:6894293541 is in state 'finished'
[2025-11-26 01:29:34] 2025-11-26 00:28:32,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:29:34] 2025-11-26 00:28:33,175 | INFO     | time since job start (86075s) is within the limit (172800.0s)
[2025-11-26 01:29:34] 2025-11-26 00:28:33,176 | INFO     | 86089s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 01:29:34] 2025-11-26 00:28:35,182 | INFO     | time since job start (86077s) is within the limit (172800.0s)
[2025-11-26 01:29:34] 2025-11-26 00:28:35,339 | INFO     | monitor loop #5769: job 0:6894293541 is in state 'finished'
[2025-11-26 01:29:34] 2025-11-26 00:28:35,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:29:34] 2025-11-26 00:28:37,191 | INFO     | time since job start (86079s) is within the limit (172800.0s)
[2025-11-26 01:29:34] 2025-11-26 00:28:37,844 | INFO     | monitor loop #5770: job 0:6894293541 is in state 'finished'
[2025-11-26 01:29:34] 2025-11-26 00:28:37,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,652 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 01:29:34] 2025-11-26 00:28:38,653 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 01:29:34] 2025-11-26 00:28:38,655 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6894293541/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,656 | INFO     | extracted standard info from prmon json
[2025-11-26 01:29:34] 2025-11-26 00:28:38,656 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:29:34] 2025-11-26 00:28:38,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:29:34] 2025-11-26 00:28:38,684 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:29:34] 2025-11-26 00:28:38,687 | INFO     | sum of square deviations: 854525073247.6521
[2025-11-26 01:29:34] 2025-11-26 00:28:38,742 | INFO     | sum of deviations: 4882846810108.706
[2025-11-26 01:29:34] 2025-11-26 00:28:38,743 | INFO     | mean x: 1764074168.6904423
[2025-11-26 01:29:34] 2025-11-26 00:28:38,743 | INFO     | mean y: 2844987.828815977
[2025-11-26 01:29:34] 2025-11-26 00:28:38,743 | INFO     | intersect: -10077261725.30555
[2025-11-26 01:29:34] 2025-11-26 00:28:38,745 | INFO     | chi2: 22.12536144980851
[2025-11-26 01:29:34] 2025-11-26 00:28:38,747 | INFO     | sum of square deviations: 845415634733.0409
[2025-11-26 01:29:34] 2025-11-26 00:28:38,814 | INFO     | sum of deviations: 5344972172897.441
[2025-11-26 01:29:34] 2025-11-26 00:28:38,814 | INFO     | mean x: 1764074016.1947029
[2025-11-26 01:29:34] 2025-11-26 00:28:38,814 | INFO     | mean y: 2852723.0057265568
[2025-11-26 01:29:34] 2025-11-26 00:28:38,815 | INFO     | intersect: -11150154318.873165
[2025-11-26 01:29:34] 2025-11-26 00:28:38,816 | INFO     | chi2: 19.096811503796886
[2025-11-26 01:29:34] 2025-11-26 00:28:38,816 | INFO     | current chi2=19.096811503796886 (change=13.688137718707571 %)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,817 | INFO     | right removable region: 1396
[2025-11-26 01:29:34] 2025-11-26 00:28:38,819 | INFO     | sum of square deviations: 845414616643.0408
[2025-11-26 01:29:34] 2025-11-26 00:28:38,889 | INFO     | sum of deviations: 4289634181533.4062
[2025-11-26 01:29:34] 2025-11-26 00:28:38,889 | INFO     | mean x: 1764074321.1947029
[2025-11-26 01:29:34] 2025-11-26 00:28:38,889 | INFO     | mean y: 2854917.4065855406
[2025-11-26 01:29:34] 2025-11-26 00:28:38,889 | INFO     | intersect: -8948059057.809494
[2025-11-26 01:29:34] 2025-11-26 00:28:38,891 | INFO     | chi2: 17.13944274605652
[2025-11-26 01:29:34] 2025-11-26 00:28:38,891 | INFO     | current chi2=17.13944274605652 (change=22.534857634134337 %)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,892 | INFO     | left removable region: 10
[2025-11-26 01:29:34] 2025-11-26 00:28:38,894 | INFO     | sum of square deviations: 825601228800.7156
[2025-11-26 01:29:34] 2025-11-26 00:28:38,953 | INFO     | sum of deviations: 4312775204190.459
[2025-11-26 01:29:34] 2025-11-26 00:28:38,953 | INFO     | mean x: 1764074290.7041848
[2025-11-26 01:29:34] 2025-11-26 00:28:38,953 | INFO     | mean y: 2873875.645021645
[2025-11-26 01:29:34] 2025-11-26 00:28:38,953 | INFO     | intersect: -9212296346.849062
[2025-11-26 01:29:34] 2025-11-26 00:28:38,955 | INFO     | chi2: 9.105423540083583
[2025-11-26 01:29:34] 2025-11-26 00:28:38,955 | INFO     | current memory leak: 5.22 B/s (using 1386 data points, chi2=9.11)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,957 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 01:29:34] 2025-11-26 00:28:38,957 | INFO     | ..............................
[2025-11-26 01:29:34] 2025-11-26 00:28:38,957 | INFO     | . Timing measurements:
[2025-11-26 01:29:34] 2025-11-26 00:28:38,957 | INFO     | . get job = 0 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,957 | INFO     | . initial setup = 14 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | . payload setup = 193 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | . stage-in = 0 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | . payload execution = 85640 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | . stage-out = 3 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | . log creation = 1 s
[2025-11-26 01:29:34] 2025-11-26 00:28:38,958 | INFO     | ..............................
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | 
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | job summary report
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | --------------------------------------------------
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | PanDA job id: 6894293541
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | task id: 47533967
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | errors: (none)
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:29:34] 2025-11-26 00:28:39,097 | INFO     | pilot state: finished 
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | transexitcode: 0
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | exeerrorcode: 0
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | exeerrordiag: 
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | exitcode: 0
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | exitmsg: OK
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | cpuconsumptiontime: 332847 s
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | nevents: 1000
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | neventsw: 0
[2025-11-26 01:29:34] 2025-11-26 00:28:39,098 | INFO     | pid: 15604
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | pgrp: 15604
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | corecount: 8
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | event service: False
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | sizes: {0: 2284032, 1: 2284287, 2: 2284287, 12: 2284315, 23: 2284343, 34: 2284371, 44: 2284527, 55: 2284555, 66: 2284583, 77: 2284611, 87: 2284667, 98: 2284975, 10
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | --------------------------------------------------
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | 
[2025-11-26 01:29:34] 2025-11-26 00:28:39,099 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-26 01:29:34] 2025-11-26 00:28:39,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | job 6894293541 has completed (purged errors)
[2025-11-26 01:29:34] 2025-11-26 00:28:39,146 | INFO     | overall cleanup function is called
[2025-11-26 01:29:34] 2025-11-26 00:28:40,165 | INFO     | --- collectZombieJob: --- 10, [15604]
[2025-11-26 01:29:34] 2025-11-26 00:28:40,165 | INFO     | zombie collector waiting for pid 15604
[2025-11-26 01:29:34] 2025-11-26 00:28:40,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:29:34] 2025-11-26 00:28:40,165 | INFO     | collected zombie processes
[2025-11-26 01:29:34] 2025-11-26 00:28:40,165 | INFO     | will attempt to kill all subprocesses of pid=15604
[2025-11-26 01:29:34] 2025-11-26 00:28:40,273 | INFO     | process IDs to be killed: [15604] (in reverse order)
[2025-11-26 01:29:34] 2025-11-26 00:28:40,331 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:29:34] 2025-11-26 00:28:40,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:29:34] 2025-11-26 00:28:40,335 | INFO     | did not find any defunct processes belonging to 15604
[2025-11-26 01:29:34] 2025-11-26 00:28:40,339 | INFO     | did not find any defunct processes belonging to 15604
[2025-11-26 01:29:34] 2025-11-26 00:28:40,341 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:29:34] 2025-11-26 00:28:40,341 | INFO     | ready for new job
[2025-11-26 01:29:34] 2025-11-26 00:28:40,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:29:34] 2025-11-26 00:28:40,347 | INFO     | ***************************************
[2025-11-26 01:29:34] 2025-11-26 00:28:40,347 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:29:34] 2025-11-26 00:28:40,347 | INFO     | ***************************************
[2025-11-26 01:29:34] 2025-11-26 00:28:40,348 | INFO     | 
[2025-11-26 01:29:34] 2025-11-26 00:28:40,348 | INFO     | pilot is running in a VM
[2025-11-26 01:29:34] 2025-11-26 00:28:40,348 | INFO     | architecture information:
[2025-11-26 01:29:34] 2025-11-26 00:28:40,349 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:29:34] 2025-11-26 00:28:40,435 | INFO     | cat /etc/os-release:
[2025-11-26 01:29:34] NAME="CentOS Linux"
[2025-11-26 01:29:34] VERSION="7 (Core)"
[2025-11-26 01:29:34] ID="centos"
[2025-11-26 01:29:34] ID_LIKE="rhel fedora"
[2025-11-26 01:29:34] VERSION_ID="7"
[2025-11-26 01:29:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:29:34] ANSI_COLOR="0;31"
[2025-11-26 01:29:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:29:34] HOME_URL="https://www.centos.org/"
[2025-11-26 01:29:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:29:34] 
[2025-11-26 01:29:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:29:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:29:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:29:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:29:34] 
[2025-11-26 01:29:34] 2025-11-26 00:28:40,435 | INFO     | ***************************************
[2025-11-26 01:29:34] 2025-11-26 00:28:40,939 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-26 01:29:34] 2025-11-26 00:28:40,970 | INFO     | sufficient remaining disk space (495964913664 B)
[2025-11-26 01:29:34] 2025-11-26 00:28:40,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:29:34] 2025-11-26 00:28:40,971 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:29:34] 2025-11-26 00:28:40,971 | INFO     | update_server=False
[2025-11-26 01:29:34] 2025-11-26 00:28:40,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:29:34] 2025-11-26 00:28:40,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:29:34] 2025-11-26 00:28:40,988 | INFO     | all job control threads have been joined
[2025-11-26 01:29:34] 2025-11-26 00:28:41,075 | INFO     | all data control threads have been joined
[2025-11-26 01:29:34] 2025-11-26 00:28:41,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:29:34] 2025-11-26 00:28:41,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:29:34] 2025-11-26 00:28:41,375 | INFO     | aborting loop
[2025-11-26 01:29:34] 2025-11-26 00:28:41,771 | INFO     | all payload control threads have been joined
[2025-11-26 01:29:34] 2025-11-26 00:28:41,976 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:41,978 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:41,993 | INFO     | [job] control thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:42,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:42,081 | INFO     | [data] control thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:42,284 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:42,382 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:42,776 | INFO     | [payload] control thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,092 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,098 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,307 | INFO     | [job] validate thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,307 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,353 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:43,359 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:44,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:29:34] 2025-11-26 00:28:48,382 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:28:51,477 | INFO     | job.realtimelogging is not enabled
[2025-11-26 01:29:34] 2025-11-26 00:28:52,483 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:29:34] 2025-11-26 00:29:10,410 | INFO     | PID=9111 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 01:29:34] 2025-11-26 00:29:10,410 | INFO     | .. there are 9 such processes running
[2025-11-26 01:29:34] 2025-11-26 00:29:10,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:29:34] 2025-11-26 00:29:10,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:29:34] 2025-11-26 00:29:10,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:29:34] 2025-11-26 00:29:27,934 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:29:34] 2025-11-26 00:29:28,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139877664335680)>', '<ExcThread(monitor, started 139877437417216)>']
[2025-11-26 01:29:34] 2025-11-26 00:29:28,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:29:34] 2025-11-26 00:29:28,498 | INFO     | [monitor] control thread has ended
[2025-11-26 01:29:34] 2025-11-26 00:29:33,235 | INFO     | all workflow threads have been joined
[2025-11-26 01:29:34] 2025-11-26 00:29:33,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:29:34] 2025-11-26 00:29:33,235 | INFO     | traces error code: 0
[2025-11-26 01:29:34] 2025-11-26 00:29:33,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:29:34] 2025-11-26 00:29:33,450 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:29:34] 2025-11-26 00:29:33,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:29:34] 2025-11-26 00:29:33,477 [wrapper] pilotpid: 9111
[2025-11-26 01:29:34] 2025-11-26 00:29:33,487 [wrapper] Pilot exit status: 0
[2025-11-26 01:29:34] 2025-11-26 00:29:33,552 [wrapper] pandaids: 6894293541
[2025-11-26 01:29:34] 2025-11-26 00:29:33,745 [wrapper] cleanup supervisor_pilot 12800 9112
[2025-11-26 01:29:34] 2025-11-26 00:29:33,771 [wrapper] Test setup, not cleaning
[2025-11-26 01:29:34] 2025-11-26 00:29:33,774 [wrapper] apfmon messages muted
[2025-11-26 01:29:34] 2025-11-26 00:29:33,778 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:29:34] 2025-11-26 00:29:33,781 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:29:34]  *** Error codes and diagnostics ***
[2025-11-26 01:29:34]     "exeErrorCode": 0,
[2025-11-26 01:29:34]     "exeErrorDiag": "",
[2025-11-26 01:29:34]     "pilotErrorCode": 0,
[2025-11-26 01:29:34]     "pilotErrorDiag": "",
[2025-11-26 01:29:34]  *** Listing of results directory ***
[2025-11-26 01:29:34] total 1320812
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc    576529 Nov 21 13:50 pilot3.tar.gz
[2025-11-26 01:29:34] -rwx------. 1 boinc boinc     36292 Nov 21 13:56 runpilot2-wrapper.sh
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc      5112 Nov 21 13:56 queuedata.json
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:29:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:29 run_atlas
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:29 job.xml
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc      6391 Nov 25 01:29 init_data.xml
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc 409470210 Nov 25 01:29 EVNT.47493127._002462.pool.root.1
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:29 start_atlas.sh
[2025-11-26 01:29:34] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:29 shared
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc    590102 Nov 25 01:29 input.tar.gz
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:29 boinc_lockfile
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:29 pandaJob.out
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc    991801 Nov 25 01:33 agis_schedconf.cvmfs.json
[2025-11-26 01:29:34] drwx------. 5 boinc boinc      4096 Nov 25 01:33 pilot3
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:16 boinc_task_state.xml
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc 911218788 Nov 26 01:27 HITS.47533967._004340.pool.root.1
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc      1031 Nov 26 01:28 memory_monitor_summary.json
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc   1516240 Nov 26 01:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc   2484621 Nov 26 01:28 log.47533967._004340.job.log.tgz.1
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc      7946 Nov 26 01:28 heartbeat.json
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc        95 Nov 26 01:29 pilot_heartbeat.json
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc      8192 Nov 26 01:29 boinc_mmap_file
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc        29 Nov 26 01:29 wrapper_checkpoint.txt
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc      4955 Nov 26 01:29 pilotlog.txt
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc  11473516 Nov 26 01:29 log.47533967._004340.job.log.1
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc       353 Nov 26 01:29 output.list
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc       620 Nov 26 01:29 runtime_log
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc  13977600 Nov 26 01:29 result.tar.gz
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc      8817 Nov 26 01:29 runtime_log.err
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc       662 Nov 26 01:29 ooiLDmdrfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpRJKDmbetrmm.diag
[2025-11-26 01:29:34] -rw-r--r--. 1 boinc boinc     21429 Nov 26 01:29 stderr.txt
[2025-11-26 01:29:34] HITS file was successfully produced:
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc 911218788 Nov 26 01:27 shared/HITS.pool.root.1
[2025-11-26 01:29:34]  *** Contents of shared directory: ***
[2025-11-26 01:29:34] total 1303988
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc 409470210 Nov 25 01:29 ATLAS.root_0
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:29 start_atlas.sh
[2025-11-26 01:29:34] -rw-r--r--. 2 boinc boinc    590102 Nov 25 01:29 input.tar.gz
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc 911218788 Nov 26 01:27 HITS.pool.root.1
[2025-11-26 01:29:34] -rw-------. 1 boinc boinc  13977600 Nov 26 01:29 result.tar.gz
01:29:35 (5389): run_atlas exited; CPU time 333327.226227
01:29:35 (5389): called boinc_finish(0)

</stderr_txt>
]]>

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