Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:18 (3106618): wrapper (7.7.26015): starting
00:51:18 (3106618): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:51:18] Arguments: --nthreads 8
[2025-11-22 00:51:18] Threads: 8
[2025-11-22 00:51:18] Checking for CVMFS
[2025-11-22 00:51:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:51:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:51:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:51:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:51:19] 2.11.3.0 2884895 22407 220860 153165 0 439 35543634 45568001 10126 130560 0 143092221 99.773 91974242 18529 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-22 00:51:19] CVMFS is ok
[2025-11-22 00:51:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:51:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:51:19] Further information can be found at the LHC@home message board.
[2025-11-22 00:51:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:51:19] Checking for apptainer binary...
[2025-11-22 00:51:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:51:19] Running /usr/bin/apptainer --version
[2025-11-22 00:51:19] apptainer version 1.4.1-1.el9
[2025-11-22 00:51:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:51:19] wns0017.triumf.lcg
[2025-11-22 00:51:19] apptainer works
[2025-11-22 00:51:19] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:51:19] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:51:19] Starting ATLAS job with PandaID=6895331141
[2025-11-22 00:51:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:55:59]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | wrong length of table data, x=[1763801530.0, 1763801591.0], y=[1186.0, 687177.0] (must be same and length>=4)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . Timing measurements:
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . get job = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . initial setup = 3 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . payload setup = 10 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . payload execution = 76 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . log creation = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331141/pilotlog.txt
[2025-11-22 00:55:59] 2025-11-22 08:55:27,718 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 00:55:59] - Log from pilotlog.txt -
[2025-11-22 00:55:59] 2025-11-22 08:55:27,704 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331141/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | INFO     | extracted standard info from prmon json
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | wrong length of table data, x=[1763801530.0, 1763801591.0], y=[1186.0, 687177.0] (must be same and length>=4)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . Timing measurements:
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . get job = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . initial setup = 3 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . payload setup = 10 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . payload execution = 76 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . log creation = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331141/pilotlog.txt
[2025-11-22 00:55:59] 2025-11-22 08:55:27,718 | WARNING  | 
[2025-11-22 00:55:59] [begin log extracts]
[2025-11-22 00:55:59] - Log from pilotlog.txt -
[2025-11-22 00:55:59] 2025-11-22 08:55:27,704 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331141/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | INFO     | extracted standard info from prmon json
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:55:59] 2025-11-22 08:55:27,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:59] 2025-11-22 08:55:27,706 | WARNING  | wrong length of table data, x=[1763801530.0, 1763801591.0], y=[1186.0, 687177.0] (must be same and length>=4)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . Timing measurements:
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . get job = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . initial setup = 3 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,707 | INFO     | . payload setup = 10 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . payload execution = 76 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | . log creation = 0 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | ..............................
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:59] 2025-11-22 08:55:27,708 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331141/pilotlog.txt
[2025-11-22 00:55:59] [end log extracts]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,718 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,719 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 00:55:59] 2025-11-22 08:55:27,816 | INFO     | 
[2025-11-22 00:55:59] 2025-11-22 08:55:27,816 | INFO     | job summary report
[2025-11-22 00:55:59] 2025-11-22 08:55:27,816 | INFO     | --------------------------------------------------
[2025-11-22 00:55:59] 2025-11-22 08:55:27,816 | INFO     | PanDA job id: 6895331141
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | task id: 47556137
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 00:53:16,523 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | pilot state: failed 
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | transexitcode: 65
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | exeerrorcode: 65
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | exitcode: 65
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | cpuconsumptiontime: 49 s
[2025-11-22 00:55:59] 2025-11-22 08:55:27,817 | INFO     | nevents: 0
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | neventsw: 0
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | pid: 3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | pgrp: 3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | corecount: 8
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | event service: False
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | sizes: {0: 2298803, 6: 2299065, 11: 2299093, 90: 2324485, 92: 2328775, 93: 2328803, 215: 2329097}
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | --------------------------------------------------
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | 
[2025-11-22 00:55:59] 2025-11-22 08:55:27,818 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,848 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,850 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:55:59] 2025-11-22 08:55:27,850 | INFO     | job 6895331141 has completed (purged errors)
[2025-11-22 00:55:59] 2025-11-22 08:55:27,850 | INFO     | overall cleanup function is called
[2025-11-22 00:55:59] 2025-11-22 08:55:28,860 | INFO     | --- collectZombieJob: --- 10, [3116870]
[2025-11-22 00:55:59] 2025-11-22 08:55:28,860 | INFO     | zombie collector waiting for pid 3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:28,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:55:59] 2025-11-22 08:55:28,860 | INFO     | collected zombie processes
[2025-11-22 00:55:59] 2025-11-22 08:55:28,860 | INFO     | will attempt to kill all subprocesses of pid=3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:29,056 | INFO     | process IDs to be killed: [3116870] (in reverse order)
[2025-11-22 00:55:59] 2025-11-22 08:55:29,119 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:55:59] 2025-11-22 08:55:29,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:55:59] 2025-11-22 08:55:29,128 | INFO     | did not find any defunct processes belonging to 3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:29,135 | INFO     | did not find any defunct processes belonging to 3116870
[2025-11-22 00:55:59] 2025-11-22 08:55:29,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:55:59] 2025-11-22 08:55:29,137 | INFO     | ready for new job
[2025-11-22 00:55:59] 2025-11-22 08:55:29,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:55:59] 2025-11-22 08:55:29,139 | INFO     | ***************************************
[2025-11-22 00:55:59] 2025-11-22 08:55:29,139 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:55:59] 2025-11-22 08:55:29,140 | INFO     | ***************************************
[2025-11-22 00:55:59] 2025-11-22 08:55:29,140 | INFO     | 
[2025-11-22 00:55:59] 2025-11-22 08:55:29,141 | INFO     | architecture information:
[2025-11-22 00:55:59] 2025-11-22 08:55:29,142 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:55:59] 2025-11-22 08:55:29,154 | INFO     | cat /etc/os-release:
[2025-11-22 00:55:59] NAME="CentOS Linux"
[2025-11-22 00:55:59] VERSION="7 (Core)"
[2025-11-22 00:55:59] ID="centos"
[2025-11-22 00:55:59] ID_LIKE="rhel fedora"
[2025-11-22 00:55:59] VERSION_ID="7"
[2025-11-22 00:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:55:59] ANSI_COLOR="0;31"
[2025-11-22 00:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:55:59] HOME_URL="https://www.centos.org/"
[2025-11-22 00:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:55:59] 
[2025-11-22 00:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:55:59] 
[2025-11-22 00:55:59] 2025-11-22 08:55:29,154 | INFO     | ***************************************
[2025-11-22 00:55:59] 2025-11-22 08:55:29,658 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 00:55:59] 2025-11-22 08:55:29,685 | INFO     | sufficient remaining disk space (1165416726528 B)
[2025-11-22 00:55:59] 2025-11-22 08:55:29,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:55:59] 2025-11-22 08:55:29,686 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:55:59] 2025-11-22 08:55:29,686 | INFO     | update_server=False
[2025-11-22 00:55:59] 2025-11-22 08:55:29,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:55:59] 2025-11-22 08:55:29,691 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:55:59] 2025-11-22 08:55:29,691 | INFO     | aborting loop
[2025-11-22 00:55:59] 2025-11-22 08:55:29,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:55:59] 2025-11-22 08:55:29,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:55:59] 2025-11-22 08:55:30,088 | INFO     | all data control threads have been joined
[2025-11-22 00:55:59] 2025-11-22 08:55:30,692 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,697 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,697 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,759 | INFO     | all payload control threads have been joined
[2025-11-22 00:55:59] 2025-11-22 08:55:30,796 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:55:59] 2025-11-22 08:55:30,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,838 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:30,950 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:31,095 | INFO     | [data] control thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:31,097 | INFO     | all job control threads have been joined
[2025-11-22 00:55:59] 2025-11-22 08:55:31,463 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:31,763 | INFO     | [payload] control thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:31,850 | INFO     | [job] validate thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:31,996 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:32,084 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:32,103 | INFO     | [job] control thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:32,804 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:33,703 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:55:59] 2025-11-22 08:55:35,777 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:55:59] 2025-11-22 08:55:37,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642266933056)>', '<ExcThread(monitor, started 139640996624128)>']
[2025-11-22 00:55:59] 2025-11-22 08:55:42,738 | INFO     | all workflow threads have been joined
[2025-11-22 00:55:59] 2025-11-22 08:55:42,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:55:59] 2025-11-22 08:55:42,739 | INFO     | traces error code: 0
[2025-11-22 00:55:59] 2025-11-22 08:55:42,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:55:59] 2025-11-22 08:55:59,087 | INFO     | PID=3110281 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:55:59] 2025-11-22 08:55:59,087 | INFO     | .. there are 19 such processes running
[2025-11-22 00:55:59] 2025-11-22 08:55:59,093 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:55:59] 2025-11-22 08:55:59,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:55:59] 2025-11-22 08:55:59,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:55:59] 2025-11-22 08:55:59,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:55:59] 2025-11-22 08:55:59,094 | INFO     | [monitor] control thread has ended
[2025-11-22 00:55:59] 2025-11-22 08:55:59,231 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:55:59] 2025-11-22 08:55:59,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:55:59] 2025-11-22 08:55:59,235 [wrapper] pilotpid: 3110281
[2025-11-22 00:55:59] 2025-11-22 08:55:59,237 [wrapper] Pilot exit status: 0
[2025-11-22 00:55:59] 2025-11-22 08:55:59,247 [wrapper] pandaids: 6895331141
[2025-11-22 00:55:59] 2025-11-22 08:55:59,278 [wrapper] cleanup supervisor_pilot 3110287 3110282
[2025-11-22 00:55:59] 2025-11-22 08:55:59,281 [wrapper] Test setup, not cleaning
[2025-11-22 00:55:59] 2025-11-22 08:55:59,284 [wrapper] apfmon messages muted
[2025-11-22 00:55:59] 2025-11-22 08:55:59,285 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:55:59] 2025-11-22 08:55:59,287 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:55:59]  *** Error codes and diagnostics ***
[2025-11-22 00:55:59]     "exeErrorCode": 65,
[2025-11-22 00:55:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 00:55:59]     "pilotErrorCode": 1305,
[2025-11-22 00:55:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 00:55:59]  *** Listing of results directory ***
[2025-11-22 00:55:59] total 403688
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc    576529 Nov 21 14:39 pilot3.tar.gz
[2025-11-22 00:55:59] -rwx------. 1 boinc boinc     36292 Nov 21 14:42 runpilot2-wrapper.sh
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc      5112 Nov 21 14:42 queuedata.json
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc       100 Nov 22 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:55:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 00:51 run_atlas
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc       105 Nov 22 00:51 job.xml
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc      6445 Nov 22 00:51 init_data.xml
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc 409176643 Nov 22 00:51 EVNT.47483658._000161.pool.root.1
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc     15847 Nov 22 00:51 start_atlas.sh
[2025-11-22 00:55:59] drwxrwx--x. 2 boinc boinc      4096 Nov 22 00:51 shared
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc    590096 Nov 22 00:51 input.tar.gz
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc         0 Nov 22 00:51 boinc_lockfile
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc      2785 Nov 22 00:51 pandaJob.out
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc    989760 Nov 22 00:51 agis_schedconf.cvmfs.json
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc   1526164 Nov 22 00:51 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:55:59] drwx------. 5 boinc boinc      4096 Nov 22 00:51 pilot3
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc       524 Nov 22 00:52 boinc_task_state.xml
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc      1010 Nov 22 00:53 memory_monitor_summary.json
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc     48850 Nov 22 00:53 log.47556137._001603.job.log.tgz.1
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc     10324 Nov 22 00:55 heartbeat.json
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc      8192 Nov 22 00:55 boinc_mmap_file
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc        23 Nov 22 00:55 wrapper_checkpoint.txt
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc        95 Nov 22 00:55 pilot_heartbeat.json
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc       823 Nov 22 00:55 pilotlog.txt
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc     96552 Nov 22 00:55 log.47556137._001603.job.log.1
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc       186 Nov 22 00:55 output.list
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc       620 Nov 22 00:55 runtime_log
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc    163840 Nov 22 00:55 result.tar.gz
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc      8634 Nov 22 00:55 runtime_log.err
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc       646 Nov 22 00:55 akUKDmo0og8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlqHKDmVhr3Bo.diag
[2025-11-22 00:55:59] -rw-r--r--. 1 boinc boinc     22462 Nov 22 00:55 stderr.txt
[2025-11-22 00:55:59] No HITS result produced
[2025-11-22 00:55:59]  *** Contents of shared directory: ***
[2025-11-22 00:55:59] total 400348
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc 409176643 Nov 22 00:51 ATLAS.root_0
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc     15847 Nov 22 00:51 start_atlas.sh
[2025-11-22 00:55:59] -rw-r--r--. 2 boinc boinc    590096 Nov 22 00:51 input.tar.gz
[2025-11-22 00:55:59] -rw-------. 1 boinc boinc    163840 Nov 22 00:55 result.tar.gz
00:56:00 (3106618): run_atlas exited; CPU time 49.336627
00:56:00 (3106618): called boinc_finish(0)

</stderr_txt>
]]>

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