Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:48:35 (4192372): wrapper (7.7.26015): starting
00:48:35 (4192372): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:48:35] Arguments: --nthreads 8
[2025-11-22 00:48:35] Threads: 8
[2025-11-22 00:48:35] Checking for CVMFS
[2025-11-22 00:48:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:48:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:48:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:48:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:48:37] 2.11.3.0 2562703 22406 147036 153165 2 184 40081437 45568001 11457 130560 0 165682545 99.815 84318182 20140 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 00:48:37] CVMFS is ok
[2025-11-22 00:48:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:48:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:48:37] Further information can be found at the LHC@home message board.
[2025-11-22 00:48:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:48:37] Checking for apptainer binary...
[2025-11-22 00:48:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:48:37] Running /usr/bin/apptainer --version
[2025-11-22 00:48:37] apptainer version 1.4.1-1.el9
[2025-11-22 00:48:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:48:38] wns0015.triumf.lcg
[2025-11-22 00:48:38] apptainer works
[2025-11-22 00:48:38] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:48:38] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:48:38] Starting ATLAS job with PandaID=6895331134
[2025-11-22 00:48:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:55:34]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:55:34] 2025-11-22 08:55:01,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | WARNING  | wrong length of table data, x=[1763801435.0, 1763801496.0, 1763801557.0], y=[26538.0, 370602.0, 805686.0] (must be same and length>=4)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | . Timing measurements:
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . get job = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . initial setup = 6 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload setup = 22 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload execution = 154 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . log creation = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331134/pilotlog.txt
[2025-11-22 00:55:34] 2025-11-22 08:55:01,415 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 00:55:34] - Log from pilotlog.txt -
[2025-11-22 00:55:34] 2025-11-22 08:55:01,388 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331134/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | INFO     | extracted standard info from prmon json
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:55:34] 2025-11-22 08:55:01,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 00:55:34] 2025-11-22 08:55:01,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | WARNING  | wrong length of table data, x=[1763801435.0, 1763801496.0, 1763801557.0], y=[26538.0, 370602.0, 805686.0] (must be same and length>=4)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | . Timing measurements:
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . get job = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . initial setup = 6 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload setup = 22 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload execution = 154 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . log creation = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331134/pilotlog.txt
[2025-11-22 00:55:34] 2025-11-22 08:55:01,415 | WARNING  | 
[2025-11-22 00:55:34] [begin log extracts]
[2025-11-22 00:55:34] - Log from pilotlog.txt -
[2025-11-22 00:55:34] 2025-11-22 08:55:01,388 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895331134/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | INFO     | extracted standard info from prmon json
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:55:34] 2025-11-22 08:55:01,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:55:34] 2025-11-22 08:55:01,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 00:55:34] 2025-11-22 08:55:01,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | WARNING  | wrong length of table data, x=[1763801435.0, 1763801496.0, 1763801557.0], y=[26538.0, 370602.0, 805686.0] (must be same and length>=4)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,394 | INFO     | . Timing measurements:
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . get job = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . initial setup = 6 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload setup = 22 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-in = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . payload execution = 154 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . stage-out = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | . log creation = 0 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | ..............................
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 00:55:34] 2025-11-22 08:55:01,395 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895331134/pilotlog.txt
[2025-11-22 00:55:34] [end log extracts]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,415 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,416 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | 
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | job summary report
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | --------------------------------------------------
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | PanDA job id: 6895331134
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | task id: 47556137
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 00:52:45,592 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | pilot state: failed 
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | transexitcode: 65
[2025-11-22 00:55:34] 2025-11-22 08:55:01,486 | INFO     | exeerrorcode: 65
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | exitcode: 65
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | cpuconsumptiontime: 53 s
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | nevents: 0
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | neventsw: 0
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | pid: 11180
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | pgrp: 11180
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | corecount: 8
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | event service: False
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | sizes: {0: 2298576, 1: 2298831, 12: 2298831, 20: 2299121, 23: 2299149, 181: 2324695, 182: 2328985, 185: 2329041, 309: 2329235}
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | --------------------------------------------------
[2025-11-22 00:55:34] 2025-11-22 08:55:01,487 | INFO     | 
[2025-11-22 00:55:34] 2025-11-22 08:55:01,488 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 00:55:34] 2025-11-22 08:55:01,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | job 6895331134 has completed (purged errors)
[2025-11-22 00:55:34] 2025-11-22 08:55:01,505 | INFO     | overall cleanup function is called
[2025-11-22 00:55:34] 2025-11-22 08:55:02,513 | INFO     | --- collectZombieJob: --- 10, [11180]
[2025-11-22 00:55:34] 2025-11-22 08:55:02,513 | INFO     | zombie collector waiting for pid 11180
[2025-11-22 00:55:34] 2025-11-22 08:55:02,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:55:34] 2025-11-22 08:55:02,513 | INFO     | collected zombie processes
[2025-11-22 00:55:34] 2025-11-22 08:55:02,514 | INFO     | will attempt to kill all subprocesses of pid=11180
[2025-11-22 00:55:34] 2025-11-22 08:55:02,686 | INFO     | process IDs to be killed: [11180] (in reverse order)
[2025-11-22 00:55:34] 2025-11-22 08:55:02,751 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:55:34] 2025-11-22 08:55:02,752 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:55:34] 2025-11-22 08:55:02,768 | INFO     | did not find any defunct processes belonging to 11180
[2025-11-22 00:55:34] 2025-11-22 08:55:02,774 | INFO     | did not find any defunct processes belonging to 11180
[2025-11-22 00:55:34] 2025-11-22 08:55:02,775 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:55:34] 2025-11-22 08:55:02,775 | INFO     | ready for new job
[2025-11-22 00:55:34] 2025-11-22 08:55:02,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:55:34] 2025-11-22 08:55:02,776 | INFO     | ***************************************
[2025-11-22 00:55:34] 2025-11-22 08:55:02,776 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:55:34] 2025-11-22 08:55:02,776 | INFO     | ***************************************
[2025-11-22 00:55:34] 2025-11-22 08:55:02,776 | INFO     | 
[2025-11-22 00:55:34] 2025-11-22 08:55:02,778 | INFO     | architecture information:
[2025-11-22 00:55:34] 2025-11-22 08:55:02,778 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:55:34] 2025-11-22 08:55:02,792 | INFO     | cat /etc/os-release:
[2025-11-22 00:55:34] NAME="CentOS Linux"
[2025-11-22 00:55:34] VERSION="7 (Core)"
[2025-11-22 00:55:34] ID="centos"
[2025-11-22 00:55:34] ID_LIKE="rhel fedora"
[2025-11-22 00:55:34] VERSION_ID="7"
[2025-11-22 00:55:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:55:34] ANSI_COLOR="0;31"
[2025-11-22 00:55:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:55:34] HOME_URL="https://www.centos.org/"
[2025-11-22 00:55:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:55:34] 
[2025-11-22 00:55:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:55:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:55:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:55:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:55:34] 
[2025-11-22 00:55:34] 2025-11-22 08:55:02,792 | INFO     | ***************************************
[2025-11-22 00:55:34] 2025-11-22 08:55:03,295 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | INFO     | sufficient remaining disk space (1204286390272 B)
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | INFO     | update_server=False
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:55:34] 2025-11-22 08:55:03,398 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:55:34] 2025-11-22 08:55:03,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:55:34] 2025-11-22 08:55:03,399 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:55:34] 2025-11-22 08:55:03,399 | INFO     | aborting loop
[2025-11-22 00:55:34] 2025-11-22 08:55:03,436 | INFO     | all job control threads have been joined
[2025-11-22 00:55:34] 2025-11-22 08:55:04,405 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:04,417 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:04,418 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:04,443 | INFO     | [job] control thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:04,493 | INFO     | all data control threads have been joined
[2025-11-22 00:55:34] 2025-11-22 08:55:04,680 | INFO     | all payload control threads have been joined
[2025-11-22 00:55:34] 2025-11-22 08:55:04,772 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:04,925 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,200 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,277 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:55:34] 2025-11-22 08:55:05,320 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,405 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,425 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,500 | INFO     | [data] control thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,641 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,667 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,671 | INFO     | [job] validate thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:05,685 | INFO     | [payload] control thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:09,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:55:34] 2025-11-22 08:55:18,628 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:55:34] 2025-11-22 08:55:19,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827852019520)>', '<ExcThread(monitor, started 139826997217024)>']
[2025-11-22 00:55:34] 2025-11-22 08:55:24,221 | INFO     | all workflow threads have been joined
[2025-11-22 00:55:34] 2025-11-22 08:55:24,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:55:34] 2025-11-22 08:55:24,222 | INFO     | traces error code: 0
[2025-11-22 00:55:34] 2025-11-22 08:55:24,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:55:34] 2025-11-22 08:55:34,189 | INFO     | PID=4110 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 00:55:34] 2025-11-22 08:55:34,189 | INFO     | .. there are 19 such processes running
[2025-11-22 00:55:34] 2025-11-22 08:55:34,190 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:55:34] 2025-11-22 08:55:34,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:55:34] 2025-11-22 08:55:34,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:55:34] 2025-11-22 08:55:34,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:55:34] 2025-11-22 08:55:34,190 | INFO     | [monitor] control thread has ended
[2025-11-22 00:55:34] 2025-11-22 08:55:34,313 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:55:34] 2025-11-22 08:55:34,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:55:34] 2025-11-22 08:55:34,317 [wrapper] pilotpid: 4110
[2025-11-22 00:55:34] 2025-11-22 08:55:34,318 [wrapper] Pilot exit status: 0
[2025-11-22 00:55:34] 2025-11-22 08:55:34,383 [wrapper] pandaids: 6895331134
[2025-11-22 00:55:34] 2025-11-22 08:55:34,435 [wrapper] cleanup supervisor_pilot    4116 4111
[2025-11-22 00:55:34] 2025-11-22 08:55:34,438 [wrapper] Test setup, not cleaning
[2025-11-22 00:55:34] 2025-11-22 08:55:34,440 [wrapper] apfmon messages muted
[2025-11-22 00:55:34] 2025-11-22 08:55:34,442 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:55:34] 2025-11-22 08:55:34,444 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:55:34]  *** Error codes and diagnostics ***
[2025-11-22 00:55:34]     "exeErrorCode": 65,
[2025-11-22 00:55:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 00:55:34]     "pilotErrorCode": 1305,
[2025-11-22 00:55:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 00:55:34]  *** Listing of results directory ***
[2025-11-22 00:55:34] total 405116
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc    576529 Nov 21 14:05 pilot3.tar.gz
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc      5112 Nov 21 14:31 queuedata.json
[2025-11-22 00:55:34] -rwx------. 1 boinc boinc     36292 Nov 21 14:32 runpilot2-wrapper.sh
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc       100 Nov 22 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:55:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 00:48 run_atlas
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc       105 Nov 22 00:48 job.xml
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc      6445 Nov 22 00:48 init_data.xml
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc 410602702 Nov 22 00:48 EVNT.47483658._000160.pool.root.1
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 00:48 start_atlas.sh
[2025-11-22 00:55:34] drwxrwx--x. 2 boinc boinc      4096 Nov 22 00:48 shared
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 00:48 input.tar.gz
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc         0 Nov 22 00:48 boinc_lockfile
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc      2785 Nov 22 00:48 pandaJob.out
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc    989760 Nov 22 00:49 agis_schedconf.cvmfs.json
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc   1526164 Nov 22 00:49 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:55:34] drwx------. 5 boinc boinc      4096 Nov 22 00:49 pilot3
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc       524 Nov 22 00:52 boinc_task_state.xml
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc      1021 Nov 22 00:52 memory_monitor_summary.json
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc     49872 Nov 22 00:52 log.47556137._001596.job.log.tgz.1
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc     10333 Nov 22 00:55 heartbeat.json
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc        23 Nov 22 00:55 wrapper_checkpoint.txt
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc      8192 Nov 22 00:55 boinc_mmap_file
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc        95 Nov 22 00:55 pilot_heartbeat.json
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc       820 Nov 22 00:55 pilotlog.txt
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc    108726 Nov 22 00:55 log.47556137._001596.job.log.1
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc       186 Nov 22 00:55 output.list
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc       620 Nov 22 00:55 runtime_log
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc    184320 Nov 22 00:55 result.tar.gz
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc       645 Nov 22 00:55 sGOLDmsqog8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3kJKDmih9Yan.diag
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc      8634 Nov 22 00:55 runtime_log.err
[2025-11-22 00:55:34] -rw-r--r--. 1 boinc boinc     22547 Nov 22 00:55 stderr.txt
[2025-11-22 00:55:34] No HITS result produced
[2025-11-22 00:55:34]  *** Contents of shared directory: ***
[2025-11-22 00:55:34] total 401760
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc 410602702 Nov 22 00:48 ATLAS.root_0
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 00:48 start_atlas.sh
[2025-11-22 00:55:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 00:48 input.tar.gz
[2025-11-22 00:55:34] -rw-------. 1 boinc boinc    184320 Nov 22 00:55 result.tar.gz
00:55:36 (4192372): run_atlas exited; CPU time 56.654487
00:55:36 (4192372): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN