Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:09 (31577): wrapper (7.7.26015): starting
04:37:09 (31577): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:37:09] Arguments: --nthreads 8
[2025-11-25 04:37:09] Threads: 8
[2025-11-25 04:37:09] Checking for CVMFS
[2025-11-25 04:37:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:37:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:37:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:37:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:37:12] 2.11.2.0 19320 76793 85624 153268 2 84 25083794 25165824 4632 130560 11 25083116 99.885 15670582 1589 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 04:37:12] CVMFS is ok
[2025-11-25 04:37:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:37:12] Checking for apptainer binary...
[2025-11-25 04:37:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:37:12] Running /usr/bin/apptainer --version
[2025-11-25 04:37:12] apptainer version 1.3.2-1.el7
[2025-11-25 04:37:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:37:23] cg-vwn360.simple-grid.lan
[2025-11-25 04:37:23] apptainer works
[2025-11-25 04:37:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:37:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:37:23] Starting ATLAS job with PandaID=6894292057
[2025-11-25 04:37:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:09:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:09:18] 2025-11-26 05:08:12,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:09:18] 2025-11-26 05:08:13,184 | INFO     | time since job start (91604s) is within the limit (172800.0s)
[2025-11-26 06:09:18] 2025-11-26 05:08:14,453 | INFO     | PID=2971 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 06:09:18] 2025-11-26 05:08:14,453 | INFO     | .. there are 9 such processes running
[2025-11-26 06:09:18] 2025-11-26 05:08:14,592 | INFO     | monitor loop #6161: job 0:6894292057 is in state 'finished'
[2025-11-26 06:09:18] 2025-11-26 05:08:14,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:09:18] 2025-11-26 05:08:15,453 | INFO     | time since job start (91606s) is within the limit (172800.0s)
[2025-11-26 06:09:18] 2025-11-26 05:08:17,099 | INFO     | monitor loop #6162: job 0:6894292057 is in state 'finished'
[2025-11-26 06:09:18] 2025-11-26 05:08:17,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:09:18] 2025-11-26 05:08:17,462 | INFO     | time since job start (91608s) is within the limit (172800.0s)
[2025-11-26 06:09:18] 2025-11-26 05:08:19,469 | INFO     | time since job start (91610s) is within the limit (172800.0s)
[2025-11-26 06:09:18] 2025-11-26 05:08:19,604 | INFO     | monitor loop #6163: job 0:6894292057 is in state 'finished'
[2025-11-26 06:09:18] 2025-11-26 05:08:19,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:09:18] 2025-11-26 05:08:21,475 | INFO     | time since job start (91612s) is within the limit (172800.0s)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,109 | INFO     | monitor loop #6164: job 0:6894292057 is in state 'finished'
[2025-11-26 06:09:18] 2025-11-26 05:08:22,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,132 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:09:18] 2025-11-26 05:08:22,137 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 06:09:18] 2025-11-26 05:08:22,139 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894292057/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,140 | INFO     | extracted standard info from prmon json
[2025-11-26 06:09:18] 2025-11-26 05:08:22,140 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:09:18] 2025-11-26 05:08:22,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:09:18] 2025-11-26 05:08:22,171 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:09:18] 2025-11-26 05:08:22,173 | INFO     | sum of square deviations: 1029873561284.5326
[2025-11-26 06:09:18] 2025-11-26 05:08:22,264 | INFO     | sum of deviations: 3267446024507.8394
[2025-11-26 06:09:18] 2025-11-26 05:08:22,264 | INFO     | mean x: 1764088113.7620645
[2025-11-26 06:09:18] 2025-11-26 05:08:22,265 | INFO     | mean y: 2827810.66152815
[2025-11-26 06:09:18] 2025-11-26 05:08:22,265 | INFO     | intersect: -5594036611.22346
[2025-11-26 06:09:18] 2025-11-26 05:08:22,267 | INFO     | chi2: 29.761843832102777
[2025-11-26 06:09:18] 2025-11-26 05:08:22,269 | INFO     | sum of square deviations: 1019554816526.5413
[2025-11-26 06:09:18] 2025-11-26 05:08:22,352 | INFO     | sum of deviations: 3777183783323.1357
[2025-11-26 06:09:18] 2025-11-26 05:08:22,353 | INFO     | mean x: 1764087961.266308
[2025-11-26 06:09:18] 2025-11-26 05:08:22,353 | INFO     | mean y: 2835341.9946200405
[2025-11-26 06:09:18] 2025-11-26 05:08:22,353 | INFO     | intersect: -6532648902.345871
[2025-11-26 06:09:18] 2025-11-26 05:08:22,355 | INFO     | chi2: 26.258689896766032
[2025-11-26 06:09:18] 2025-11-26 05:08:22,355 | INFO     | current chi2=26.258689896766032 (change=11.770621320034104 %)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,355 | INFO     | right removable region: 1486
[2025-11-26 06:09:18] 2025-11-26 05:08:22,357 | INFO     | sum of square deviations: 1019553667896.5422
[2025-11-26 06:09:18] 2025-11-26 05:08:22,432 | INFO     | sum of deviations: 2639961351670.008
[2025-11-26 06:09:18] 2025-11-26 05:08:22,432 | INFO     | mean x: 1764088266.266308
[2025-11-26 06:09:18] 2025-11-26 05:08:22,433 | INFO     | mean y: 2837083.0
[2025-11-26 06:09:18] 2025-11-26 05:08:22,433 | INFO     | intersect: -4564970370.908525
[2025-11-26 06:09:18] 2025-11-26 05:08:22,435 | INFO     | chi2: 24.974815714934707
[2025-11-26 06:09:18] 2025-11-26 05:08:22,435 | INFO     | current chi2=24.974815714934707 (change=16.084447402430477 %)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,435 | INFO     | left removable region: 10
[2025-11-26 06:09:18] 2025-11-26 05:08:22,437 | INFO     | sum of square deviations: 997094410938.7715
[2025-11-26 06:09:18] 2025-11-26 05:08:22,528 | INFO     | sum of deviations: 2696935139587.492
[2025-11-26 06:09:18] 2025-11-26 05:08:22,529 | INFO     | mean x: 1764088235.7757452
[2025-11-26 06:09:18] 2025-11-26 05:08:22,529 | INFO     | mean y: 2854640.237127371
[2025-11-26 06:09:18] 2025-11-26 05:08:22,529 | INFO     | intersect: -4768640917.457523
[2025-11-26 06:09:18] 2025-11-26 05:08:22,531 | INFO     | chi2: 16.97534424713182
[2025-11-26 06:09:18] 2025-11-26 05:08:22,531 | INFO     | current memory leak: 2.70 B/s (using 1476 data points, chi2=16.98)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | ..............................
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . Timing measurements:
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . get job = 0 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . initial setup = 7 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . payload setup = 182 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . stage-in = 0 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . payload execution = 91109 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,533 | INFO     | . stage-out = 6 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,534 | INFO     | . log creation = 1 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,534 | INFO     | ..............................
[2025-11-26 06:09:18] 2025-11-26 05:08:22,662 | INFO     | 
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | job summary report
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | --------------------------------------------------
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | PanDA job id: 6894292057
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | task id: 47533967
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | errors: (none)
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | pilot state: finished 
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | transexitcode: 0
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | exeerrorcode: 0
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | exeerrordiag: 
[2025-11-26 06:09:18] 2025-11-26 05:08:22,663 | INFO     | exitcode: 0
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | exitmsg: OK
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | cpuconsumptiontime: 338509 s
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | nevents: 1000
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | neventsw: 0
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | pid: 9488
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | pgrp: 9488
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | corecount: 8
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | event service: False
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | sizes: {0: 2284032, 1: 2284287, 2: 2284315, 12: 2284315, 23: 2284343, 34: 2284371, 45: 2284527, 55: 2284555, 66: 2284583, 77: 2284611, 88: 2284667, 98: 2284975, 10
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | --------------------------------------------------
[2025-11-26 06:09:18] 2025-11-26 05:08:22,664 | INFO     | 
[2025-11-26 06:09:18] 2025-11-26 05:08:22,665 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 06:09:18] 2025-11-26 05:08:23,320 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,320 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:09:18] 2025-11-26 05:08:23,322 | INFO     | job 6894292057 has completed (purged errors)
[2025-11-26 06:09:18] 2025-11-26 05:08:23,323 | INFO     | overall cleanup function is called
[2025-11-26 06:09:18] 2025-11-26 05:08:24,342 | INFO     | --- collectZombieJob: --- 10, [9488]
[2025-11-26 06:09:18] 2025-11-26 05:08:24,343 | INFO     | zombie collector waiting for pid 9488
[2025-11-26 06:09:18] 2025-11-26 05:08:24,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:09:18] 2025-11-26 05:08:24,343 | INFO     | collected zombie processes
[2025-11-26 06:09:18] 2025-11-26 05:08:24,343 | INFO     | will attempt to kill all subprocesses of pid=9488
[2025-11-26 06:09:18] 2025-11-26 05:08:24,438 | INFO     | process IDs to be killed: [9488] (in reverse order)
[2025-11-26 06:09:18] 2025-11-26 05:08:25,208 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:09:18] 2025-11-26 05:08:25,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:09:18] 2025-11-26 05:08:25,211 | INFO     | did not find any defunct processes belonging to 9488
[2025-11-26 06:09:18] 2025-11-26 05:08:25,213 | INFO     | did not find any defunct processes belonging to 9488
[2025-11-26 06:09:18] 2025-11-26 05:08:25,278 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:09:18] 2025-11-26 05:08:25,278 | INFO     | ready for new job
[2025-11-26 06:09:18] 2025-11-26 05:08:25,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:09:18] 2025-11-26 05:08:25,284 | INFO     | ***************************************
[2025-11-26 06:09:18] 2025-11-26 05:08:25,284 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:09:18] 2025-11-26 05:08:25,284 | INFO     | ***************************************
[2025-11-26 06:09:18] 2025-11-26 05:08:25,284 | INFO     | 
[2025-11-26 06:09:18] 2025-11-26 05:08:25,285 | INFO     | pilot is running in a VM
[2025-11-26 06:09:18] 2025-11-26 05:08:25,285 | INFO     | architecture information:
[2025-11-26 06:09:18] 2025-11-26 05:08:25,298 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:09:18] 2025-11-26 05:08:25,565 | INFO     | cat /etc/os-release:
[2025-11-26 06:09:18] NAME="CentOS Linux"
[2025-11-26 06:09:18] VERSION="7 (Core)"
[2025-11-26 06:09:18] ID="centos"
[2025-11-26 06:09:18] ID_LIKE="rhel fedora"
[2025-11-26 06:09:18] VERSION_ID="7"
[2025-11-26 06:09:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:09:18] ANSI_COLOR="0;31"
[2025-11-26 06:09:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:09:18] HOME_URL="https://www.centos.org/"
[2025-11-26 06:09:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:09:18] 
[2025-11-26 06:09:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:09:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:09:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:09:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:09:18] 
[2025-11-26 06:09:18] 2025-11-26 05:08:25,565 | INFO     | ***************************************
[2025-11-26 06:09:18] 2025-11-26 05:08:26,068 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 06:09:18] 2025-11-26 05:08:26,225 | INFO     | sufficient remaining disk space (494858665984 B)
[2025-11-26 06:09:18] 2025-11-26 05:08:26,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:09:18] 2025-11-26 05:08:26,225 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:09:18] 2025-11-26 05:08:26,226 | INFO     | update_server=False
[2025-11-26 06:09:18] 2025-11-26 05:08:26,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:09:18] 2025-11-26 05:08:26,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:09:18] 2025-11-26 05:08:26,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:09:18] 2025-11-26 05:08:26,228 | INFO     | aborting loop
[2025-11-26 06:09:18] 2025-11-26 05:08:26,471 | INFO     | all job control threads have been joined
[2025-11-26 06:09:18] 2025-11-26 05:08:27,156 | INFO     | all data control threads have been joined
[2025-11-26 06:09:18] 2025-11-26 05:08:27,231 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,233 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,348 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,477 | INFO     | [job] control thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,540 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:09:18] 2025-11-26 05:08:27,718 | INFO     | all payload control threads have been joined
[2025-11-26 06:09:18] 2025-11-26 05:08:27,824 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:27,850 | INFO     | [job] validate thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,162 | INFO     | [data] control thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,233 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,531 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,657 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,662 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,682 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:28,724 | INFO     | [payload] control thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:29,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:09:18] 2025-11-26 05:08:33,348 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:09:18] 2025-11-26 05:08:54,716 | INFO     | PID=2971 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 06:09:18] 2025-11-26 05:08:54,716 | INFO     | .. there are 9 such processes running
[2025-11-26 06:09:18] 2025-11-26 05:08:54,717 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:09:18] 2025-11-26 05:08:54,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:09:18] 2025-11-26 05:08:54,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:09:18] 2025-11-26 05:09:07,758 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:09:18] 2025-11-26 05:09:08,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415359522624)>', '<ExcThread(monitor, started 140414912796416)>']
[2025-11-26 06:09:18] 2025-11-26 05:09:09,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:09:18] 2025-11-26 05:09:09,804 | INFO     | [monitor] control thread has ended
[2025-11-26 06:09:18] 2025-11-26 05:09:13,856 | INFO     | all workflow threads have been joined
[2025-11-26 06:09:18] 2025-11-26 05:09:13,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:09:18] 2025-11-26 05:09:13,857 | INFO     | traces error code: 0
[2025-11-26 06:09:18] 2025-11-26 05:09:13,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:09:18] 2025-11-26 05:09:14,099 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:09:18] 2025-11-26 05:09:14,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:09:18] 2025-11-26 05:09:14,185 [wrapper] pilotpid: 2971
[2025-11-26 06:09:18] 2025-11-26 05:09:14,249 [wrapper] Pilot exit status: 0
[2025-11-26 06:09:18] 2025-11-26 05:09:14,611 [wrapper] pandaids: 6894292057
[2025-11-26 06:09:18] 2025-11-26 05:09:15,503 [wrapper] cleanup supervisor_pilot 16484 2972
[2025-11-26 06:09:18] 2025-11-26 05:09:15,570 [wrapper] Test setup, not cleaning
[2025-11-26 06:09:18] 2025-11-26 05:09:15,663 [wrapper] apfmon messages muted
[2025-11-26 06:09:18] 2025-11-26 05:09:15,742 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:09:18] 2025-11-26 05:09:15,825 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:09:18]  *** Error codes and diagnostics ***
[2025-11-26 06:09:18]     "exeErrorCode": 0,
[2025-11-26 06:09:18]     "exeErrorDiag": "",
[2025-11-26 06:09:18]     "pilotErrorCode": 0,
[2025-11-26 06:09:18]     "pilotErrorDiag": "",
[2025-11-26 06:09:18]  *** Listing of results directory ***
[2025-11-26 06:09:18] total 1330720
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc    576529 Nov 21 13:22 pilot3.tar.gz
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc      5112 Nov 21 13:24 queuedata.json
[2025-11-26 06:09:18] -rwx------. 1 boinc boinc     36292 Nov 21 13:25 runpilot2-wrapper.sh
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc       100 Nov 25 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:09:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 04:37 run_atlas
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc       105 Nov 25 04:37 job.xml
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc      6391 Nov 25 04:37 init_data.xml
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc 410189547 Nov 25 04:37 EVNT.47493127._002448.pool.root.1
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc     15847 Nov 25 04:37 start_atlas.sh
[2025-11-26 06:09:18] drwxrwx--x. 2 boinc boinc        68 Nov 25 04:37 shared
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc    590108 Nov 25 04:37 input.tar.gz
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc         0 Nov 25 04:37 boinc_lockfile
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc      2785 Nov 25 04:37 pandaJob.out
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc    991801 Nov 25 04:41 agis_schedconf.cvmfs.json
[2025-11-26 06:09:18] drwx------. 5 boinc boinc      4096 Nov 25 04:41 pilot3
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc       533 Nov 26 05:34 boinc_task_state.xml
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc 918987019 Nov 26 06:05 HITS.47533967._004193.pool.root.1
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc      1031 Nov 26 06:06 memory_monitor_summary.json
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc   1516240 Nov 26 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc   2569921 Nov 26 06:06 log.47533967._004193.job.log.tgz.1
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc      8630 Nov 26 06:08 heartbeat.json
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc        95 Nov 26 06:08 pilot_heartbeat.json
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc      8192 Nov 26 06:09 boinc_mmap_file
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc        29 Nov 26 06:09 wrapper_checkpoint.txt
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc      4883 Nov 26 06:09 pilotlog.txt
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc  12216908 Nov 26 06:09 log.47533967._004193.job.log.1
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc       353 Nov 26 06:09 output.list
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc       620 Nov 26 06:09 runtime_log
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc  14807040 Nov 26 06:09 result.tar.gz
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc      8817 Nov 26 06:09 runtime_log.err
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc       662 Nov 26 06:09 elDODmeNfg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2bHKDmWkfLbm.diag
[2025-11-26 06:09:18] -rw-r--r--. 1 boinc boinc     21502 Nov 26 06:09 stderr.txt
[2025-11-26 06:09:18] HITS file was successfully produced:
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc 918987019 Nov 26 06:05 shared/HITS.pool.root.1
[2025-11-26 06:09:18]  *** Contents of shared directory: ***
[2025-11-26 06:09:18] total 1313084
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc 410189547 Nov 25 04:37 ATLAS.root_0
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc     15847 Nov 25 04:37 start_atlas.sh
[2025-11-26 06:09:18] -rw-r--r--. 2 boinc boinc    590108 Nov 25 04:37 input.tar.gz
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc 918987019 Nov 26 06:05 HITS.pool.root.1
[2025-11-26 06:09:18] -rw-------. 1 boinc boinc  14807040 Nov 26 06:09 result.tar.gz
06:09:19 (31577): run_atlas exited; CPU time 339086.127094
06:09:19 (31577): called boinc_finish(0)

</stderr_txt>
]]>

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